Wall clock time and date at job start Sun Mar 29 2020 23:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39577 * 120.10678 * 2 1 4 4 C 1.43201 * 120.12447 * 0.02562 * 3 2 1 5 5 N 3.48441 * 80.50311 * 0.02562 * 2 1 3 6 6 C 1.39626 * 119.75463 * 180.02562 * 3 2 1 7 7 C 1.38000 * 119.95537 * 0.02562 * 6 3 2 8 8 C 1.38245 * 120.21102 * 359.72991 * 7 6 3 9 9 C 1.38436 * 120.10462 * 180.02562 * 2 1 3 10 10 O 1.35906 * 119.98171 * 359.97348 * 9 2 1 11 11 C 1.42903 * 117.00287 * 185.92964 * 10 9 2 12 12 H 1.09003 * 109.46810 * 21.68717 * 11 10 9 13 13 C 1.50696 * 109.47284 * 141.68881 * 11 10 9 14 14 H 1.07997 * 120.00284 * 0.02562 * 13 11 10 15 15 C 1.37885 * 119.99908 * 180.02562 * 13 11 10 16 16 N 1.31509 * 120.00124 * 180.02562 * 15 13 11 17 17 Si 1.86797 * 119.99807 * 359.97438 * 15 13 11 18 18 H 1.48502 * 109.47319 * 270.00158 * 17 15 13 19 19 H 1.48499 * 109.47258 * 30.00527 * 17 15 13 20 20 H 1.48501 * 109.47040 * 150.00175 * 17 15 13 21 21 C 1.52999 * 109.47041 * 261.69140 * 11 10 9 22 22 Cl 1.80306 * 109.47102 * 64.99814 * 21 11 10 23 23 H 1.09003 * 109.46646 * 269.97594 * 1 2 3 24 24 H 1.09008 * 109.46859 * 29.97175 * 1 2 3 25 25 H 1.08998 * 109.47236 * 149.97334 * 1 2 3 26 26 H 1.08005 * 120.02411 * 179.97438 * 6 3 2 27 27 H 1.08004 * 119.89271 * 180.02562 * 7 6 3 28 28 H 1.08003 * 119.87503 * 180.29587 * 8 7 6 29 29 H 0.97001 * 120.00605 * 180.02562 * 16 15 13 30 30 H 1.08996 * 109.46889 * 184.99664 * 21 11 10 31 31 H 1.08996 * 109.47130 * 305.00098 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2072 1.2075 0.0000 4 6 1.4962 2.4505 0.0006 5 7 0.9321 3.4367 0.0015 6 6 3.6034 1.1989 -0.0005 7 6 4.2851 -0.0010 -0.0016 8 6 3.5900 -1.1960 0.0035 9 6 2.2014 -1.1976 -0.0005 10 8 1.5236 -2.3756 -0.0005 11 6 2.2978 -3.5696 0.1305 12 1 3.2589 -3.3312 0.5861 13 6 1.5597 -4.5540 1.0005 14 1 0.5956 -4.2941 1.4120 15 6 2.1153 -5.7866 1.2713 16 7 1.4710 -6.6459 2.0302 17 14 3.7825 -6.2364 0.5590 18 1 3.5968 -6.8873 -0.7628 19 1 4.5988 -5.0067 0.3950 20 1 4.4774 -7.1727 1.4786 21 6 2.5271 -4.1830 -1.2523 22 17 3.5364 -3.0665 -2.2452 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8903 -0.5134 25 1 -0.3633 -0.8897 -0.5142 26 1 4.1496 2.1307 -0.0010 27 1 5.3651 -0.0064 -0.0016 28 1 4.1291 -2.1319 0.0075 29 1 1.8619 -7.5129 2.2211 30 1 3.0404 -5.1385 -1.1453 31 1 1.5671 -4.3392 -1.7442 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228027403.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:17 Heat of formation + Delta-G solvation = -5.959830 kcal Electronic energy + Delta-G solvation = -17493.175201 eV Core-core repulsion = 14572.567538 eV Total energy + Delta-G solvation = -2920.607663 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.32840 -39.10207 -37.30791 -36.77829 -35.28993 -33.86559 -32.42510 -31.08749 -27.94538 -27.11969 -25.26740 -23.00919 -22.54214 -19.77837 -19.18732 -17.79549 -17.36858 -16.91943 -16.50169 -16.13390 -15.34549 -15.13029 -14.91092 -14.80521 -14.42116 -14.17030 -14.03618 -14.02160 -13.50025 -13.34199 -13.18187 -12.96108 -12.59764 -12.46965 -12.31495 -12.09162 -11.88560 -11.50717 -11.22572 -11.05934 -10.81620 -9.74329 -8.97926 -8.45786 -6.57374 -0.21132 0.49267 1.23007 1.26920 1.32740 1.42920 1.55768 1.95732 2.16839 2.37170 2.85388 2.91191 2.98702 3.79673 3.91991 3.99568 4.05487 4.12331 4.18809 4.45798 4.56610 4.66987 4.73487 4.75461 4.88962 5.17513 5.24178 5.36560 5.42031 5.50382 5.71248 6.00173 6.40926 6.49899 6.71660 7.07255 8.69832 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.026289 B = 0.006465 C = 0.005858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.830730 B = 4329.717004 C = 4778.476899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.087 4.087 3 C -0.012 4.012 4 C 0.287 3.713 5 N -0.456 5.456 6 C -0.096 4.096 7 C -0.081 4.081 8 C -0.173 4.173 9 C 0.119 3.881 10 O -0.309 6.309 11 C 0.191 3.809 12 H 0.057 0.943 13 C -0.539 4.539 14 H 0.047 0.953 15 C 0.034 3.966 16 N -0.924 5.924 17 Si 0.918 3.082 18 H -0.251 1.251 19 H -0.231 1.231 20 H -0.282 1.282 21 C -0.051 4.051 22 Cl -0.193 7.193 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.162 0.838 27 H 0.166 0.834 28 H 0.135 0.865 29 H 0.277 0.723 30 H 0.088 0.912 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.276 9.347 -6.153 13.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.091 4.091 3 C -0.016 4.016 4 C -0.027 4.027 5 N -0.132 5.132 6 C -0.117 4.117 7 C -0.099 4.099 8 C -0.192 4.192 9 C 0.073 3.927 10 O -0.222 6.222 11 C 0.135 3.865 12 H 0.075 0.925 13 C -0.576 4.576 14 H 0.066 0.934 15 C -0.167 4.167 16 N -0.561 5.561 17 Si 0.741 3.259 18 H -0.176 1.176 19 H -0.154 1.154 20 H -0.208 1.208 21 C -0.114 4.114 22 Cl -0.167 7.167 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.180 0.820 27 H 0.183 0.817 28 H 0.152 0.848 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.240 10.737 -6.155 14.338 hybrid contribution 0.504 -1.347 -0.035 1.439 sum 7.745 9.389 -6.189 13.655 Atomic orbital electron populations 1.20641 0.90161 1.02776 1.02829 1.19200 0.96689 0.89347 1.03815 1.15597 0.92928 0.84692 1.08358 1.25573 0.92330 0.92335 0.92484 1.81234 1.09278 1.12264 1.10424 1.21293 0.90705 1.00060 0.99635 1.21150 1.01589 0.89933 0.97225 1.21865 0.92937 1.01120 1.03312 1.18898 0.91213 0.86026 0.96563 1.86101 1.36857 1.12503 1.86785 1.20579 0.93402 0.81568 0.90967 0.92533 1.20927 1.06728 0.99697 1.30264 0.93432 1.25646 1.01187 0.95267 0.94629 1.69950 1.40425 1.08347 1.37419 0.86299 0.79917 0.80652 0.79036 1.17640 1.15417 1.20778 1.25847 0.97373 0.94275 0.93909 1.98666 1.74229 1.68819 1.74990 0.90807 0.91387 0.91108 0.82033 0.81679 0.84773 0.91382 0.89404 0.87888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.10 9.39 71.24 0.67 -2.43 16 2 C -0.09 -2.61 5.93 -19.49 -0.12 -2.73 16 3 C -0.01 -0.31 5.73 -21.37 -0.12 -0.43 16 4 C 0.29 7.57 13.80 88.33 1.22 8.79 16 5 N -0.46 -13.45 18.54 19.01 0.35 -13.09 16 6 C -0.10 -1.94 9.75 22.55 0.22 -1.72 16 7 C -0.08 -1.71 10.02 22.22 0.22 -1.49 16 8 C -0.17 -4.99 7.19 22.42 0.16 -4.83 16 9 C 0.12 3.99 6.18 22.47 0.14 4.13 16 10 O -0.31 -12.47 8.73 -92.49 -0.81 -13.28 16 11 C 0.19 8.01 1.74 29.85 0.05 8.06 16 12 H 0.06 2.29 4.54 -2.39 -0.01 2.28 16 13 C -0.54 -28.04 9.47 25.60 0.24 -27.80 16 14 H 0.05 2.85 8.06 -2.91 -0.02 2.82 16 15 C 0.03 1.76 5.45 84.66 0.46 2.22 16 16 N -0.92 -52.34 13.96 21.45 0.30 -52.04 16 17 Si 0.92 37.16 24.41 68.60 1.67 38.84 16 18 H -0.25 -9.47 6.83 99.48 0.68 -8.79 16 19 H -0.23 -8.33 6.53 99.48 0.65 -7.68 16 20 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 21 C -0.05 -1.91 5.83 71.98 0.42 -1.49 16 22 Cl -0.19 -6.10 25.66 -2.72 -0.07 -6.17 16 23 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.07 1.77 7.09 -2.38 -0.02 1.76 16 25 H 0.07 2.19 7.53 -2.39 -0.02 2.17 16 26 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 27 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.13 4.05 4.80 -2.91 -0.01 4.04 16 29 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.09 3.27 3.22 -2.39 -0.01 3.26 16 31 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 Total: -1.00 -58.44 278.18 6.11 -52.33 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 1.09 Total: 13.13 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 3.57 Total: -19.71 kcal Atomic # 7 Polarization: -65.79 SS G_CDS: 0.65 Total: -65.14 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.81 Total: -13.28 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 1.67 Total: 38.84 kcal Atomic # 17 Polarization: -6.10 SS G_CDS: -0.07 Total: -6.17 kcal Total: -58.44 6.11 -52.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228027403.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.370 kcal (2) G-P(sol) polarization free energy of solvation -58.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds