Wall clock time and date at job start Mon Mar 30 2020 00:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86794 * 120.00017 * 2 1 4 4 H 1.48504 * 109.47278 * 274.98253 * 3 2 1 5 5 H 1.48499 * 109.47181 * 34.98184 * 3 2 1 6 6 H 1.48497 * 109.47385 * 154.98695 * 3 2 1 7 7 C 1.40027 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00045 * 186.28287 * 7 2 1 9 9 C 1.41436 * 120.00284 * 6.29263 * 7 2 1 10 10 C 1.40428 * 119.78000 * 173.68913 * 9 7 2 11 11 C 1.39333 * 118.83334 * 179.97438 * 10 9 7 12 12 C 1.48394 * 120.81787 * 179.97438 * 11 10 9 13 13 C 1.40885 * 126.23548 * 359.68501 * 12 11 10 14 14 N 1.30657 * 108.07941 * 179.81679 * 13 12 11 15 15 N 1.40007 * 108.54065 * 0.44647 * 14 13 12 16 16 C 1.46497 * 125.88023 * 179.71518 * 15 14 13 17 17 F 1.39898 * 109.47047 * 29.99729 * 16 15 14 18 18 F 1.39896 * 109.46946 * 149.99721 * 16 15 14 19 19 C 1.34744 * 108.23545 * 359.70983 * 15 14 13 20 20 C 1.40038 * 118.36065 * 359.97438 * 11 10 9 21 21 C 1.38451 * 119.42668 * 0.02562 * 20 11 10 22 22 N 1.31503 * 121.14691 * 0.02562 * 21 20 11 23 23 H 0.97002 * 119.99711 * 0.02562 * 1 2 3 24 24 H 1.07992 * 120.58493 * 0.24649 * 10 9 7 25 25 H 1.07999 * 125.96021 * 0.02562 * 13 12 11 26 26 H 1.09000 * 109.46680 * 269.99666 * 16 15 14 27 27 H 1.08001 * 126.18941 * 180.02562 * 19 15 14 28 28 H 1.08001 * 120.28573 * 180.02562 * 20 11 10 29 29 H 1.08009 * 119.42505 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3836 2.1072 -1.3948 5 1 1.4955 2.6199 0.8027 6 1 3.5877 1.4121 0.5920 7 6 2.0075 -1.2127 0.0005 8 1 3.0827 -1.2155 0.1029 9 6 1.3068 -2.4339 -0.1332 10 6 2.0199 -3.6364 -0.2656 11 6 1.3097 -4.8281 -0.3955 12 6 2.0185 -6.1238 -0.5387 13 6 3.4146 -6.3106 -0.5674 14 7 3.6501 -7.5888 -0.7018 15 7 2.4246 -8.2620 -0.7741 16 6 2.2471 -9.7075 -0.9325 17 9 3.3253 -10.3770 -0.3440 18 9 1.0577 -10.1021 -0.3107 19 6 1.4366 -7.3513 -0.6727 20 6 -0.0896 -4.7727 -0.3875 21 6 -0.7212 -3.5480 -0.2528 22 7 -0.0299 -2.4358 -0.1326 23 1 -0.4850 0.8401 -0.0004 24 1 3.0998 -3.6380 -0.2624 25 1 4.1602 -5.5333 -0.4883 26 1 2.2017 -9.9538 -1.9933 27 1 0.3764 -7.5558 -0.6933 28 1 -0.6711 -5.6775 -0.4857 29 1 -1.8004 -3.5054 -0.2471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238866009.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:58 Heat of formation + Delta-G solvation = -1.209354 kcal Electronic energy + Delta-G solvation = -18574.102538 eV Core-core repulsion = 15134.196942 eV Total energy + Delta-G solvation = -3439.905596 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.32976 -48.45972 -42.25943 -39.79631 -35.56906 -34.24991 -32.98417 -31.85226 -30.07272 -27.69299 -26.80860 -24.00155 -23.47361 -21.91859 -21.49673 -19.68484 -19.06414 -18.78465 -18.15921 -17.31516 -16.53599 -15.96468 -15.78726 -15.72844 -15.57634 -15.23343 -14.82149 -14.65201 -14.29093 -14.06031 -13.98920 -13.78782 -13.24600 -12.88078 -12.83721 -12.55754 -12.18697 -11.88289 -11.59449 -11.33413 -10.88020 -10.76980 -9.52427 -9.43024 -8.94926 -8.25266 -6.46368 0.34854 0.84188 0.96198 0.97005 1.43139 1.54228 1.57248 2.14014 2.25997 2.56019 2.90085 2.93413 3.57774 3.68545 3.88003 4.03130 4.18110 4.29430 4.45075 4.60937 4.78788 4.94522 5.11187 5.28101 5.34195 5.54145 5.56630 5.75168 5.94231 6.19237 6.33296 6.43188 6.79357 7.02005 8.26753 8.50391 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.044849 B = 0.004022 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.160453 B = 6960.450356 C = 7543.043614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.024 3.976 3 Si 0.985 3.015 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.473 4.473 8 H 0.088 0.912 9 C 0.226 3.774 10 C -0.280 4.280 11 C 0.048 3.952 12 C -0.192 4.192 13 C 0.077 3.923 14 N -0.299 5.299 15 N -0.443 5.443 16 C 0.509 3.491 17 F -0.188 7.188 18 F -0.184 7.184 19 C 0.094 3.906 20 C -0.301 4.301 21 C 0.104 3.896 22 N -0.528 5.528 23 H 0.277 0.723 24 H 0.111 0.889 25 H 0.202 0.798 26 H 0.207 0.793 27 H 0.211 0.789 28 H 0.131 0.869 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 -14.406 -3.491 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.197 4.197 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.504 4.504 8 H 0.106 0.894 9 C 0.102 3.898 10 C -0.303 4.303 11 C 0.041 3.959 12 C -0.203 4.203 13 C -0.111 4.111 14 N -0.117 5.117 15 N -0.234 5.234 16 C 0.377 3.623 17 F -0.169 7.169 18 F -0.165 7.165 19 C -0.050 4.050 20 C -0.324 4.324 21 C -0.059 4.059 22 N -0.242 5.242 23 H 0.088 0.912 24 H 0.129 0.871 25 H 0.219 0.781 26 H 0.223 0.777 27 H 0.227 0.773 28 H 0.149 0.851 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.537 -14.622 -3.476 15.242 hybrid contribution -0.050 0.603 0.314 0.681 sum 2.486 -14.020 -3.162 14.585 Atomic orbital electron populations 1.70243 1.08867 1.28924 1.30153 1.26976 0.95699 1.04512 0.92528 0.85155 0.79152 0.75954 0.79181 1.18949 1.19391 1.17802 1.19970 0.95141 0.90601 1.44700 0.89355 1.18948 0.88766 0.93077 0.89052 1.21860 0.99206 0.92862 1.16361 1.18123 0.92809 0.90058 0.94952 1.19165 0.93112 0.92884 1.15146 1.24430 0.96372 0.93755 0.96578 1.77269 1.02768 1.06430 1.25278 1.49974 1.05577 1.07448 1.60415 1.22096 0.71075 0.72409 0.96679 1.93092 1.56934 1.79461 1.87410 1.93125 1.47504 1.89496 1.86390 1.22818 0.96303 0.87602 0.98243 1.21584 0.93572 0.98724 1.18535 1.22881 0.99831 0.89069 0.94134 1.68654 1.08110 1.28519 1.18874 0.91200 0.87068 0.78100 0.77715 0.77283 0.85143 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.53 11.49 21.84 0.25 -41.28 15 2 C 0.02 1.24 5.49 85.29 0.47 1.70 15 3 Si 0.99 38.45 29.56 68.60 2.03 40.48 15 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 15 5 H -0.27 -10.06 7.11 99.48 0.71 -9.36 15 6 H -0.25 -9.51 7.11 99.48 0.71 -8.81 15 7 C -0.47 -25.78 9.14 23.49 0.21 -25.57 15 8 H 0.09 4.49 7.85 -2.91 -0.02 4.47 15 9 C 0.23 12.56 6.54 40.19 0.26 12.82 15 10 C -0.28 -13.48 9.38 23.07 0.22 -13.27 15 11 C 0.05 2.03 5.91 -19.87 -0.12 1.91 15 12 C -0.19 -6.56 6.05 -20.33 -0.12 -6.69 15 13 C 0.08 2.45 11.46 85.52 0.98 3.43 15 14 N -0.30 -9.01 12.36 -56.44 -0.70 -9.71 15 15 N -0.44 -11.07 3.96 -363.98 -1.44 -12.51 15 16 C 0.51 8.36 6.63 127.77 0.85 9.21 15 17 F -0.19 -3.93 17.35 44.97 0.78 -3.15 15 18 F -0.18 -3.14 17.01 44.97 0.76 -2.38 15 19 C 0.09 2.51 10.46 83.84 0.88 3.39 15 20 C -0.30 -12.41 9.66 22.76 0.22 -12.19 15 21 C 0.10 4.94 11.16 84.79 0.95 5.89 15 22 N -0.53 -29.53 7.88 -189.40 -1.49 -31.02 15 23 H 0.28 13.69 8.29 -92.71 -0.77 12.92 15 24 H 0.11 4.89 7.19 -2.91 -0.02 4.87 15 25 H 0.20 5.72 7.43 -2.91 -0.02 5.70 15 26 H 0.21 1.27 8.14 -2.39 -0.02 1.25 15 27 H 0.21 4.26 7.36 -2.91 -0.02 4.24 15 28 H 0.13 4.26 7.14 -2.91 -0.02 4.24 15 29 H 0.14 5.71 8.06 -2.91 -0.02 5.68 15 Total: -1.00 -69.20 274.28 6.19 -63.02 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 1.20 Total: 15.92 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 4.79 Total: -19.37 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -3.38 Total: -94.52 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 1.55 Total: -5.52 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Total: -69.20 6.19 -63.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238866009.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.810 kcal (2) G-P(sol) polarization free energy of solvation -69.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds