Wall clock time and date at job start Mon Mar 30 2020 00:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86803 * 120.00214 * 2 1 4 4 H 1.48493 * 109.47019 * 239.99951 * 3 2 1 5 5 H 1.48504 * 109.47059 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46883 * 119.99517 * 3 2 1 7 7 C 1.40050 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99757 * 180.02562 * 7 2 1 9 9 C 1.40953 * 119.99635 * 0.02562 * 7 2 1 10 10 C 1.40905 * 119.67339 * 180.02562 * 9 7 2 11 11 C 1.36639 * 119.25651 * 180.02562 * 10 9 7 12 12 C 1.40285 * 118.60995 * 359.97438 * 11 10 9 13 13 C 1.47963 * 120.34760 * 179.97438 * 12 11 10 14 14 C 1.41109 * 126.37253 * 359.95643 * 13 12 11 15 15 N 1.30550 * 108.11698 * 179.77390 * 14 13 12 16 16 N 1.39949 * 108.86092 * 0.41090 * 15 14 13 17 17 C 1.46506 * 125.80759 * 179.84319 * 16 15 14 18 18 F 1.39900 * 109.46822 * 29.69600 * 17 16 15 19 19 F 1.39897 * 109.46905 * 149.69044 * 17 16 15 20 20 C 1.34682 * 108.38120 * 359.58387 * 16 15 14 21 21 C 1.40127 * 119.30673 * 0.25424 * 12 11 10 22 22 N 1.31199 * 120.67941 * 359.47644 * 21 12 11 23 23 H 0.97010 * 120.00035 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.37309 * 0.03532 * 10 9 7 25 25 H 1.07996 * 120.69734 * 180.02562 * 11 10 9 26 26 H 1.07997 * 125.94036 * 0.02562 * 14 13 12 27 27 H 1.09000 * 109.47212 * 269.69221 * 17 16 15 28 28 H 1.08008 * 126.30427 * 180.24578 * 20 16 15 29 29 H 1.07993 * 119.66184 * 179.74241 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6963 -1.2124 5 1 1.2765 2.7465 0.0006 6 1 3.0952 1.6964 1.2126 7 6 2.0077 -1.2129 0.0005 8 1 3.0877 -1.2129 0.0010 9 6 1.3028 -2.4335 0.0005 10 6 2.0142 -3.6498 0.0016 11 6 1.3223 -4.8281 0.0011 12 6 -0.0799 -4.7837 0.0000 13 6 -0.8674 -6.0363 -0.0012 14 6 -0.3510 -7.3495 -0.0022 15 7 -1.3571 -8.1814 0.0018 16 7 -2.5497 -7.4491 -0.0039 17 6 -3.9019 -8.0130 -0.0051 18 9 -3.8928 -9.2475 0.6530 19 9 -4.7722 -7.1390 0.6551 20 6 -2.2428 -6.1377 -0.0023 21 6 -0.7268 -3.5407 -0.0059 22 7 -0.0350 -2.4260 -0.0001 23 1 -0.4851 0.8401 0.0004 24 1 3.0942 -3.6508 0.0030 25 1 1.8439 -5.7737 0.0023 26 1 0.6947 -7.6194 -0.0019 27 1 -4.2368 -8.1517 -1.0331 28 1 -2.9446 -5.3167 -0.0019 29 1 -1.8059 -3.4999 -0.0110 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238867794.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:10 Heat of formation + Delta-G solvation = -2.769192 kcal Electronic energy + Delta-G solvation = -18565.292397 eV Core-core repulsion = 15125.319161 eV Total energy + Delta-G solvation = -3439.973236 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.29261 -48.42417 -42.01217 -39.85155 -35.66403 -33.94959 -32.64024 -32.40178 -30.26413 -27.68790 -26.38117 -23.93256 -23.51650 -21.86138 -21.29542 -19.41527 -19.18794 -19.01447 -18.25032 -17.36735 -16.47039 -15.98865 -15.78246 -15.61303 -15.54317 -15.19568 -14.77144 -14.54178 -14.27483 -14.09109 -13.96196 -13.56229 -13.18561 -12.84264 -12.72080 -12.66046 -12.29185 -11.86875 -11.70479 -11.35288 -10.71041 -10.50915 -10.00219 -9.46336 -8.76705 -8.29562 -6.40988 0.41431 0.88046 1.02020 1.22837 1.42523 1.50587 1.54654 2.11952 2.23433 2.59174 2.93780 2.99539 3.61320 3.80045 3.98797 4.01410 4.23627 4.42033 4.52352 4.56587 4.73519 4.95379 5.10340 5.21253 5.47813 5.52963 5.69186 5.81214 5.98576 6.15924 6.29907 6.56391 6.73062 6.97617 8.20856 8.43476 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.043147 B = 0.003998 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.783777 B = 7001.815593 C = 7610.130273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.021 3.979 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.459 4.459 8 H 0.091 0.909 9 C 0.217 3.783 10 C -0.284 4.284 11 C -0.044 4.044 12 C -0.212 4.212 13 C -0.144 4.144 14 C 0.063 3.937 15 N -0.302 5.302 16 N -0.442 5.442 17 C 0.509 3.491 18 F -0.189 7.189 19 F -0.187 7.187 20 C 0.043 3.957 21 C 0.120 3.880 22 N -0.521 5.521 23 H 0.280 0.720 24 H 0.112 0.888 25 H 0.133 0.867 26 H 0.208 0.792 27 H 0.203 0.797 28 H 0.196 0.804 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.814 -9.711 -1.785 11.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.201 4.201 3 Si 0.807 3.193 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.490 4.490 8 H 0.109 0.891 9 C 0.093 3.907 10 C -0.307 4.307 11 C -0.068 4.068 12 C -0.218 4.218 13 C -0.155 4.155 14 C -0.125 4.125 15 N -0.122 5.122 16 N -0.235 5.235 17 C 0.377 3.623 18 F -0.170 7.170 19 F -0.169 7.169 20 C -0.099 4.099 21 C -0.046 4.046 22 N -0.233 5.233 23 H 0.091 0.909 24 H 0.130 0.870 25 H 0.151 0.849 26 H 0.225 0.775 27 H 0.219 0.781 28 H 0.213 0.787 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.974 -10.043 -1.741 12.350 hybrid contribution 0.897 0.776 0.318 1.228 sum -6.076 -9.267 -1.423 11.173 Atomic orbital electron populations 1.70224 1.08906 1.29304 1.28730 1.27040 0.95767 1.04660 0.92632 0.85186 0.78619 0.75338 0.80124 1.18193 1.19327 1.18301 1.19994 0.95027 0.90592 1.43347 0.89057 1.19058 0.88954 0.93395 0.89296 1.21604 0.99645 0.93566 1.15860 1.20908 0.93035 0.97532 0.95281 1.18606 0.93046 0.91385 1.18812 1.19270 0.91716 0.92987 1.11563 1.24427 0.99600 0.90231 0.98243 1.77069 0.89459 1.20236 1.25413 1.49710 1.06560 1.05566 1.61657 1.22024 0.73706 0.71525 0.95053 1.93082 1.95707 1.43679 1.84528 1.93116 1.68419 1.70648 1.84692 1.22931 0.96902 0.86694 1.03339 1.23010 0.99356 0.88146 0.94063 1.68706 1.07758 1.28036 1.18837 0.90919 0.86983 0.84894 0.77530 0.78136 0.78738 0.84785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.82 11.44 21.84 0.25 -39.57 15 2 C 0.02 1.07 5.50 85.29 0.47 1.54 15 3 Si 0.99 37.18 29.56 68.60 2.03 39.20 15 4 H -0.26 -9.34 7.11 99.48 0.71 -8.64 15 5 H -0.27 -9.65 7.11 99.48 0.71 -8.94 15 6 H -0.26 -9.42 7.11 99.48 0.71 -8.71 15 7 C -0.46 -24.39 9.12 23.37 0.21 -24.18 15 8 H 0.09 4.49 7.85 -2.91 -0.02 4.46 15 9 C 0.22 11.80 6.55 40.16 0.26 12.07 15 10 C -0.28 -13.44 9.76 22.55 0.22 -13.22 15 11 C -0.04 -1.81 9.63 22.39 0.22 -1.60 15 12 C -0.21 -8.84 5.92 -19.74 -0.12 -8.95 15 13 C -0.14 -4.99 6.09 -20.07 -0.12 -5.11 15 14 C 0.06 1.92 11.45 85.59 0.98 2.90 15 15 N -0.30 -9.27 12.33 -56.35 -0.69 -9.96 15 16 N -0.44 -12.02 3.96 -362.78 -1.44 -13.46 15 17 C 0.51 9.69 6.63 127.77 0.85 10.53 15 18 F -0.19 -4.29 17.35 44.97 0.78 -3.51 15 19 F -0.19 -3.82 17.00 44.97 0.76 -3.06 15 20 C 0.04 1.28 10.50 84.18 0.88 2.17 15 21 C 0.12 5.62 10.75 85.25 0.92 6.53 15 22 N -0.52 -28.52 7.83 -188.20 -1.47 -29.99 15 23 H 0.28 13.42 8.30 -92.70 -0.77 12.65 15 24 H 0.11 4.84 8.06 -2.91 -0.02 4.82 15 25 H 0.13 4.41 7.16 -2.91 -0.02 4.39 15 26 H 0.21 5.11 7.41 -2.91 -0.02 5.09 15 27 H 0.20 1.80 8.14 -2.39 -0.02 1.78 15 28 H 0.20 4.95 7.34 -2.91 -0.02 4.93 15 29 H 0.13 5.50 7.05 -2.91 -0.02 5.48 15 Total: -1.00 -66.54 273.95 6.19 -60.35 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 1.20 Total: 17.31 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: 4.77 Total: -17.32 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -3.35 Total: -92.99 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 1.54 Total: -6.57 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.20 kcal Total: -66.54 6.19 -60.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238867794.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.581 kcal (2) G-P(sol) polarization free energy of solvation -66.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds