Wall clock time and date at job start Sun Mar 29 2020 23:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32506 * 126.05503 * 2 1 4 4 C 1.33094 * 109.78075 * 179.97438 * 3 2 1 5 5 S 1.76381 * 141.31388 * 179.97438 * 4 3 2 6 6 C 1.75798 * 90.62715 * 180.02562 * 5 4 3 7 7 C 1.31078 * 109.60262 * 359.97438 * 6 5 4 8 8 N 1.34200 * 109.46606 * 359.97438 * 4 3 2 9 9 C 1.37909 * 126.05629 * 179.97438 * 2 1 3 10 10 C 1.41692 * 126.82968 * 0.05792 * 9 2 1 11 11 O 1.21788 * 120.00149 * 359.95451 * 10 9 2 12 12 N 1.34783 * 120.00007 * 179.97438 * 10 9 2 13 13 C 1.46494 * 120.00237 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47165 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00214 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99904 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00147 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99846 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47171 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46903 * 120.00298 * 18 16 14 21 21 H 1.48496 * 109.47193 * 239.99878 * 18 16 14 22 22 H 1.09004 * 109.46826 * 90.02978 * 1 2 3 23 23 H 1.08999 * 109.46861 * 210.02640 * 1 2 3 24 24 H 1.09002 * 109.47160 * 330.02785 * 1 2 3 25 25 H 1.08004 * 125.19503 * 179.97438 * 6 5 4 26 26 H 1.08006 * 121.85940 * 180.02562 * 7 6 5 27 27 H 0.97000 * 119.99674 * 359.97438 * 12 10 9 28 28 H 1.09005 * 109.46767 * 299.99761 * 13 12 10 29 29 H 1.09001 * 109.47645 * 59.99740 * 13 12 10 30 30 H 0.97005 * 120.00187 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2870 1.0712 0.0000 4 6 3.5646 0.6983 0.0006 5 16 5.1952 1.3707 0.0005 6 6 5.8831 -0.2470 0.0010 7 6 4.9189 -1.1350 0.0017 8 7 3.6393 -0.6417 0.0015 9 6 2.3188 -1.1149 0.0005 10 6 1.9018 -2.4691 0.0000 11 8 0.7146 -2.7407 -0.0002 12 7 2.8191 -3.4567 0.0000 13 6 2.3880 -4.8568 -0.0011 14 6 3.5981 -5.7549 -0.0014 15 1 4.5892 -5.3257 -0.0012 16 6 3.4400 -7.1246 -0.0019 17 7 2.2333 -7.6472 -0.0026 18 14 4.9401 -8.2379 -0.0030 19 1 6.1719 -7.4087 -0.0038 20 1 4.9208 -9.0956 1.2092 21 1 4.9198 -9.0946 -1.2157 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3633 0.8902 0.5134 25 1 6.9390 -0.4745 0.0007 26 1 5.1210 -2.1959 0.0025 27 1 3.7646 -3.2403 0.0001 28 1 1.7894 -5.0533 0.8884 29 1 1.7906 -5.0524 -0.8916 30 1 2.1220 -8.6109 -0.0026 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331717240.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:18 Heat of formation + Delta-G solvation = 58.300069 kcal Electronic energy + Delta-G solvation = -17301.963077 eV Core-core repulsion = 14418.478390 eV Total energy + Delta-G solvation = -2883.484687 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.82144 -38.73127 -36.97580 -34.31807 -32.52454 -31.27742 -30.96462 -27.94886 -26.62368 -24.52440 -23.33648 -21.45542 -20.53335 -20.06084 -18.47269 -17.03002 -16.41070 -16.08896 -15.48590 -15.15343 -14.88580 -14.44127 -14.27468 -13.93024 -13.20423 -13.03135 -12.69568 -12.16661 -12.03345 -11.93095 -11.60290 -11.56133 -11.04809 -10.99896 -10.53792 -10.42229 -10.38804 -9.49449 -9.32371 -8.88732 -8.81894 -8.12301 -7.75238 -6.25560 -4.33565 0.51501 0.62224 1.35335 1.80307 2.33070 2.58439 3.16831 3.23573 3.26161 3.79698 3.96545 4.25206 4.36577 4.47187 4.84580 4.97929 5.10814 5.16047 5.57917 5.76479 5.86469 5.93278 6.12272 6.55969 6.63104 7.17907 7.24771 7.41554 7.49044 7.61721 7.86095 8.42760 8.64133 8.87901 9.33001 10.84573 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.022723 B = 0.005544 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.917607 B = 5049.712727 C = 6261.184157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.137 3.863 3 N -0.464 5.464 4 C 0.149 3.851 5 S 0.196 5.804 6 C -0.220 4.220 7 C 0.051 3.949 8 N -0.384 5.384 9 C -0.085 4.085 10 C 0.578 3.422 11 O -0.537 6.537 12 N -0.712 5.712 13 C 0.249 3.751 14 C -0.547 4.547 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.882 5.882 18 Si 0.904 3.096 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.281 1.281 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.073 0.927 25 H 0.202 0.798 26 H 0.187 0.813 27 H 0.380 0.620 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.635 15.741 0.038 17.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.001 4.001 3 N -0.188 5.188 4 C -0.215 4.215 5 S 0.446 5.554 6 C -0.357 4.357 7 C -0.079 4.079 8 N -0.063 5.063 9 C -0.200 4.200 10 C 0.364 3.636 11 O -0.417 6.417 12 N -0.361 5.361 13 C 0.129 3.871 14 C -0.585 4.585 15 H 0.079 0.921 16 C -0.138 4.138 17 N -0.519 5.519 18 Si 0.731 3.269 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.207 1.207 22 H 0.099 0.901 23 H 0.117 0.883 24 H 0.092 0.908 25 H 0.219 0.781 26 H 0.204 0.796 27 H 0.214 0.786 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.001 17.301 0.037 18.664 hybrid contribution 1.219 -2.855 -0.023 3.105 sum 8.220 14.446 0.014 16.621 Atomic orbital electron populations 1.20390 0.85111 1.04195 1.03622 1.21413 0.96889 0.85556 0.96213 1.70255 0.96149 1.29789 1.22642 1.26334 1.00681 0.84292 1.10229 1.84704 0.86513 1.03394 1.80834 1.25200 1.04101 0.95070 1.11345 1.20586 0.80593 1.02213 1.04496 1.43683 1.05628 1.07767 1.49244 1.20802 0.79398 0.96849 1.22954 1.15577 0.86752 0.82635 0.78648 1.90812 1.15656 1.83128 1.52063 1.46594 1.08120 1.09020 1.72378 1.19185 0.96205 0.73589 0.98145 1.21190 0.92161 0.91363 1.53819 0.92125 1.24940 0.96400 0.97981 0.94523 1.69973 1.21141 1.12315 1.48463 0.86357 0.82164 0.80468 0.77895 1.19699 1.20671 1.20678 0.90136 0.88296 0.90787 0.78118 0.79591 0.78587 0.95083 0.95088 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 9.84 36.01 0.35 -0.76 16 2 C 0.14 2.39 7.16 -82.42 -0.59 1.80 16 3 N -0.46 -7.84 11.25 -9.26 -0.10 -7.94 16 4 C 0.15 2.24 8.89 -88.92 -0.79 1.45 16 5 S 0.20 1.95 23.38 -107.50 -2.51 -0.57 16 6 C -0.22 -1.90 11.13 28.99 0.32 -1.58 16 7 C 0.05 0.60 10.44 -16.91 -0.18 0.43 16 8 N -0.38 -5.96 3.19 -61.25 -0.20 -6.16 16 9 C -0.09 -1.58 6.94 -82.79 -0.57 -2.15 16 10 C 0.58 12.35 7.60 -14.94 -0.11 12.23 16 11 O -0.54 -12.83 14.69 5.11 0.08 -12.76 16 12 N -0.71 -15.39 5.54 -64.38 -0.36 -15.74 16 13 C 0.25 6.53 5.43 -5.20 -0.03 6.50 16 14 C -0.55 -14.50 9.28 -34.44 -0.32 -14.82 16 15 H 0.06 1.49 7.60 -52.49 -0.40 1.09 16 16 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 17 N -0.88 -25.46 13.29 55.43 0.74 -24.72 16 18 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 23 H 0.10 1.59 6.44 -51.93 -0.33 1.26 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.20 0.93 8.06 -52.48 -0.42 0.51 16 26 H 0.19 2.02 6.07 -52.48 -0.32 1.70 16 27 H 0.38 7.07 5.18 -40.82 -0.21 6.86 16 28 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 278.57 15.07 4.20 4.20 Total: -1.00 -32.77 278.57 -7.71 -40.47 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -2.51 Total: 3.17 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -2.01 Total: 4.79 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.08 Total: -54.57 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.76 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.51 Total: -0.57 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.77 -7.71 -40.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331717240.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.771 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds