Wall clock time and date at job start Sun Mar 29 2020 23:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32506 * 126.05503 * 2 1 4 4 C 1.33094 * 109.78075 * 179.97438 * 3 2 1 5 5 S 1.76381 * 141.31388 * 179.97438 * 4 3 2 6 6 C 1.75798 * 90.62715 * 180.02562 * 5 4 3 7 7 C 1.31078 * 109.60262 * 359.97438 * 6 5 4 8 8 N 1.34200 * 109.46606 * 359.97438 * 4 3 2 9 9 C 1.37909 * 126.05629 * 179.97438 * 2 1 3 10 10 C 1.41692 * 126.82968 * 0.05792 * 9 2 1 11 11 O 1.21788 * 120.00149 * 359.95451 * 10 9 2 12 12 N 1.34783 * 120.00007 * 179.97438 * 10 9 2 13 13 C 1.46494 * 120.00237 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47165 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00214 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99904 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00147 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99846 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47171 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46903 * 120.00298 * 18 16 14 21 21 H 1.48496 * 109.47193 * 239.99878 * 18 16 14 22 22 H 1.09004 * 109.46826 * 90.02978 * 1 2 3 23 23 H 1.08999 * 109.46861 * 210.02640 * 1 2 3 24 24 H 1.09002 * 109.47160 * 330.02785 * 1 2 3 25 25 H 1.08004 * 125.19503 * 179.97438 * 6 5 4 26 26 H 1.08006 * 121.85940 * 180.02562 * 7 6 5 27 27 H 0.97000 * 119.99674 * 359.97438 * 12 10 9 28 28 H 1.09005 * 109.46767 * 299.99761 * 13 12 10 29 29 H 1.09001 * 109.47645 * 59.99740 * 13 12 10 30 30 H 0.97005 * 120.00187 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2870 1.0712 0.0000 4 6 3.5646 0.6983 0.0006 5 16 5.1952 1.3707 0.0005 6 6 5.8831 -0.2470 0.0010 7 6 4.9189 -1.1350 0.0017 8 7 3.6393 -0.6417 0.0015 9 6 2.3188 -1.1149 0.0005 10 6 1.9018 -2.4691 0.0000 11 8 0.7146 -2.7407 -0.0002 12 7 2.8191 -3.4567 0.0000 13 6 2.3880 -4.8568 -0.0011 14 6 3.5981 -5.7549 -0.0014 15 1 4.5892 -5.3257 -0.0012 16 6 3.4400 -7.1246 -0.0019 17 7 2.2333 -7.6472 -0.0026 18 14 4.9401 -8.2379 -0.0030 19 1 6.1719 -7.4087 -0.0038 20 1 4.9208 -9.0956 1.2092 21 1 4.9198 -9.0946 -1.2157 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3633 0.8902 0.5134 25 1 6.9390 -0.4745 0.0007 26 1 5.1210 -2.1959 0.0025 27 1 3.7646 -3.2403 0.0001 28 1 1.7894 -5.0533 0.8884 29 1 1.7906 -5.0524 -0.8916 30 1 2.1220 -8.6109 -0.0026 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331717240.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:18 Heat of formation + Delta-G solvation = 35.405896 kcal Electronic energy + Delta-G solvation = -17302.955843 eV Core-core repulsion = 14418.478390 eV Total energy + Delta-G solvation = -2884.477453 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.98481 -40.42684 -38.07343 -36.21132 -34.47932 -32.36277 -32.29447 -29.65346 -28.10424 -25.66906 -25.08158 -23.00793 -21.71781 -21.50383 -19.71162 -18.62096 -17.64648 -17.61754 -17.21084 -16.45761 -16.32210 -16.00616 -15.72547 -15.18929 -14.57295 -14.38682 -14.06657 -13.96547 -13.81014 -13.31983 -12.91802 -12.78199 -12.64518 -12.43748 -12.23735 -11.70285 -11.60102 -11.50939 -10.99260 -10.86769 -10.13034 -9.85062 -8.85952 -8.32526 -6.50322 -0.58873 -0.36179 0.49123 0.74886 1.26191 1.33749 1.41998 1.43532 1.56394 2.21421 2.25636 2.47590 3.02812 3.16623 3.43065 3.72152 4.03023 4.23521 4.45667 4.66067 4.73385 4.76798 4.92735 5.04211 5.17465 5.32434 5.38205 5.50960 5.62488 5.77519 6.33937 6.56311 6.71056 7.11888 7.27168 8.79952 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.022723 B = 0.005544 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.917607 B = 5049.712727 C = 6261.184157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.142 3.858 3 N -0.490 5.490 4 C 0.133 3.867 5 S 0.272 5.728 6 C -0.176 4.176 7 C 0.000 4.000 8 N -0.382 5.382 9 C -0.130 4.130 10 C 0.580 3.420 11 O -0.576 6.576 12 N -0.709 5.709 13 C 0.267 3.733 14 C -0.559 4.559 15 H 0.083 0.917 16 C 0.006 3.994 17 N -0.928 5.928 18 Si 0.986 3.014 19 H -0.250 1.250 20 H -0.279 1.279 21 H -0.279 1.279 22 H 0.089 0.911 23 H 0.079 0.921 24 H 0.097 0.903 25 H 0.252 0.748 26 H 0.192 0.808 27 H 0.397 0.603 28 H -0.007 1.007 29 H -0.007 1.007 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.684 17.252 0.002 20.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.001 3.999 3 N -0.215 5.215 4 C -0.231 4.231 5 S 0.522 5.478 6 C -0.313 4.313 7 C -0.128 4.128 8 N -0.061 5.061 9 C -0.245 4.245 10 C 0.369 3.631 11 O -0.458 6.458 12 N -0.359 5.359 13 C 0.145 3.855 14 C -0.597 4.597 15 H 0.102 0.898 16 C -0.194 4.194 17 N -0.566 5.566 18 Si 0.809 3.191 19 H -0.173 1.173 20 H -0.204 1.204 21 H -0.205 1.205 22 H 0.108 0.892 23 H 0.097 0.903 24 H 0.115 0.885 25 H 0.268 0.732 26 H 0.209 0.791 27 H 0.233 0.767 28 H 0.011 0.989 29 H 0.011 0.989 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.117 18.855 0.003 21.889 hybrid contribution 0.104 -3.108 -0.012 3.110 sum 11.221 15.747 -0.009 19.336 Atomic orbital electron populations 1.20403 0.84218 1.04281 1.04196 1.21767 0.97810 0.85604 0.94696 1.70261 0.97148 1.29456 1.24613 1.27394 1.02331 0.84814 1.08563 1.84648 0.82134 1.02918 1.78122 1.25925 1.05589 0.93790 1.05986 1.20930 0.79789 1.03463 1.08575 1.43742 1.05765 1.08035 1.48511 1.20216 0.81506 0.95242 1.27577 1.15910 0.86119 0.83764 0.77304 1.90772 1.17183 1.84058 1.53739 1.46287 1.09189 1.07309 1.73136 1.18650 0.95853 0.76408 0.94619 1.21571 0.92796 0.91753 1.53533 0.89849 1.26066 0.99850 0.99826 0.93623 1.70136 1.24078 1.12903 1.49529 0.85094 0.78333 0.77974 0.77721 1.17324 1.20434 1.20452 0.89247 0.90274 0.88459 0.73158 0.79129 0.76678 0.98886 0.98894 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.25 9.84 71.24 0.70 -1.55 16 2 C 0.14 5.03 7.16 42.38 0.30 5.33 16 3 N -0.49 -16.26 11.25 -183.21 -2.06 -18.33 16 4 C 0.13 3.76 8.89 179.76 1.60 5.36 16 5 S 0.27 4.22 23.38 -56.49 -1.32 2.89 16 6 C -0.18 -2.16 11.13 67.70 0.75 -1.40 16 7 C 0.00 0.01 10.44 83.75 0.87 0.88 16 8 N -0.38 -11.54 3.19 -347.69 -1.11 -12.65 16 9 C -0.13 -4.96 6.94 38.56 0.27 -4.69 16 10 C 0.58 26.24 7.60 85.09 0.65 26.89 16 11 O -0.58 -29.61 14.69 -4.63 -0.07 -29.67 16 12 N -0.71 -31.98 5.54 -475.78 -2.63 -34.61 16 13 C 0.27 14.80 5.43 85.63 0.46 15.26 16 14 C -0.56 -29.98 9.28 25.60 0.24 -29.74 16 15 H 0.08 3.98 7.60 -2.91 -0.02 3.96 16 16 C 0.01 0.35 5.46 84.66 0.46 0.81 16 17 N -0.93 -55.29 13.29 21.45 0.28 -55.00 16 18 Si 0.99 41.11 29.54 68.60 2.03 43.13 16 19 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 20 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 22 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 23 H 0.08 2.74 6.44 -2.39 -0.02 2.73 16 24 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 25 H 0.25 0.49 8.06 -2.91 -0.02 0.46 16 26 H 0.19 3.76 6.07 -2.91 -0.02 3.74 16 27 H 0.40 14.94 5.18 -92.71 -0.48 14.46 16 28 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 29 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 Total: -1.00 -75.92 278.57 2.14 -73.78 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.71 Total: 13.31 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 6.31 Total: 17.15 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -5.52 Total: -120.59 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.07 Total: -29.67 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -1.32 Total: 2.89 kcal Total: -75.92 2.14 -73.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331717240.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.185 kcal (2) G-P(sol) polarization free energy of solvation -75.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds