Wall clock time and date at job start Mon Mar 30 2020 00:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00118 * 2 1 4 4 H 1.48506 * 109.46787 * 270.00137 * 3 2 1 5 5 H 1.48498 * 109.47094 * 30.00095 * 3 2 1 6 6 H 1.48503 * 109.46852 * 150.00291 * 3 2 1 7 7 C 1.38815 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99836 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00359 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00167 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46916 * 180.02562 * 10 9 7 12 12 C 1.35344 * 126.75128 * 95.00467 * 11 10 9 13 13 N 1.35315 * 106.17731 * 179.97438 * 12 11 10 14 14 C 1.46502 * 125.87191 * 179.73450 * 13 12 11 15 15 C 1.50693 * 109.47217 * 125.00138 * 14 13 12 16 16 N 1.29032 * 124.91501 * 90.00346 * 15 14 13 17 17 C 1.31779 * 117.12459 * 179.97438 * 16 15 14 18 18 C 1.33637 * 114.50283 * 0.02562 * 17 16 15 19 19 S 1.70978 * 124.91929 * 269.69903 * 15 14 13 20 20 N 1.28719 * 108.26209 * 0.02562 * 13 12 11 21 21 N 1.28633 * 110.17824 * 359.97438 * 20 13 12 22 22 H 0.96999 * 119.99849 * 0.02562 * 1 2 3 23 23 H 0.97004 * 119.99462 * 0.02562 * 9 7 2 24 24 H 1.09003 * 109.46738 * 60.00318 * 10 9 7 25 25 H 1.08998 * 109.47615 * 300.00338 * 10 9 7 26 26 H 1.07998 * 126.91323 * 359.95581 * 12 11 10 27 27 H 1.09004 * 109.47039 * 245.00372 * 14 13 12 28 28 H 1.09002 * 109.47052 * 5.00148 * 14 13 12 29 29 H 1.08001 * 122.75131 * 180.02562 * 17 16 15 30 30 H 1.08005 * 126.04165 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.5937 -2.1956 -0.0011 12 6 6.4072 -2.1406 1.0792 13 7 7.6453 -1.8689 0.6055 14 6 8.8575 -1.7100 1.4126 15 6 9.9191 -2.6575 0.9164 16 7 10.7881 -2.3805 0.0037 17 6 11.6493 -3.3264 -0.3129 18 6 11.4981 -4.4648 0.3705 19 16 10.1512 -4.2526 1.4865 20 7 7.5737 -1.7678 -0.6757 21 7 6.3637 -1.9576 -1.0689 22 1 -0.4850 0.8400 -0.0004 23 1 3.8647 -0.3621 -0.0007 24 1 3.8484 -3.0426 -0.8909 25 1 3.8492 -3.0424 0.8891 26 1 6.1250 -2.2843 2.1117 27 1 9.2179 -0.6847 1.3291 28 1 8.6313 -1.9318 2.4555 29 1 12.4146 -3.1926 -1.0631 30 1 12.0987 -5.3559 0.2617 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349721093.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:39 Heat of formation + Delta-G solvation = 144.489778 kcal Electronic energy + Delta-G solvation = -16673.325197 eV Core-core repulsion = 13825.870727 eV Total energy + Delta-G solvation = -2847.454470 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.069 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.28554 -40.70504 -37.14137 -35.94789 -33.82754 -32.09319 -31.87829 -29.09373 -27.82348 -25.49966 -24.35338 -23.06090 -22.24288 -21.13678 -19.94592 -19.09920 -18.26175 -17.53657 -16.64662 -16.35572 -16.00355 -15.93915 -15.20041 -15.16223 -14.83301 -14.60508 -14.31760 -13.96209 -13.49926 -13.33259 -12.90853 -12.55055 -12.52569 -12.11692 -11.86448 -11.80624 -11.30165 -11.01475 -10.70534 -10.50613 -10.26159 -10.03600 -9.31183 -8.01924 -5.35161 -0.51710 0.24878 0.59087 0.64658 1.29487 1.35395 1.41209 1.42880 1.48026 1.94596 2.48295 2.88829 3.26699 3.30485 3.61387 3.83349 3.96405 4.04067 4.18382 4.23114 4.31854 4.44679 4.54793 4.84733 5.08202 5.11612 5.14700 5.57306 5.76329 6.21851 6.65186 7.06451 7.48802 7.81542 8.01159 9.19312 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.046906 B = 0.003860 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.793157 B = 7252.590989 C = 7454.777009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.057 4.057 3 Si 0.950 3.050 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.257 1.257 7 C -0.231 4.231 8 H 0.068 0.932 9 N -0.753 5.753 10 C 0.240 3.760 11 C -0.044 4.044 12 C -0.010 4.010 13 N -0.288 5.288 14 C 0.189 3.811 15 C -0.012 4.012 16 N -0.475 5.475 17 C 0.014 3.986 18 C -0.238 4.238 19 S 0.182 5.818 20 N -0.104 5.104 21 N -0.299 5.299 22 H 0.259 0.741 23 H 0.362 0.638 24 H 0.032 0.968 25 H 0.072 0.928 26 H 0.241 0.759 27 H 0.134 0.866 28 H 0.177 0.823 29 H 0.195 0.805 30 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.187 -9.631 9.418 31.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.249 4.249 3 Si 0.778 3.222 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.182 1.182 7 C -0.362 4.362 8 H 0.086 0.914 9 N -0.399 5.399 10 C 0.113 3.887 11 C -0.183 4.183 12 C -0.161 4.161 13 N -0.082 5.082 14 C 0.067 3.933 15 C -0.289 4.289 16 N -0.191 5.191 17 C -0.137 4.137 18 C -0.377 4.377 19 S 0.434 5.566 20 N -0.083 5.083 21 N -0.166 5.166 22 H 0.068 0.932 23 H 0.195 0.805 24 H 0.050 0.950 25 H 0.090 0.910 26 H 0.258 0.742 27 H 0.151 0.849 28 H 0.194 0.806 29 H 0.212 0.788 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 28.314 -9.564 8.646 31.111 hybrid contribution 0.245 1.081 -0.238 1.134 sum 28.558 -8.483 8.408 30.956 Atomic orbital electron populations 1.69854 1.06841 1.26639 1.59743 1.25374 0.96000 1.00783 1.02757 0.85492 0.78596 0.80469 0.77675 1.21552 1.21518 1.18192 1.19069 0.82094 0.93917 1.41077 0.91379 1.42693 1.02574 1.03608 1.91032 1.18920 0.81572 0.87869 1.00361 1.22314 0.98239 1.07875 0.89833 1.24050 0.83119 1.05780 1.03141 1.47575 1.09343 1.45173 1.06148 1.20930 0.76729 1.00584 0.95106 1.26838 1.01769 0.99509 1.00748 1.66195 1.04637 1.35462 1.12793 1.22203 1.00133 0.88470 1.02941 1.27697 1.03319 1.04989 1.01708 1.83914 1.26774 1.09345 1.36527 1.78339 1.15109 1.20513 0.94334 1.75090 0.97073 1.16375 1.28099 0.93238 0.80514 0.95033 0.91026 0.74241 0.84862 0.80574 0.78835 0.77187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.27 13.97 21.65 0.30 -62.97 16 2 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 3 Si 0.95 47.23 27.74 68.60 1.90 49.13 16 4 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.26 -11.69 6.52 99.48 0.65 -11.04 16 7 C -0.23 -13.33 10.47 84.03 0.88 -12.45 16 8 H 0.07 4.20 8.06 -2.91 -0.02 4.17 16 9 N -0.75 -36.63 5.40 -347.18 -1.87 -38.50 16 10 C 0.24 9.45 6.82 85.63 0.58 10.04 16 11 C -0.04 -1.54 6.61 41.59 0.28 -1.26 16 12 C -0.01 -0.23 11.50 83.49 0.96 0.73 16 13 N -0.29 -6.97 3.43 -351.47 -1.20 -8.18 16 14 C 0.19 2.70 7.03 85.63 0.60 3.30 16 15 C -0.01 -0.20 6.76 88.52 0.60 0.40 16 16 N -0.48 -10.16 10.54 -191.45 -2.02 -12.18 16 17 C 0.01 0.22 11.35 83.66 0.95 1.17 16 18 C -0.24 -2.72 11.37 66.78 0.76 -1.96 16 19 S 0.18 2.21 23.18 -56.49 -1.31 0.90 16 20 N -0.10 -3.57 12.93 37.02 0.48 -3.09 16 21 N -0.30 -11.83 12.41 -48.60 -0.60 -12.43 16 22 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 23 H 0.36 17.54 5.52 -92.70 -0.51 17.03 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.24 3.23 8.06 -2.91 -0.02 3.21 16 27 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.18 0.69 8.07 -2.39 -0.02 0.67 16 29 H 0.19 2.21 8.06 -2.91 -0.02 2.18 16 30 H 0.21 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -82.19 286.30 2.36 -79.83 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.61 Total: 10.49 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 6.08 Total: -3.01 kcal Atomic # 7 Polarization: -132.43 SS G_CDS: -4.92 Total: -137.35 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.90 Total: 49.13 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.31 Total: 0.90 kcal Total: -82.19 2.36 -79.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349721093.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.322 kcal (2) G-P(sol) polarization free energy of solvation -82.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds