Wall clock time and date at job start Mon Mar 30 2020 00:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36970 * 120.00170 * 2 1 4 4 H 1.07990 * 120.00154 * 237.42563 * 3 2 1 5 5 C 1.38986 * 119.99541 * 57.41418 * 3 2 1 6 6 N 1.31401 * 120.00185 * 11.78200 * 5 3 2 7 7 Si 1.86803 * 119.99904 * 191.77268 * 5 3 2 8 8 H 1.48507 * 109.46806 * 0.02562 * 7 5 3 9 9 H 1.48492 * 109.46998 * 120.00397 * 7 5 3 10 10 H 1.48501 * 109.47279 * 240.00609 * 7 5 3 11 11 C 1.34778 * 120.00721 * 180.02562 * 2 1 3 12 12 O 1.21632 * 119.99225 * 5.38522 * 11 2 1 13 13 C 1.47409 * 120.00655 * 185.38330 * 11 2 1 14 14 C 1.37950 * 126.76683 * 186.67601 * 13 11 2 15 15 O 1.33609 * 108.39073 * 180.02562 * 14 13 11 16 16 C 1.34894 * 109.89733 * 0.02562 * 15 14 13 17 17 C 1.41673 * 125.68338 * 179.97438 * 16 15 14 18 18 C 1.35667 * 119.99725 * 0.04722 * 17 16 15 19 19 C 1.41370 * 119.99861 * 180.02562 * 18 17 16 20 20 O 1.21695 * 119.99945 * 359.97438 * 19 18 17 21 21 O 1.34988 * 119.99850 * 179.97438 * 19 18 17 22 22 C 1.36519 * 108.64076 * 0.02562 * 16 15 14 23 23 H 1.09002 * 109.46913 * 178.28270 * 1 2 3 24 24 H 1.09001 * 109.46900 * 298.27277 * 1 2 3 25 25 H 1.08999 * 109.47333 * 58.27823 * 1 2 3 26 26 H 0.96999 * 120.00105 * 179.97438 * 6 5 3 27 27 H 1.08002 * 125.79891 * 359.76241 * 14 13 11 28 28 H 1.08002 * 120.00005 * 180.02562 * 17 16 15 29 29 H 1.08002 * 120.00270 * 359.97438 * 18 17 16 30 30 H 0.96697 * 114.00312 * 179.97438 * 21 19 18 31 31 H 1.07997 * 126.70016 * 180.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1499 1.1862 0.0000 4 1 2.8559 1.4020 -0.7881 5 6 1.9359 2.1121 1.0142 6 7 1.2621 1.7663 2.0881 7 14 2.6064 3.8480 0.8509 8 1 3.3225 3.9822 -0.4431 9 1 1.4836 4.8187 0.8979 10 1 3.5456 4.1230 1.9678 11 6 2.1390 -1.1671 -0.0005 12 8 1.5349 -2.2181 -0.0999 13 6 3.6082 -1.1700 0.1192 14 6 4.4438 -2.2619 0.0064 15 8 5.7027 -1.8488 0.1786 16 6 5.7230 -0.5187 0.4019 17 6 6.8823 0.2637 0.6279 18 6 8.1060 -0.3219 0.6303 19 6 9.2628 0.4587 0.8564 20 8 9.1608 1.6560 1.0484 21 8 10.4803 -0.1242 0.8593 22 6 4.4403 -0.0521 0.3750 23 1 -0.3633 -1.0272 -0.0308 24 1 -0.3633 0.4868 0.9051 25 1 -0.3634 0.5403 -0.8741 26 1 1.1131 2.4124 2.7961 27 1 4.1327 -3.2784 -0.1840 28 1 6.7918 1.3264 0.7980 29 1 8.1964 -1.3847 0.4603 30 1 11.2098 0.4895 1.0218 31 1 4.1221 0.9699 0.5190 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604102471.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:18 Heat of formation + Delta-G solvation = -87.837658 kcal Electronic energy + Delta-G solvation = -19382.602508 eV Core-core repulsion = 16017.735191 eV Total energy + Delta-G solvation = -3364.867317 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.24570 -40.17244 -38.36801 -36.18169 -34.88004 -34.14061 -32.58742 -31.68429 -29.08565 -26.64984 -25.12030 -24.72091 -22.11502 -20.95148 -20.19165 -18.78797 -18.29069 -17.20361 -16.74170 -16.08787 -15.84064 -15.61807 -15.48746 -14.76382 -14.59463 -13.89812 -13.80485 -13.75556 -12.66424 -12.43625 -12.25033 -11.93270 -11.80678 -11.63402 -11.44610 -11.18167 -11.09082 -10.73946 -10.62791 -10.58831 -10.39229 -9.27503 -9.21581 -8.76218 -7.79257 -7.37973 -6.48308 -4.44113 0.46267 2.05245 2.65873 3.01787 3.12748 3.14729 3.16889 3.36217 3.37140 3.93410 4.36788 4.62403 4.81874 5.06306 5.14183 5.43670 5.44771 5.64537 6.00530 6.09875 6.23958 6.36131 6.40792 6.48158 6.62547 6.73063 6.92102 7.07306 7.25965 7.35765 7.89386 7.93466 8.17308 8.88314 9.30883 9.78303 10.49944 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.018138 B = 0.006324 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.367945 B = 4426.601613 C = 5811.036456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.433 5.433 3 C -0.355 4.355 4 H 0.088 0.912 5 C 0.054 3.946 6 N -0.850 5.850 7 Si 0.902 3.098 8 H -0.262 1.262 9 H -0.275 1.275 10 H -0.274 1.274 11 C 0.547 3.453 12 O -0.608 6.608 13 C -0.196 4.196 14 C 0.041 3.959 15 O -0.166 6.166 16 C -0.082 4.082 17 C 0.075 3.925 18 C -0.250 4.250 19 C 0.519 3.481 20 O -0.532 6.532 21 O -0.511 6.511 22 C -0.068 4.068 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.272 0.728 27 H 0.217 0.783 28 H 0.159 0.841 29 H 0.138 0.862 30 H 0.405 0.595 31 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.316 -1.512 -2.044 10.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.151 5.151 3 C -0.483 4.483 4 H 0.105 0.895 5 C -0.156 4.156 6 N -0.483 5.483 7 Si 0.727 3.273 8 H -0.186 1.186 9 H -0.201 1.201 10 H -0.200 1.200 11 C 0.337 3.663 12 O -0.495 6.495 13 C -0.200 4.200 14 C -0.031 4.031 15 O -0.062 6.062 16 C -0.129 4.129 17 C 0.056 3.944 18 C -0.269 4.269 19 C 0.368 3.632 20 O -0.425 6.425 21 O -0.321 6.321 22 C -0.087 4.087 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.234 0.766 28 H 0.177 0.823 29 H 0.156 0.844 30 H 0.261 0.739 31 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 9.816 -2.040 -1.926 10.209 hybrid contribution 0.535 1.403 0.218 1.517 sum 10.351 -0.638 -1.708 10.510 Atomic orbital electron populations 1.21537 0.82186 1.00696 1.01170 1.42928 1.04652 1.04221 1.63282 1.19311 1.25716 0.93935 1.09332 0.89470 1.25702 0.95970 0.99979 0.93904 1.69881 1.37409 1.35182 1.05863 0.86256 0.79343 0.82472 0.79199 1.18574 1.20062 1.19988 1.17606 0.85128 0.84252 0.79359 1.90617 1.69865 1.32035 1.57002 1.20807 0.95997 0.93129 1.10105 1.24979 0.79553 0.99931 0.98650 1.83897 1.29640 1.23468 1.69192 1.19438 0.95595 0.81537 1.16292 1.20803 0.88558 0.98985 0.86012 1.21014 0.90190 1.01542 1.14117 1.19533 0.84098 0.86245 0.73368 1.90954 1.87581 1.16588 1.47398 1.85098 1.17607 1.44482 1.84867 1.23596 0.89206 1.02789 0.93068 0.92311 0.91256 0.94267 0.91726 0.76640 0.82344 0.84388 0.73948 0.79125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.01 10.28 59.85 0.62 2.62 16 2 N -0.43 -10.68 2.74 -123.42 -0.34 -11.01 16 3 C -0.35 -8.46 5.81 -14.98 -0.09 -8.55 16 4 H 0.09 2.01 6.91 -52.49 -0.36 1.64 16 5 C 0.05 1.27 4.91 -17.46 -0.09 1.19 16 6 N -0.85 -21.60 12.21 55.50 0.68 -20.92 16 7 Si 0.90 18.12 29.50 -169.99 -5.02 13.10 16 8 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 9 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 10 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 11 C 0.55 13.31 7.62 -12.53 -0.10 13.22 16 12 O -0.61 -15.72 16.26 5.25 0.09 -15.63 16 13 C -0.20 -4.09 6.03 -104.95 -0.63 -4.72 16 14 C 0.04 0.70 11.95 30.63 0.37 1.07 16 15 O -0.17 -2.71 10.10 5.88 0.06 -2.65 16 16 C -0.08 -1.37 6.77 -38.89 -0.26 -1.64 16 17 C 0.07 1.10 9.37 -39.19 -0.37 0.73 16 18 C -0.25 -3.39 9.54 -39.31 -0.38 -3.77 16 19 C 0.52 6.99 8.04 31.92 0.26 7.25 16 20 O -0.53 -8.58 16.84 -19.41 -0.33 -8.91 16 21 O -0.51 -5.38 13.54 -41.28 -0.56 -5.94 16 22 C -0.07 -1.31 9.07 -38.89 -0.35 -1.66 16 23 H 0.06 1.32 6.91 -51.93 -0.36 0.97 16 24 H 0.07 1.67 6.83 -51.93 -0.35 1.31 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 27 H 0.22 2.99 8.06 -52.49 -0.42 2.57 16 28 H 0.16 2.23 7.46 -52.49 -0.39 1.84 16 29 H 0.14 1.75 7.70 -52.49 -0.40 1.35 16 30 H 0.40 2.43 8.98 45.56 0.41 2.84 16 31 H 0.19 3.87 4.96 -52.49 -0.26 3.61 16 LS Contribution 286.16 15.07 4.31 4.31 Total: -1.00 -30.38 286.16 -3.83 -34.21 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -1.70 Total: 7.70 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -1.02 Total: 5.74 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.34 Total: -31.93 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.74 Total: -33.13 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.02 Total: 13.10 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.38 -3.83 -34.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604102471.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.626 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds