Wall clock time and date at job start Mon Mar 30 2020 00:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36970 * 120.00170 * 2 1 4 4 H 1.07990 * 120.00154 * 237.42563 * 3 2 1 5 5 C 1.38986 * 119.99541 * 57.41418 * 3 2 1 6 6 N 1.31401 * 120.00185 * 11.78200 * 5 3 2 7 7 Si 1.86803 * 119.99904 * 191.77268 * 5 3 2 8 8 H 1.48507 * 109.46806 * 0.02562 * 7 5 3 9 9 H 1.48492 * 109.46998 * 120.00397 * 7 5 3 10 10 H 1.48501 * 109.47279 * 240.00609 * 7 5 3 11 11 C 1.34778 * 120.00721 * 180.02562 * 2 1 3 12 12 O 1.21632 * 119.99225 * 5.38522 * 11 2 1 13 13 C 1.47409 * 120.00655 * 185.38330 * 11 2 1 14 14 C 1.37950 * 126.76683 * 186.67601 * 13 11 2 15 15 O 1.33609 * 108.39073 * 180.02562 * 14 13 11 16 16 C 1.34894 * 109.89733 * 0.02562 * 15 14 13 17 17 C 1.41673 * 125.68338 * 179.97438 * 16 15 14 18 18 C 1.35667 * 119.99725 * 0.04722 * 17 16 15 19 19 C 1.41370 * 119.99861 * 180.02562 * 18 17 16 20 20 O 1.21695 * 119.99945 * 359.97438 * 19 18 17 21 21 O 1.34988 * 119.99850 * 179.97438 * 19 18 17 22 22 C 1.36519 * 108.64076 * 0.02562 * 16 15 14 23 23 H 1.09002 * 109.46913 * 178.28270 * 1 2 3 24 24 H 1.09001 * 109.46900 * 298.27277 * 1 2 3 25 25 H 1.08999 * 109.47333 * 58.27823 * 1 2 3 26 26 H 0.96999 * 120.00105 * 179.97438 * 6 5 3 27 27 H 1.08002 * 125.79891 * 359.76241 * 14 13 11 28 28 H 1.08002 * 120.00005 * 180.02562 * 17 16 15 29 29 H 1.08002 * 120.00270 * 359.97438 * 18 17 16 30 30 H 0.96697 * 114.00312 * 179.97438 * 21 19 18 31 31 H 1.07997 * 126.70016 * 180.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1499 1.1862 0.0000 4 1 2.8559 1.4020 -0.7881 5 6 1.9359 2.1121 1.0142 6 7 1.2621 1.7663 2.0881 7 14 2.6064 3.8480 0.8509 8 1 3.3225 3.9822 -0.4431 9 1 1.4836 4.8187 0.8979 10 1 3.5456 4.1230 1.9678 11 6 2.1390 -1.1671 -0.0005 12 8 1.5349 -2.2181 -0.0999 13 6 3.6082 -1.1700 0.1192 14 6 4.4438 -2.2619 0.0064 15 8 5.7027 -1.8488 0.1786 16 6 5.7230 -0.5187 0.4019 17 6 6.8823 0.2637 0.6279 18 6 8.1060 -0.3219 0.6303 19 6 9.2628 0.4587 0.8564 20 8 9.1608 1.6560 1.0484 21 8 10.4803 -0.1242 0.8593 22 6 4.4403 -0.0521 0.3750 23 1 -0.3633 -1.0272 -0.0308 24 1 -0.3633 0.4868 0.9051 25 1 -0.3634 0.5403 -0.8741 26 1 1.1131 2.4124 2.7961 27 1 4.1327 -3.2784 -0.1840 28 1 6.7918 1.3264 0.7980 29 1 8.1964 -1.3847 0.4603 30 1 11.2098 0.4895 1.0218 31 1 4.1221 0.9699 0.5190 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604102471.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:18 Heat of formation + Delta-G solvation = -108.056190 kcal Electronic energy + Delta-G solvation = -19383.479249 eV Core-core repulsion = 16017.735191 eV Total energy + Delta-G solvation = -3365.744058 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.63214 -41.23286 -40.19781 -37.17138 -36.73231 -35.36296 -34.05324 -33.54276 -30.40077 -28.45927 -26.89370 -25.95567 -23.69174 -22.23794 -21.61736 -20.45491 -19.38339 -18.56503 -17.89671 -17.76142 -17.22518 -17.11146 -16.57720 -16.55617 -16.20525 -15.62756 -15.32002 -14.82086 -14.38690 -13.93389 -13.77015 -13.47876 -13.22115 -13.10941 -12.88106 -12.80966 -12.60754 -12.51095 -12.01281 -11.81656 -11.75033 -11.10220 -10.73391 -10.61313 -9.33743 -9.03354 -8.30358 -6.31245 -0.72492 0.60397 1.32482 1.43567 1.48221 1.59008 1.83372 2.17629 2.25687 2.40242 2.60446 2.93745 3.01634 3.81902 3.98014 4.10839 4.15919 4.38551 4.55117 4.75039 4.78913 4.87034 4.91865 5.16576 5.16996 5.21778 5.39091 5.46499 5.55284 5.96101 6.09944 6.33060 6.96002 7.04554 7.45773 7.93734 8.69925 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.018138 B = 0.006324 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.367945 B = 4426.601613 C = 5811.036456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.450 5.450 3 C -0.357 4.357 4 H 0.093 0.907 5 C 0.018 3.982 6 N -0.889 5.889 7 Si 0.966 3.034 8 H -0.250 1.250 9 H -0.277 1.277 10 H -0.274 1.274 11 C 0.535 3.465 12 O -0.634 6.634 13 C -0.239 4.239 14 C 0.067 3.933 15 O -0.153 6.153 16 C -0.059 4.059 17 C 0.057 3.943 18 C -0.223 4.223 19 C 0.525 3.475 20 O -0.559 6.559 21 O -0.501 6.501 22 C -0.094 4.094 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.274 0.726 27 H 0.248 0.752 28 H 0.163 0.837 29 H 0.153 0.847 30 H 0.426 0.574 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.869 -1.483 -2.456 13.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.167 5.167 3 C -0.485 4.485 4 H 0.110 0.890 5 C -0.187 4.187 6 N -0.524 5.524 7 Si 0.788 3.212 8 H -0.173 1.173 9 H -0.203 1.203 10 H -0.199 1.199 11 C 0.327 3.673 12 O -0.524 6.524 13 C -0.243 4.243 14 C -0.005 4.005 15 O -0.047 6.047 16 C -0.107 4.107 17 C 0.039 3.961 18 C -0.242 4.242 19 C 0.374 3.626 20 O -0.454 6.454 21 O -0.312 6.312 22 C -0.113 4.113 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.264 0.736 28 H 0.180 0.820 29 H 0.171 0.829 30 H 0.286 0.714 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 12.409 -2.010 -2.351 12.789 hybrid contribution -0.065 1.309 0.348 1.356 sum 12.344 -0.701 -2.003 12.525 Atomic orbital electron populations 1.21480 0.82081 1.00543 1.01125 1.43214 1.05180 1.04820 1.63495 1.19509 1.25676 0.93733 1.09549 0.89003 1.26398 0.95889 1.03241 0.93192 1.69988 1.39108 1.36469 1.06792 0.85286 0.78576 0.77757 0.79541 1.17302 1.20271 1.19883 1.18142 0.86799 0.83781 0.78615 1.90570 1.70899 1.32659 1.58270 1.20702 0.94561 0.95370 1.13661 1.25397 0.78898 1.00124 0.96123 1.83931 1.29151 1.23178 1.68478 1.19478 0.95234 0.81536 1.14415 1.20778 0.88313 0.99101 0.87942 1.21209 0.89843 1.02169 1.10965 1.19463 0.84894 0.85600 0.72652 1.90960 1.88135 1.17832 1.48463 1.85052 1.17367 1.44809 1.84018 1.23320 0.90264 1.02088 0.95670 0.92551 0.92731 0.92695 0.91672 0.73587 0.81962 0.82911 0.71391 0.80520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 4.30 10.28 127.77 1.31 5.61 16 2 N -0.45 -22.66 2.74 -662.64 -1.81 -24.47 16 3 C -0.36 -17.24 5.81 84.07 0.49 -16.75 16 4 H 0.09 4.27 6.91 -2.92 -0.02 4.25 16 5 C 0.02 0.88 4.91 84.94 0.42 1.29 16 6 N -0.89 -46.09 12.21 21.67 0.26 -45.83 16 7 Si 0.97 37.13 29.50 68.60 2.02 39.16 16 8 H -0.25 -9.02 7.11 99.48 0.71 -8.32 16 9 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 10 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 11 C 0.54 26.55 7.62 86.66 0.66 27.21 16 12 O -0.63 -33.38 16.26 -4.13 -0.07 -33.44 16 13 C -0.24 -9.95 6.03 -20.08 -0.12 -10.07 16 14 C 0.07 2.18 11.95 67.75 0.81 2.99 16 15 O -0.15 -4.59 10.10 -1.88 -0.02 -4.61 16 16 C -0.06 -1.90 6.77 22.72 0.15 -1.74 16 17 C 0.06 1.56 9.37 22.52 0.21 1.77 16 18 C -0.22 -5.33 9.54 22.44 0.21 -5.11 16 19 C 0.52 12.45 8.04 68.59 0.55 13.00 16 20 O -0.56 -16.64 16.84 19.20 0.32 -16.31 16 21 O -0.50 -8.61 13.54 -59.06 -0.80 -9.41 16 22 C -0.09 -3.64 9.07 22.72 0.21 -3.44 16 23 H 0.06 2.62 6.91 -2.39 -0.02 2.61 16 24 H 0.05 2.71 6.83 -2.39 -0.02 2.70 16 25 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 27 H 0.25 6.21 8.06 -2.91 -0.02 6.19 16 28 H 0.16 4.32 7.46 -2.91 -0.02 4.30 16 29 H 0.15 3.24 7.70 -2.91 -0.02 3.22 16 30 H 0.43 3.49 8.98 -74.06 -0.67 2.83 16 31 H 0.18 7.26 4.96 -2.91 -0.01 7.25 16 Total: -1.00 -65.26 286.16 5.35 -59.91 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.53 Total: 20.24 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 4.90 Total: 14.76 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: -1.55 Total: -70.30 kcal Atomic # 8 Polarization: -63.22 SS G_CDS: -0.56 Total: -63.78 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.02 Total: 39.16 kcal Total: -65.26 5.35 -59.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604102471.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.144 kcal (2) G-P(sol) polarization free energy of solvation -65.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds