Wall clock time and date at job start Mon Mar 30 2020 00:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46938 * 279.43037 * 3 2 1 5 5 C 1.36941 * 119.99739 * 263.96838 * 4 3 2 6 6 H 1.07998 * 120.00073 * 198.16713 * 5 4 3 7 7 C 1.38814 * 119.99956 * 18.16124 * 5 4 3 8 8 N 1.31618 * 119.99791 * 23.27546 * 7 5 4 9 9 Si 1.86804 * 119.99953 * 203.26892 * 7 5 4 10 10 H 1.48499 * 109.46873 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46808 * 120.00139 * 9 7 5 12 12 H 1.48504 * 109.46939 * 240.00182 * 9 7 5 13 13 C 1.46497 * 120.00497 * 83.96864 * 4 3 2 14 14 C 1.50704 * 109.46973 * 89.99538 * 13 4 3 15 15 C 1.38166 * 120.01971 * 259.72453 * 14 13 4 16 16 C 1.38224 * 120.07093 * 179.77094 * 15 14 13 17 17 C 1.38401 * 120.09471 * 0.50853 * 16 15 14 18 18 Cl 1.73601 * 119.98437 * 179.76969 * 17 16 15 19 19 C 1.38239 * 120.03146 * 359.74722 * 17 16 15 20 20 C 1.38723 * 120.01006 * 80.00346 * 14 13 4 21 21 O 1.35892 * 120.05214 * 0.02562 * 20 14 13 22 22 H 4.40640 * 5.51421 * 179.97438 * 4 1 2 23 23 H 1.08997 * 109.46985 * 159.42836 * 3 2 1 24 24 H 1.09001 * 109.47118 * 39.42307 * 3 2 1 25 25 H 0.97002 * 119.99524 * 180.02562 * 8 7 5 26 26 H 1.08991 * 109.47504 * 210.00121 * 13 4 3 27 27 H 1.08997 * 109.47004 * 330.00116 * 13 4 3 28 28 H 1.08007 * 119.96200 * 0.02562 * 15 14 13 29 29 H 1.08005 * 119.94960 * 180.25982 * 16 15 14 30 30 H 1.07997 * 120.03274 * 180.02562 * 19 17 16 31 31 H 0.96696 * 114.00357 * 89.99338 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.2254 1.3626 5 6 3.4797 0.8392 2.1517 6 1 4.1020 0.6876 3.0212 7 6 3.0298 2.1134 1.8338 8 7 1.9482 2.2652 1.0993 9 14 3.9595 3.6125 2.4485 10 1 5.1324 3.1745 3.2471 11 1 4.4229 4.4171 1.2895 12 1 3.0625 4.4376 3.2970 13 6 3.2536 -1.5904 1.8811 14 6 4.6266 -2.1280 1.5697 15 6 4.8081 -2.9821 0.4989 16 6 6.0678 -3.4720 0.2095 17 6 7.1485 -3.1168 0.9977 18 17 8.7283 -3.7385 0.6352 19 6 6.9707 -2.2667 2.0732 20 6 5.7079 -1.7700 2.3616 21 8 5.5302 -0.9350 3.4189 22 1 -1.0499 0.0002 0.0001 23 1 3.0089 0.9629 -0.3611 24 1 3.0097 -0.7930 -0.6526 25 1 1.6341 3.1556 0.8769 26 1 3.1021 -1.5836 2.9604 27 1 2.5005 -2.2240 1.4126 28 1 3.9654 -3.2640 -0.1151 29 1 6.2081 -4.1362 -0.6305 30 1 7.8141 -1.9891 2.6880 31 1 5.3256 -1.3883 4.2481 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653190895.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:59 Heat of formation + Delta-G solvation = 41.793445 kcal Electronic energy + Delta-G solvation = -17502.408097 eV Core-core repulsion = 14583.871171 eV Total energy + Delta-G solvation = -2918.536926 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.83094 -38.02468 -37.69518 -36.91907 -33.71225 -33.38459 -31.56292 -30.71688 -28.02807 -27.19153 -23.89418 -23.64555 -21.96173 -19.36083 -19.19838 -18.16074 -17.27282 -16.94256 -16.73460 -16.20512 -15.60905 -15.24643 -15.06450 -14.75440 -14.23830 -14.05272 -13.44197 -13.30130 -13.16518 -12.89551 -12.76464 -12.37569 -12.18576 -12.02491 -11.92808 -11.82858 -11.31121 -10.77330 -10.63580 -10.30422 -9.76703 -9.39147 -8.86618 -7.76560 -5.14981 0.20756 0.33202 1.14719 1.45193 1.50496 1.59933 2.32756 2.55027 2.61698 2.69676 3.36134 3.42592 3.89206 3.97003 4.06711 4.15295 4.17512 4.43097 4.71008 4.73549 4.90323 4.98011 5.05860 5.22879 5.29148 5.38457 5.65632 5.68038 5.79446 5.93565 6.39066 6.99938 7.19135 7.38383 7.90487 8.31702 9.25895 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021179 B = 0.006301 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.717555 B = 4442.953946 C = 5268.134362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.133 4.133 3 C 0.271 3.729 4 N -0.587 5.587 5 C -0.244 4.244 6 H 0.094 0.906 7 C -0.054 4.054 8 N -0.918 5.918 9 Si 0.946 3.054 10 H -0.272 1.272 11 H -0.299 1.299 12 H -0.300 1.300 13 C 0.189 3.811 14 C -0.121 4.121 15 C -0.088 4.088 16 C -0.121 4.121 17 C -0.032 4.032 18 Cl -0.069 7.069 19 C -0.151 4.151 20 C 0.130 3.870 21 O -0.494 6.494 22 H 0.221 0.779 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.242 0.758 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.148 0.852 29 H 0.154 0.846 30 H 0.141 0.859 31 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.955 -13.633 -0.129 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 C -0.136 4.136 3 C 0.145 3.855 4 N -0.306 5.306 5 C -0.374 4.374 6 H 0.111 0.889 7 C -0.249 4.249 8 N -0.564 5.564 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.226 1.226 12 H -0.228 1.228 13 C 0.063 3.937 14 C -0.125 4.125 15 C -0.107 4.107 16 C -0.139 4.139 17 C -0.059 4.059 18 Cl -0.040 7.040 19 C -0.170 4.170 20 C 0.084 3.916 21 O -0.306 6.306 22 H 0.238 0.762 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.165 0.835 29 H 0.172 0.828 30 H 0.158 0.842 31 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 8.170 -13.095 -0.569 15.445 hybrid contribution 0.064 1.051 0.685 1.256 sum 8.234 -12.044 0.115 14.590 Atomic orbital electron populations 1.24997 0.96348 1.06271 1.03409 1.24625 0.96056 0.95516 0.97402 1.17630 0.82910 0.98896 0.86029 1.44155 1.74212 1.01347 1.10915 1.19825 1.23056 0.85947 1.08572 0.88883 1.25461 0.97387 1.00091 1.01965 1.70303 1.21367 1.20638 1.44110 0.85513 0.78825 0.80990 0.76986 1.19636 1.22613 1.22759 1.19683 0.90682 0.85027 0.98265 1.21382 0.98040 0.96179 0.96857 1.21117 0.97556 0.96051 0.95971 1.21222 0.90863 1.01636 1.00190 1.20730 0.86943 1.00110 0.98068 1.98349 1.25201 1.86159 1.94312 1.21336 0.97829 0.98638 0.99171 1.18228 0.91342 0.90899 0.91120 1.84970 1.92557 1.33692 1.19396 0.76183 0.92227 0.91920 0.94885 0.92522 0.92249 0.83459 0.82808 0.84151 0.74181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.83 19.25 74.32 1.43 -11.40 16 2 C -0.13 -6.36 11.55 31.12 0.36 -6.00 16 3 C 0.27 12.69 5.41 84.57 0.46 13.14 16 4 N -0.59 -27.54 2.47 -716.91 -1.77 -29.31 16 5 C -0.24 -12.86 9.38 84.03 0.79 -12.07 16 6 H 0.09 4.82 5.83 -2.91 -0.02 4.80 16 7 C -0.05 -2.99 4.80 84.86 0.41 -2.59 16 8 N -0.92 -53.30 9.63 21.65 0.21 -53.09 16 9 Si 0.95 45.92 29.61 68.60 2.03 47.95 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 12 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 13 C 0.19 7.05 5.49 85.63 0.47 7.52 16 14 C -0.12 -3.89 5.48 -19.76 -0.11 -4.00 16 15 C -0.09 -2.34 9.66 22.25 0.21 -2.13 16 16 C -0.12 -2.88 9.83 22.31 0.22 -2.66 16 17 C -0.03 -0.81 6.32 22.31 0.14 -0.66 16 18 Cl -0.07 -1.54 28.95 -2.72 -0.08 -1.62 16 19 C -0.15 -4.20 9.77 22.39 0.22 -3.98 16 20 C 0.13 4.11 6.68 22.50 0.15 4.26 16 21 O -0.49 -16.04 10.45 -92.34 -0.96 -17.00 16 22 H 0.22 7.84 7.80 -4.42 -0.03 7.81 16 23 H 0.06 3.18 6.53 -2.39 -0.02 3.17 16 24 H 0.06 2.51 8.12 -2.39 -0.02 2.49 16 25 H 0.24 13.97 8.31 -92.71 -0.77 13.20 16 26 H 0.06 2.11 7.75 -2.39 -0.02 2.09 16 27 H 0.06 2.06 7.93 -2.39 -0.02 2.04 16 28 H 0.15 3.35 8.03 -2.91 -0.02 3.33 16 29 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 30 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 31 H 0.40 8.78 9.06 -74.06 -0.67 8.11 16 Total: -1.00 -64.95 291.53 4.66 -60.30 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.48 Total: 13.34 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 4.75 Total: -20.57 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -1.56 Total: -82.40 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.96 Total: -17.00 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -64.95 4.66 -60.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653190895.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.090 kcal (2) G-P(sol) polarization free energy of solvation -64.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds