Wall clock time and date at job start Mon Mar 30 2020 00:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 N 1.46904 * 109.46891 * 180.02562 * 9 7 2 11 11 C 1.48565 * 111.00002 * 285.41873 * 10 9 7 12 12 C 1.54372 * 104.59312 * 200.95837 * 11 10 9 13 13 C 1.54257 * 105.06232 * 23.85367 * 12 11 10 14 14 C 1.48561 * 111.00001 * 170.00421 * 10 9 7 15 15 H 1.08996 * 110.41384 * 40.14416 * 14 10 9 16 16 C 1.50705 * 110.40881 * 277.81939 * 14 10 9 17 17 C 1.38260 * 119.99394 * 140.00105 * 16 14 10 18 18 C 1.38220 * 120.02754 * 179.97438 * 17 16 14 19 19 C 1.38241 * 120.00911 * 0.02562 * 18 17 16 20 20 C 1.38329 * 119.98907 * 359.97438 * 19 18 17 21 21 Cl 1.73604 * 120.01105 * 180.02562 * 20 19 18 22 22 C 1.38200 * 119.99141 * 319.72039 * 16 14 10 23 23 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 25 25 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 26 26 H 1.08997 * 110.40902 * 319.74143 * 11 10 9 27 27 H 1.09005 * 110.40863 * 82.18262 * 11 10 9 28 28 H 1.08999 * 110.32613 * 264.95584 * 12 11 10 29 29 H 1.09002 * 110.40763 * 142.79524 * 12 11 10 30 30 H 1.08998 * 110.32961 * 241.10126 * 13 12 11 31 31 H 1.09007 * 110.40932 * 118.93922 * 13 12 11 32 32 H 1.07998 * 119.98746 * 359.97438 * 17 16 14 33 33 H 1.07997 * 119.99433 * 179.97438 * 18 17 16 34 34 H 1.08005 * 120.00295 * 180.02562 * 19 18 17 35 35 H 1.07997 * 120.00337 * 0.02689 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 7 2.2056 -3.6158 0.0041 11 6 2.8267 -3.7838 -1.3350 12 6 3.3444 -5.2381 -1.3439 13 6 2.4810 -5.9773 -0.3010 14 6 1.5143 -4.9075 0.2503 15 1 0.5650 -4.9386 -0.2844 16 6 1.2915 -5.1112 1.7268 17 6 0.1032 -5.6552 2.1779 18 6 -0.1016 -5.8428 3.5319 19 6 0.8816 -5.4861 4.4359 20 6 2.0707 -4.9418 3.9851 21 17 3.3061 -4.4943 5.1198 22 6 2.2775 -4.7596 2.6292 23 1 -0.4850 0.8401 0.0004 24 1 0.6281 -2.5552 0.8979 25 1 0.6206 -2.5586 -0.8820 26 1 2.0837 -3.6398 -2.1194 27 1 3.6539 -3.0851 -1.4607 28 1 4.3950 -5.2678 -1.0552 29 1 3.2107 -5.6831 -2.3300 30 1 3.1078 -6.3699 0.4997 31 1 1.9221 -6.7849 -0.7739 32 1 -0.6653 -5.9336 1.4721 33 1 -1.0302 -6.2674 3.8838 34 1 0.7216 -5.6332 5.4939 35 1 3.2072 -4.3385 2.2763 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051421489.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:34 Heat of formation + Delta-G solvation = 14.998883 kcal Electronic energy + Delta-G solvation = -17808.521469 eV Core-core repulsion = 15024.655738 eV Total energy + Delta-G solvation = -2783.865731 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.53107 -37.70081 -36.12394 -33.13136 -31.55423 -30.93436 -30.42402 -27.33487 -26.33936 -22.99358 -22.40356 -21.86077 -20.16833 -19.59597 -16.92607 -16.19413 -15.56375 -15.32705 -14.79233 -14.55975 -14.11629 -13.53054 -13.32108 -13.09675 -12.86727 -12.54324 -11.96589 -11.90724 -11.67069 -11.24655 -11.16225 -10.96702 -10.91372 -10.68921 -10.64994 -10.42158 -10.34240 -10.13710 -9.83306 -9.24245 -8.52580 -8.41379 -8.37109 -7.48746 -6.01461 -4.02563 1.44323 1.59877 2.40400 3.34604 3.38475 3.41746 3.90642 4.43394 4.75591 4.99346 5.12904 5.19292 5.27227 5.34063 5.42202 5.45874 5.62880 5.67384 5.82753 5.95351 5.99392 6.14160 6.17101 6.26872 6.37856 6.54314 6.56464 6.59125 6.63578 6.87628 7.07399 7.18791 7.27213 7.77351 7.98488 8.15105 8.49166 9.04475 9.61470 11.09501 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.006826 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.241524 B = 4100.889047 C = 4916.034968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.185 3.815 10 N -0.499 5.499 11 C 0.045 3.955 12 C -0.126 4.126 13 C -0.113 4.113 14 C 0.092 3.908 15 H 0.054 0.946 16 C -0.042 4.042 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.121 4.121 20 C -0.037 4.037 21 Cl -0.082 7.082 22 C -0.071 4.071 23 H 0.261 0.739 24 H 0.030 0.970 25 H -0.006 1.006 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.492 -13.560 4.036 14.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.060 3.940 10 N -0.223 5.223 11 C -0.083 4.083 12 C -0.164 4.164 13 C -0.151 4.151 14 C -0.017 4.017 15 H 0.072 0.928 16 C -0.043 4.043 17 C -0.133 4.133 18 C -0.132 4.132 19 C -0.140 4.140 20 C -0.064 4.064 21 Cl -0.053 7.053 22 C -0.090 4.090 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.011 0.989 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.837 -13.247 4.545 14.290 hybrid contribution -0.289 1.016 -0.456 1.150 sum 2.548 -12.231 4.088 13.146 Atomic orbital electron populations 1.69949 1.06044 1.26831 1.51013 1.24979 0.94853 0.99269 0.95463 0.86576 0.79466 0.82814 0.78660 1.20291 1.21378 1.20143 1.21058 0.93444 0.89791 1.50026 0.91986 1.19864 0.90190 0.87763 0.96214 1.65445 1.29734 1.01327 1.25837 1.22917 0.99197 0.94938 0.91280 1.22349 0.99752 0.96169 0.98113 1.22316 0.97421 0.96836 0.98497 1.21531 0.96770 0.92617 0.90739 0.92772 1.19691 0.92979 0.96384 0.95281 1.21123 0.96943 0.99539 0.95713 1.20943 0.98620 1.00779 0.92882 1.20929 0.92529 1.00484 1.00091 1.20928 0.91243 1.03493 0.90714 1.98344 1.54178 1.91646 1.61168 1.20974 1.00958 0.97259 0.89817 0.92915 0.95208 0.98872 0.94441 0.90264 0.91532 0.92125 0.91323 0.91925 0.85925 0.85607 0.85643 0.83966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.50 -14.22 8.97 -34.44 -0.31 -14.53 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.19 4.80 4.54 -4.98 -0.02 4.77 16 10 N -0.50 -10.46 4.32 -224.93 -0.97 -11.43 16 11 C 0.04 0.83 6.12 -2.18 -0.01 0.82 16 12 C -0.13 -1.80 7.00 -25.35 -0.18 -1.98 16 13 C -0.11 -1.60 6.52 -25.35 -0.17 -1.77 16 14 C 0.09 1.61 2.45 -67.22 -0.16 1.45 16 15 H 0.05 0.97 7.88 -51.93 -0.41 0.56 16 16 C -0.04 -0.72 4.53 -104.63 -0.47 -1.19 16 17 C -0.11 -1.70 9.68 -39.58 -0.38 -2.08 16 18 C -0.11 -1.52 10.05 -39.59 -0.40 -1.92 16 19 C -0.12 -1.70 9.83 -39.55 -0.39 -2.09 16 20 C -0.04 -0.59 6.32 -39.50 -0.25 -0.84 16 21 Cl -0.08 -1.22 28.96 -51.86 -1.50 -2.72 16 22 C -0.07 -1.23 8.93 -39.55 -0.35 -1.59 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.03 0.84 7.78 -51.93 -0.40 0.44 16 25 H -0.01 -0.18 7.77 -51.93 -0.40 -0.58 16 26 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 27 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.95 7.70 -51.93 -0.40 0.55 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.12 1.59 8.04 -52.49 -0.42 1.17 16 33 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 35 H 0.14 2.62 7.76 -52.49 -0.41 2.21 16 LS Contribution 307.30 15.07 4.63 4.63 Total: -1.00 -29.82 307.30 -10.25 -40.07 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -4.93 Total: -1.83 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -3.20 Total: -19.46 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.24 Total: -37.59 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.50 Total: -2.72 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.82 -10.25 -40.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051421489.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.072 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds