Wall clock time and date at job start Mon Mar 30 2020 00:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 N 1.46904 * 109.46891 * 180.02562 * 9 7 2 11 11 C 1.48565 * 111.00002 * 285.41873 * 10 9 7 12 12 C 1.54372 * 104.59312 * 200.95837 * 11 10 9 13 13 C 1.54257 * 105.06232 * 23.85367 * 12 11 10 14 14 C 1.48561 * 111.00001 * 170.00421 * 10 9 7 15 15 H 1.08996 * 110.41384 * 40.14416 * 14 10 9 16 16 C 1.50705 * 110.40881 * 277.81939 * 14 10 9 17 17 C 1.38260 * 119.99394 * 140.00105 * 16 14 10 18 18 C 1.38220 * 120.02754 * 179.97438 * 17 16 14 19 19 C 1.38241 * 120.00911 * 0.02562 * 18 17 16 20 20 C 1.38329 * 119.98907 * 359.97438 * 19 18 17 21 21 Cl 1.73604 * 120.01105 * 180.02562 * 20 19 18 22 22 C 1.38200 * 119.99141 * 319.72039 * 16 14 10 23 23 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 25 25 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 26 26 H 1.08997 * 110.40902 * 319.74143 * 11 10 9 27 27 H 1.09005 * 110.40863 * 82.18262 * 11 10 9 28 28 H 1.08999 * 110.32613 * 264.95584 * 12 11 10 29 29 H 1.09002 * 110.40763 * 142.79524 * 12 11 10 30 30 H 1.08998 * 110.32961 * 241.10126 * 13 12 11 31 31 H 1.09007 * 110.40932 * 118.93922 * 13 12 11 32 32 H 1.07998 * 119.98746 * 359.97438 * 17 16 14 33 33 H 1.07997 * 119.99433 * 179.97438 * 18 17 16 34 34 H 1.08005 * 120.00295 * 180.02562 * 19 18 17 35 35 H 1.07997 * 120.00337 * 0.02689 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 7 2.2056 -3.6158 0.0041 11 6 2.8267 -3.7838 -1.3350 12 6 3.3444 -5.2381 -1.3439 13 6 2.4810 -5.9773 -0.3010 14 6 1.5143 -4.9075 0.2503 15 1 0.5650 -4.9386 -0.2844 16 6 1.2915 -5.1112 1.7268 17 6 0.1032 -5.6552 2.1779 18 6 -0.1016 -5.8428 3.5319 19 6 0.8816 -5.4861 4.4359 20 6 2.0707 -4.9418 3.9851 21 17 3.3061 -4.4943 5.1198 22 6 2.2775 -4.7596 2.6292 23 1 -0.4850 0.8401 0.0004 24 1 0.6281 -2.5552 0.8979 25 1 0.6206 -2.5586 -0.8820 26 1 2.0837 -3.6398 -2.1194 27 1 3.6539 -3.0851 -1.4607 28 1 4.3950 -5.2678 -1.0552 29 1 3.2107 -5.6831 -2.3300 30 1 3.1078 -6.3699 0.4997 31 1 1.9221 -6.7849 -0.7739 32 1 -0.6653 -5.9336 1.4721 33 1 -1.0302 -6.2674 3.8838 34 1 0.7216 -5.6332 5.4939 35 1 3.2072 -4.3385 2.2763 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051421489.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:34 Heat of formation + Delta-G solvation = -1.424749 kcal Electronic energy + Delta-G solvation = -17809.233651 eV Core-core repulsion = 15024.655738 eV Total energy + Delta-G solvation = -2784.577913 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.82444 -39.05770 -37.31703 -35.18995 -32.83523 -32.63312 -31.60163 -28.64637 -28.31505 -24.65619 -23.78076 -23.20737 -21.59264 -20.99480 -18.56171 -17.91816 -17.08552 -16.64861 -16.31714 -15.90603 -15.71033 -14.95607 -14.58766 -14.50908 -14.39141 -14.08868 -13.65005 -13.42081 -13.08717 -12.87161 -12.60003 -12.43723 -12.33484 -12.22048 -12.08719 -11.97071 -11.83178 -11.60795 -11.34241 -11.29751 -10.61480 -9.72850 -9.56116 -9.21267 -8.21896 -6.31543 0.25630 0.41551 1.21146 1.37946 1.41410 1.49032 2.38288 2.71501 3.10482 3.33407 3.72695 3.85844 4.01912 4.09359 4.20122 4.27265 4.36068 4.41643 4.60934 4.74641 4.76673 4.88362 4.97123 5.00243 5.08055 5.08934 5.21070 5.25859 5.36294 5.40148 5.43718 5.58625 5.69948 5.92074 6.04110 6.25790 6.52077 6.83676 7.37903 8.88990 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.006826 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.241524 B = 4100.889047 C = 4916.034968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.208 3.792 10 N -0.509 5.509 11 C 0.039 3.961 12 C -0.113 4.113 13 C -0.103 4.103 14 C 0.089 3.911 15 H 0.045 0.955 16 C -0.063 4.063 17 C -0.122 4.122 18 C -0.105 4.105 19 C -0.120 4.120 20 C -0.050 4.050 21 Cl -0.078 7.078 22 C -0.092 4.092 23 H 0.264 0.736 24 H -0.003 1.003 25 H -0.036 1.036 26 H 0.024 0.976 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.771 -14.694 4.509 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.081 3.919 10 N -0.233 5.233 11 C -0.089 4.089 12 C -0.151 4.151 13 C -0.141 4.141 14 C -0.020 4.020 15 H 0.063 0.937 16 C -0.064 4.064 17 C -0.141 4.141 18 C -0.123 4.123 19 C -0.139 4.139 20 C -0.076 4.076 21 Cl -0.050 7.050 22 C -0.111 4.111 23 H 0.073 0.927 24 H 0.015 0.985 25 H -0.019 1.019 26 H 0.043 0.957 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.157 0.843 33 H 0.181 0.819 34 H 0.170 0.830 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.134 -14.403 5.013 15.569 hybrid contribution -0.413 1.324 -0.570 1.499 sum 2.721 -13.080 4.442 14.079 Atomic orbital electron populations 1.70076 1.07632 1.27866 1.51771 1.25884 0.95739 1.03064 0.94852 0.85498 0.78261 0.78183 0.79075 1.19079 1.20677 1.19626 1.21385 0.93469 0.91172 1.49983 0.92296 1.19398 0.90062 0.89342 0.93108 1.65328 1.28821 1.01778 1.27334 1.22974 0.98316 0.97956 0.89660 1.22304 1.00166 0.92850 0.99781 1.22309 0.96880 0.96339 0.98598 1.21639 0.96935 0.91692 0.91692 0.93680 1.19764 0.94043 0.97734 0.94811 1.21406 0.96425 0.99166 0.97081 1.21375 0.99641 0.99302 0.91981 1.21300 0.91639 0.99248 1.01675 1.21086 0.92227 1.03990 0.90308 1.98338 1.54216 1.91681 1.60736 1.20859 1.00622 0.98736 0.90892 0.92727 0.98468 1.01873 0.95743 0.91515 0.90353 0.89388 0.90710 0.89167 0.84281 0.81915 0.83020 0.86030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.97 45.37 29.54 68.60 2.03 47.39 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.52 -30.36 8.97 25.60 0.23 -30.13 16 8 H 0.06 3.38 7.81 -2.92 -0.02 3.36 16 9 C 0.21 11.29 4.54 85.56 0.39 11.68 16 10 N -0.51 -22.04 4.32 -865.55 -3.74 -25.78 16 11 C 0.04 1.47 6.12 86.45 0.53 2.00 16 12 C -0.11 -3.05 7.00 31.49 0.22 -2.83 16 13 C -0.10 -2.76 6.52 31.49 0.21 -2.56 16 14 C 0.09 3.13 2.45 44.32 0.11 3.24 16 15 H 0.05 1.65 7.88 -2.39 -0.02 1.63 16 16 C -0.06 -2.13 4.53 -19.87 -0.09 -2.22 16 17 C -0.12 -3.48 9.68 22.27 0.22 -3.26 16 18 C -0.11 -2.53 10.05 22.27 0.22 -2.31 16 19 C -0.12 -3.10 9.83 22.29 0.22 -2.89 16 20 C -0.05 -1.54 6.32 22.32 0.14 -1.40 16 21 Cl -0.08 -2.28 28.96 -2.72 -0.08 -2.36 16 22 C -0.09 -3.23 8.93 22.29 0.20 -3.03 16 23 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 24 H 0.00 -0.17 7.78 -2.39 -0.02 -0.19 16 25 H -0.04 -2.14 7.77 -2.39 -0.02 -2.16 16 26 H 0.02 0.97 7.75 -2.39 -0.02 0.95 16 27 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 1.93 7.70 -2.39 -0.02 1.91 16 31 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.14 3.39 8.04 -2.91 -0.02 3.37 16 33 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 34 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 35 H 0.12 4.66 7.76 -2.91 -0.02 4.64 16 Total: -1.00 -66.38 307.30 2.61 -63.77 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.06 Total: 6.95 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 3.05 Total: -33.08 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -3.46 Total: -82.67 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -0.08 Total: -2.36 kcal Total: -66.38 2.61 -63.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051421489.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.349 kcal (2) G-P(sol) polarization free energy of solvation -66.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds