Wall clock time and date at job start Mon Mar 30 2020 00:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00023 * 2 1 4 4 H 1.48502 * 109.46988 * 269.99663 * 3 2 1 5 5 H 1.48508 * 109.47133 * 29.99431 * 3 2 1 6 6 H 1.48499 * 109.47379 * 149.99394 * 3 2 1 7 7 C 1.37881 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00253 * 173.60164 * 7 2 1 9 9 C 1.50701 * 119.99535 * 353.59875 * 7 2 1 10 10 C 1.52999 * 115.54940 * 85.44932 * 9 7 2 11 11 N 1.46893 * 109.47372 * 65.04198 * 10 9 7 12 12 C 1.46904 * 111.00455 * 185.35034 * 11 10 9 13 13 C 1.50693 * 109.47329 * 180.02562 * 12 11 10 14 14 C 1.38235 * 120.00811 * 259.99955 * 13 12 11 15 15 C 1.38219 * 120.01506 * 179.97438 * 14 13 12 16 16 C 1.38268 * 120.02664 * 0.02562 * 15 14 13 17 17 C 1.38194 * 120.01050 * 0.02562 * 16 15 14 18 18 C 1.38334 * 120.00600 * 80.00259 * 13 12 11 19 19 Cl 1.73601 * 120.01038 * 359.97438 * 18 13 12 20 20 C 1.52998 * 117.49643 * 231.11283 * 9 7 2 21 21 C 1.52997 * 117.49981 * 299.77586 * 9 7 2 22 22 H 0.97001 * 120.00563 * 0.02562 * 1 2 3 23 23 H 1.09009 * 109.47088 * 305.04629 * 10 9 7 24 24 H 1.08994 * 109.47345 * 185.04934 * 10 9 7 25 25 H 1.00900 * 110.99847 * 61.40214 * 11 10 9 26 26 H 1.09010 * 109.46615 * 60.00306 * 12 11 10 27 27 H 1.08997 * 109.47128 * 300.00937 * 12 11 10 28 28 H 1.07996 * 119.99368 * 0.02562 * 14 13 12 29 29 H 1.08001 * 119.99190 * 180.27422 * 15 14 13 30 30 H 1.08001 * 119.99662 * 180.02562 * 16 15 14 31 31 H 1.07998 * 120.00496 * 180.02562 * 17 16 15 32 32 H 1.09007 * 117.49515 * 215.00453 * 20 9 7 33 33 H 1.08996 * 117.50370 * 0.02591 * 20 9 7 34 34 H 1.08996 * 117.49854 * 359.97239 * 21 9 7 35 35 H 1.09002 * 117.49761 * 144.97912 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1970 -0.1037 9 6 1.2580 -2.4950 0.1466 10 6 0.7038 -3.0870 -1.1507 11 7 1.8169 -3.4589 -2.0341 12 6 1.3229 -3.9137 -3.3407 13 6 2.4907 -4.2862 -4.2174 14 6 2.9450 -3.4008 -5.1768 15 6 4.0164 -3.7421 -5.9806 16 6 4.6341 -4.9694 -5.8259 17 6 4.1801 -5.8558 -4.8678 18 6 3.1082 -5.5143 -4.0622 19 17 2.5385 -6.6265 -2.8571 20 6 1.7457 -3.4728 1.2176 21 6 0.4400 -2.7006 1.4231 22 1 -0.4851 0.8400 -0.0004 23 1 0.0763 -2.3476 -1.6486 24 1 0.1103 -3.9721 -0.9218 25 1 2.4008 -4.1606 -1.6042 26 1 0.7545 -3.1124 -3.8132 27 1 0.6801 -4.7831 -3.2035 28 1 2.4633 -2.4418 -5.2978 29 1 4.3739 -3.0483 -6.7270 30 1 5.4715 -5.2355 -6.4540 31 1 4.6628 -6.8143 -4.7468 32 1 1.6715 -4.5379 0.9978 33 1 2.6061 -3.1750 1.8168 34 1 0.4421 -1.8951 2.1574 35 1 -0.4933 -3.2574 1.3385 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:55 Heat of formation + Delta-G solvation = 39.190297 kcal Electronic energy + Delta-G solvation = -17442.826555 eV Core-core repulsion = 14660.009843 eV Total energy + Delta-G solvation = -2782.816712 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.39038 -36.95627 -36.36652 -34.58168 -31.80494 -31.05009 -30.60949 -26.39415 -25.20792 -23.19540 -22.64443 -21.22635 -20.83495 -18.94632 -17.06108 -16.18720 -15.63200 -15.28633 -14.69583 -14.34436 -14.18340 -13.77236 -13.49303 -13.33077 -12.98461 -12.66917 -11.92894 -11.64255 -11.50086 -11.34296 -11.21520 -11.10502 -10.88373 -10.65260 -10.58569 -10.38551 -10.11250 -9.43142 -8.89917 -8.74136 -8.63115 -8.32004 -8.00017 -7.50369 -5.91033 -3.91939 1.18654 1.31012 2.20567 3.37057 3.43281 3.47750 3.65134 4.51568 4.74474 4.81800 4.95213 5.12359 5.31352 5.37700 5.39593 5.52834 5.63417 5.76401 5.93589 6.07245 6.20950 6.22675 6.38880 6.40821 6.53620 6.57446 6.69328 6.79760 6.82967 6.92277 7.17193 7.52704 7.62162 7.96435 8.02274 8.18834 8.61564 9.07124 9.70733 11.18972 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.005787 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.779036 B = 4837.542842 C = 5748.902202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.467 4.467 8 H 0.059 0.941 9 C 0.052 3.948 10 C 0.108 3.892 11 N -0.660 5.660 12 C 0.091 3.909 13 C -0.058 4.058 14 C -0.089 4.089 15 C -0.117 4.117 16 C -0.117 4.117 17 C -0.114 4.114 18 C -0.033 4.033 19 Cl -0.072 7.072 20 C -0.216 4.216 21 C -0.158 4.158 22 H 0.257 0.743 23 H 0.077 0.923 24 H -0.005 1.005 25 H 0.332 0.668 26 H 0.081 0.919 27 H 0.035 0.965 28 H 0.134 0.866 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.197 -10.630 -10.769 15.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.505 4.505 8 H 0.077 0.923 9 C 0.052 3.948 10 C -0.020 4.020 11 N -0.291 5.291 12 C -0.038 4.038 13 C -0.059 4.059 14 C -0.107 4.107 15 C -0.135 4.135 16 C -0.135 4.135 17 C -0.133 4.133 18 C -0.060 4.060 19 Cl -0.043 7.043 20 C -0.253 4.253 21 C -0.196 4.196 22 H 0.066 0.934 23 H 0.095 0.905 24 H 0.013 0.987 25 H 0.150 0.850 26 H 0.099 0.901 27 H 0.053 0.947 28 H 0.152 0.848 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.072 -9.944 -10.856 15.571 hybrid contribution 0.020 -0.057 0.379 0.384 sum 5.093 -10.002 -10.477 15.354 Atomic orbital electron populations 1.70006 1.05782 1.26079 1.50600 1.24929 0.94743 0.98661 0.95126 0.86677 0.79935 0.83837 0.77981 1.20824 1.21495 1.20029 1.20308 0.92830 0.88384 1.49017 0.92295 1.18811 0.97149 0.93719 0.85160 1.21560 0.90526 0.95867 0.94094 1.60388 1.21853 1.44647 1.02178 1.20939 0.92566 0.98991 0.91309 1.19870 0.97628 0.91800 0.96593 1.21098 0.96394 0.98961 0.94283 1.21243 0.96065 0.96665 0.99519 1.21042 1.00127 0.94096 0.98275 1.20973 0.95874 1.00528 0.95877 1.20879 0.98282 0.92291 0.94536 1.98364 1.88597 1.61895 1.55482 1.22993 0.98521 0.95455 1.08370 1.22515 0.91943 1.01140 1.03972 0.93372 0.90472 0.98691 0.85014 0.90065 0.94720 0.84821 0.85584 0.85505 0.85323 0.92231 0.90525 0.90060 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 12.91 55.43 0.72 -24.58 16 2 C 0.07 1.85 5.39 -17.82 -0.10 1.76 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.47 -12.89 8.74 -34.44 -0.30 -13.19 16 8 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 9 C 0.05 1.30 1.55 -155.66 -0.24 1.06 16 10 C 0.11 2.44 5.51 -3.83 -0.02 2.42 16 11 N -0.66 -13.29 6.37 -115.06 -0.73 -14.02 16 12 C 0.09 1.53 5.24 -4.98 -0.03 1.50 16 13 C -0.06 -0.86 5.40 -104.59 -0.56 -1.43 16 14 C -0.09 -1.19 9.67 -39.59 -0.38 -1.57 16 15 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 16 C -0.12 -1.24 10.05 -39.59 -0.40 -1.63 16 17 C -0.11 -1.34 9.83 -39.55 -0.39 -1.73 16 18 C -0.03 -0.46 6.31 -39.50 -0.25 -0.71 16 19 Cl -0.07 -1.00 26.76 -51.86 -1.39 -2.39 16 20 C -0.22 -4.83 9.96 -26.69 -0.27 -5.09 16 21 C -0.16 -3.77 9.41 -26.69 -0.25 -4.03 16 22 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 23 H 0.08 1.92 8.13 -51.92 -0.42 1.50 16 24 H 0.00 -0.11 8.09 -51.93 -0.42 -0.53 16 25 H 0.33 6.55 7.99 -39.29 -0.31 6.23 16 26 H 0.08 1.36 8.01 -51.92 -0.42 0.94 16 27 H 0.03 0.57 7.35 -51.93 -0.38 0.18 16 28 H 0.13 1.70 8.04 -52.49 -0.42 1.28 16 29 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 33 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 34 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 35 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 314.48 15.07 4.74 4.74 Total: -1.00 -28.88 314.48 -10.15 -39.03 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -4.88 Total: 5.02 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -3.58 Total: -24.35 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: -0.02 Total: -38.60 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.39 Total: -2.39 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.88 -10.15 -39.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.216 kcal (2) G-P(sol) polarization free energy of solvation -28.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds