Wall clock time and date at job start Mon Mar 30 2020 00:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00023 * 2 1 4 4 H 1.48502 * 109.46988 * 269.99663 * 3 2 1 5 5 H 1.48508 * 109.47133 * 29.99431 * 3 2 1 6 6 H 1.48499 * 109.47379 * 149.99394 * 3 2 1 7 7 C 1.37881 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00253 * 173.60164 * 7 2 1 9 9 C 1.50701 * 119.99535 * 353.59875 * 7 2 1 10 10 C 1.52999 * 115.54940 * 85.44932 * 9 7 2 11 11 N 1.46893 * 109.47372 * 65.04198 * 10 9 7 12 12 C 1.46904 * 111.00455 * 185.35034 * 11 10 9 13 13 C 1.50693 * 109.47329 * 180.02562 * 12 11 10 14 14 C 1.38235 * 120.00811 * 259.99955 * 13 12 11 15 15 C 1.38219 * 120.01506 * 179.97438 * 14 13 12 16 16 C 1.38268 * 120.02664 * 0.02562 * 15 14 13 17 17 C 1.38194 * 120.01050 * 0.02562 * 16 15 14 18 18 C 1.38334 * 120.00600 * 80.00259 * 13 12 11 19 19 Cl 1.73601 * 120.01038 * 359.97438 * 18 13 12 20 20 C 1.52998 * 117.49643 * 231.11283 * 9 7 2 21 21 C 1.52997 * 117.49981 * 299.77586 * 9 7 2 22 22 H 0.97001 * 120.00563 * 0.02562 * 1 2 3 23 23 H 1.09009 * 109.47088 * 305.04629 * 10 9 7 24 24 H 1.08994 * 109.47345 * 185.04934 * 10 9 7 25 25 H 1.00900 * 110.99847 * 61.40214 * 11 10 9 26 26 H 1.09010 * 109.46615 * 60.00306 * 12 11 10 27 27 H 1.08997 * 109.47128 * 300.00937 * 12 11 10 28 28 H 1.07996 * 119.99368 * 0.02562 * 14 13 12 29 29 H 1.08001 * 119.99190 * 180.27422 * 15 14 13 30 30 H 1.08001 * 119.99662 * 180.02562 * 16 15 14 31 31 H 1.07998 * 120.00496 * 180.02562 * 17 16 15 32 32 H 1.09007 * 117.49515 * 215.00453 * 20 9 7 33 33 H 1.08996 * 117.50370 * 0.02591 * 20 9 7 34 34 H 1.08996 * 117.49854 * 359.97239 * 21 9 7 35 35 H 1.09002 * 117.49761 * 144.97912 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1970 -0.1037 9 6 1.2580 -2.4950 0.1466 10 6 0.7038 -3.0870 -1.1507 11 7 1.8169 -3.4589 -2.0341 12 6 1.3229 -3.9137 -3.3407 13 6 2.4907 -4.2862 -4.2174 14 6 2.9450 -3.4008 -5.1768 15 6 4.0164 -3.7421 -5.9806 16 6 4.6341 -4.9694 -5.8259 17 6 4.1801 -5.8558 -4.8678 18 6 3.1082 -5.5143 -4.0622 19 17 2.5385 -6.6265 -2.8571 20 6 1.7457 -3.4728 1.2176 21 6 0.4400 -2.7006 1.4231 22 1 -0.4851 0.8400 -0.0004 23 1 0.0763 -2.3476 -1.6486 24 1 0.1103 -3.9721 -0.9218 25 1 2.4008 -4.1606 -1.6042 26 1 0.7545 -3.1124 -3.8132 27 1 0.6801 -4.7831 -3.2035 28 1 2.4633 -2.4418 -5.2978 29 1 4.3739 -3.0483 -6.7270 30 1 5.4715 -5.2355 -6.4540 31 1 4.6628 -6.8143 -4.7468 32 1 1.6715 -4.5379 0.9978 33 1 2.6061 -3.1750 1.8168 34 1 0.4421 -1.8951 2.1574 35 1 -0.4933 -3.2574 1.3385 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:55 Heat of formation + Delta-G solvation = 23.804736 kcal Electronic energy + Delta-G solvation = -17443.493723 eV Core-core repulsion = 14660.009843 eV Total energy + Delta-G solvation = -2783.483880 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39593 -38.75438 -37.39157 -36.07543 -33.90048 -32.22998 -31.58127 -28.01873 -27.09073 -24.72313 -23.60330 -22.89671 -22.13925 -20.88826 -18.29221 -17.77242 -16.97649 -16.55659 -16.35737 -15.90544 -15.67735 -15.08777 -14.99245 -14.67471 -14.17586 -14.13239 -13.45471 -13.18669 -13.02828 -12.85029 -12.64150 -12.48434 -12.41632 -12.32863 -12.19280 -12.02441 -11.65119 -11.32494 -10.73694 -10.37524 -9.98969 -9.81859 -9.61420 -9.08440 -8.02643 -6.08853 0.22392 0.35561 1.18816 1.43207 1.44408 1.53974 2.48651 2.68283 3.26968 3.37387 3.68616 3.81429 3.87523 4.11216 4.31158 4.40296 4.45246 4.50214 4.62296 4.64213 4.73365 4.79713 4.86262 4.97513 5.02037 5.05784 5.27031 5.30781 5.48073 5.56073 5.63024 5.73733 5.87947 5.92369 6.30023 6.49062 6.67508 6.93839 7.56107 9.06576 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.005787 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.779036 B = 4837.542842 C = 5748.902202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.023 3.977 3 Si 0.945 3.055 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.480 4.480 8 H 0.046 0.954 9 C 0.025 3.975 10 C 0.124 3.876 11 N -0.669 5.669 12 C 0.097 3.903 13 C -0.082 4.082 14 C -0.105 4.105 15 C -0.114 4.114 16 C -0.107 4.107 17 C -0.116 4.116 18 C -0.046 4.046 19 Cl -0.079 7.079 20 C -0.191 4.191 21 C -0.163 4.163 22 H 0.256 0.744 23 H 0.046 0.954 24 H 0.005 0.995 25 H 0.335 0.665 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.131 0.869 29 H 0.154 0.846 30 H 0.164 0.836 31 H 0.150 0.850 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.936 -11.389 -12.019 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.771 3.229 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.518 4.518 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.006 4.006 11 N -0.300 5.300 12 C -0.032 4.032 13 C -0.083 4.083 14 C -0.124 4.124 15 C -0.132 4.132 16 C -0.125 4.125 17 C -0.134 4.134 18 C -0.073 4.073 19 Cl -0.051 7.051 20 C -0.228 4.228 21 C -0.201 4.201 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.023 0.977 25 H 0.153 0.847 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.149 0.851 29 H 0.172 0.828 30 H 0.181 0.819 31 H 0.168 0.832 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.820 -10.713 -12.110 17.548 hybrid contribution -0.468 0.142 0.707 0.860 sum 6.352 -10.572 -11.402 16.797 Atomic orbital electron populations 1.70106 1.06867 1.26644 1.51476 1.25568 0.95494 1.01519 0.95033 0.85771 0.78818 0.80306 0.77966 1.20490 1.21145 1.19704 1.20505 0.92421 0.90013 1.48857 0.93578 1.18936 0.98170 0.93958 0.86463 1.21206 0.90836 0.95202 0.93306 1.60285 1.21246 1.45441 1.02991 1.20862 0.93701 0.98664 0.89973 1.19754 0.97947 0.93078 0.97538 1.21243 0.97499 0.98826 0.94794 1.21589 0.94867 0.97517 0.99201 1.21499 1.00296 0.93144 0.97566 1.21313 0.95016 1.01700 0.95416 1.21035 0.99179 0.91971 0.95131 1.98355 1.88812 1.61966 1.55929 1.22967 0.97356 0.96289 1.06205 1.22432 0.93290 1.01202 1.03163 0.93467 0.93536 0.97749 0.84708 0.90895 0.94427 0.85110 0.82793 0.81886 0.83231 0.89739 0.90564 0.92232 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.86 12.91 21.45 0.28 -52.59 16 2 C 0.02 1.27 5.39 84.66 0.46 1.73 16 3 Si 0.94 44.59 29.54 68.60 2.03 46.62 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.48 -26.75 8.74 25.60 0.22 -26.53 16 8 H 0.05 2.62 7.82 -2.91 -0.02 2.60 16 9 C 0.03 1.27 1.55 -52.93 -0.08 1.19 16 10 C 0.12 5.66 5.51 86.30 0.48 6.13 16 11 N -0.67 -27.08 6.37 -517.94 -3.30 -30.38 16 12 C 0.10 3.28 5.24 85.55 0.45 3.73 16 13 C -0.08 -2.41 5.40 -19.84 -0.11 -2.52 16 14 C -0.10 -2.71 9.67 22.26 0.22 -2.50 16 15 C -0.11 -2.23 10.05 22.27 0.22 -2.01 16 16 C -0.11 -1.86 10.05 22.27 0.22 -1.64 16 17 C -0.12 -2.41 9.83 22.29 0.22 -2.19 16 18 C -0.05 -1.22 6.31 22.32 0.14 -1.08 16 19 Cl -0.08 -2.12 26.76 -2.72 -0.07 -2.20 16 20 C -0.19 -8.35 9.96 30.62 0.30 -8.04 16 21 C -0.16 -7.81 9.41 30.62 0.29 -7.52 16 22 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 23 H 0.05 2.39 8.13 -2.38 -0.02 2.37 16 24 H 0.00 0.19 8.09 -2.39 -0.02 0.18 16 25 H 0.33 13.11 7.99 -89.69 -0.72 12.39 16 26 H 0.07 2.53 8.01 -2.38 -0.02 2.51 16 27 H 0.04 1.24 7.35 -2.39 -0.02 1.22 16 28 H 0.13 3.33 8.04 -2.91 -0.02 3.31 16 29 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 30 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.08 3.26 8.14 -2.38 -0.02 3.24 16 33 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -61.79 314.48 2.33 -59.46 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.36 Total: 20.32 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 3.03 Total: -41.24 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -3.02 Total: -82.97 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -0.07 Total: -2.20 kcal Total: -61.79 2.33 -59.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.268 kcal (2) G-P(sol) polarization free energy of solvation -61.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds