Wall clock time and date at job start Mon Mar 30 2020 00:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76192 * 103.00168 * 2 1 4 4 C 1.39042 * 120.18360 * 359.97438 * 3 2 1 5 5 C 1.37908 * 120.05865 * 180.02562 * 4 3 2 6 6 C 1.38649 * 120.43672 * 359.97438 * 5 4 3 7 7 C 1.37735 * 120.36949 * 359.97438 * 6 5 4 8 8 C 1.39751 * 119.92972 * 0.02562 * 7 6 5 9 9 C 1.47388 * 120.21027 * 179.97438 * 8 7 6 10 10 O 1.21617 * 119.99716 * 180.02562 * 9 8 7 11 11 N 1.34774 * 120.00277 * 0.02562 * 9 8 7 12 12 C 1.46497 * 119.99799 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47085 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.47232 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99992 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00024 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00266 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00018 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47041 * 89.99907 * 18 16 14 20 20 H 1.48503 * 109.46947 * 209.99896 * 18 16 14 21 21 H 1.48499 * 109.47019 * 329.99671 * 18 16 14 22 22 H 1.08994 * 109.46917 * 300.00240 * 1 2 3 23 23 H 1.09003 * 109.46268 * 60.00366 * 1 2 3 24 24 H 1.09002 * 109.47165 * 179.97438 * 1 2 3 25 25 H 1.07999 * 119.97199 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.78642 * 179.97438 * 5 4 3 27 27 H 1.08002 * 119.82160 * 179.97438 * 6 5 4 28 28 H 1.07998 * 120.03574 * 179.74573 * 7 6 5 29 29 H 0.96998 * 120.00395 * 0.02562 * 11 9 8 30 30 H 1.09001 * 109.47251 * 300.00154 * 12 11 9 31 31 H 1.08996 * 109.47522 * 60.00121 * 12 11 9 32 32 H 1.09001 * 109.46945 * 300.00027 * 13 12 11 33 33 H 1.08996 * 109.47098 * 59.99547 * 13 12 11 34 34 H 0.96995 * 120.00473 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7167 0.0000 4 6 1.1966 2.6683 -0.0005 5 6 1.5098 4.0113 -0.0011 6 6 2.8335 4.4239 -0.0005 7 6 3.8519 3.4965 0.0011 8 6 3.5520 2.1316 0.0016 9 6 4.6369 1.1339 0.0027 10 8 4.3716 -0.0529 0.0028 11 7 5.9230 1.5369 0.0038 12 6 7.0013 0.5452 0.0055 13 6 8.3532 1.2617 0.0070 14 6 9.4624 0.2416 0.0081 15 1 9.2267 -0.8125 0.0074 16 6 10.7781 0.6538 0.0091 17 7 11.7462 -0.2365 0.0106 18 14 11.1858 2.4768 0.0097 19 1 11.2928 2.9596 1.4099 20 1 12.4775 2.6954 -0.6894 21 1 10.1110 3.2246 -0.6910 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 0.1630 2.3554 -0.0014 26 1 0.7188 4.7467 -0.0019 27 1 3.0675 5.4782 -0.0014 28 1 4.8811 3.8239 -0.0027 29 1 6.1347 2.4835 0.0042 30 1 6.9200 -0.0785 0.8958 31 1 6.9218 -0.0795 -0.8841 32 1 8.4347 1.8856 -0.8830 33 1 8.4324 1.8861 0.8968 34 1 12.6718 0.0535 0.0116 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092213050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:01:49 Heat of formation + Delta-G solvation = -14.101238 kcal Electronic energy + Delta-G solvation = -16952.309942 eV Core-core repulsion = 14169.226041 eV Total energy + Delta-G solvation = -2783.083900 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.02692 -38.19862 -35.06972 -32.91309 -31.74040 -31.34465 -29.88880 -28.84806 -25.38057 -23.46742 -22.85495 -20.84978 -20.31934 -18.28005 -17.06823 -16.81521 -15.74939 -15.35659 -15.10342 -14.67586 -14.66822 -14.15969 -14.11817 -13.95551 -13.40566 -13.36964 -12.72187 -12.65821 -12.58812 -11.91985 -11.54456 -11.37928 -11.21415 -10.68098 -10.40674 -10.11730 -9.95198 -9.91710 -9.37119 -9.23836 -9.11176 -8.65060 -8.55166 -7.40305 -6.10755 -4.10940 0.68540 1.01997 1.50479 2.46138 2.93437 3.25262 3.32761 3.33933 3.53700 3.74316 4.37770 4.53201 4.64933 4.80366 4.93126 4.95141 5.08498 5.17372 5.22062 5.38273 5.53734 5.60299 5.89676 6.00969 6.13531 6.18645 6.20874 6.55356 6.56829 6.71886 7.12713 7.22707 7.66316 7.85379 8.42734 8.50704 8.93727 9.49217 11.02305 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.030328 B = 0.004211 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.020097 B = 6648.163285 C = 7545.435529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 S 0.005 5.995 3 C -0.047 4.047 4 C -0.147 4.147 5 C -0.078 4.078 6 C -0.138 4.138 7 C -0.066 4.066 8 C -0.122 4.122 9 C 0.543 3.457 10 O -0.517 6.517 11 N -0.718 5.718 12 C 0.130 3.870 13 C -0.022 4.022 14 C -0.523 4.523 15 H 0.076 0.924 16 C 0.069 3.931 17 N -0.898 5.898 18 Si 0.882 3.118 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.266 1.266 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.104 0.896 25 H 0.128 0.872 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.395 0.605 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.022 0.978 33 H 0.018 0.982 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.845 10.097 -0.047 24.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.371 4.371 2 S 0.251 5.749 3 C -0.162 4.162 4 C -0.172 4.172 5 C -0.098 4.098 6 C -0.160 4.160 7 C -0.086 4.086 8 C -0.132 4.132 9 C 0.330 3.670 10 O -0.396 6.396 11 N -0.369 5.369 12 C 0.008 3.992 13 C -0.060 4.060 14 C -0.561 4.561 15 H 0.094 0.906 16 C -0.133 4.133 17 N -0.537 5.537 18 Si 0.709 3.291 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.191 1.191 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.123 0.877 25 H 0.146 0.854 26 H 0.145 0.855 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.229 0.771 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.036 0.964 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.177 8.057 -0.051 23.595 hybrid contribution -0.361 2.651 0.019 2.675 sum -22.538 10.708 -0.032 24.952 Atomic orbital electron populations 1.24131 1.01570 1.06659 1.04767 1.87277 0.99290 0.99307 1.89040 1.22219 0.95087 0.98889 1.00027 1.21120 0.98142 0.93070 1.04843 1.21188 0.96748 0.95272 0.96606 1.21076 0.92519 0.99784 1.02587 1.21329 0.99949 0.91431 0.95917 1.19728 0.91973 0.94013 1.07524 1.18120 0.82993 0.88177 0.77746 1.90694 1.82018 1.16869 1.49988 1.46203 1.05709 1.11073 1.73880 1.21554 0.85199 0.90546 1.01866 1.19802 0.92145 0.97232 0.96836 1.20913 0.89267 0.94262 1.51653 0.90566 1.24999 0.96263 0.97626 0.94371 1.69902 0.99685 1.33655 1.50409 0.86757 0.77942 0.85906 0.78504 1.20210 1.21256 1.19091 0.90395 0.90401 0.87736 0.85384 0.85483 0.85245 0.84993 0.77069 0.91706 0.91675 0.95984 0.96415 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.78 9.15 101.05 0.93 -0.86 16 2 S 0.00 0.06 19.47 -107.50 -2.09 -2.03 16 3 C -0.05 -0.63 6.16 -38.46 -0.24 -0.87 16 4 C -0.15 -1.52 9.36 -39.40 -0.37 -1.89 16 5 C -0.08 -0.68 10.02 -39.55 -0.40 -1.08 16 6 C -0.14 -1.27 10.02 -39.61 -0.40 -1.66 16 7 C -0.07 -0.74 9.53 -39.20 -0.37 -1.12 16 8 C -0.12 -1.75 5.89 -104.78 -0.62 -2.37 16 9 C 0.54 9.51 7.75 -12.54 -0.10 9.41 16 10 O -0.52 -10.57 13.77 5.26 0.07 -10.50 16 11 N -0.72 -12.24 5.51 -61.40 -0.34 -12.58 16 12 C 0.13 2.68 5.61 -4.04 -0.02 2.66 16 13 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 14 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 15 H 0.08 2.32 7.99 -52.48 -0.42 1.90 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 18 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 22 H 0.08 0.60 7.75 -51.93 -0.40 0.19 16 23 H 0.08 0.60 7.75 -51.92 -0.40 0.19 16 24 H 0.10 0.80 8.14 -51.92 -0.42 0.37 16 25 H 0.13 1.04 5.90 -52.49 -0.31 0.73 16 26 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 27 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.13 1.24 6.40 -52.49 -0.34 0.90 16 29 H 0.39 5.58 6.50 -40.82 -0.27 5.32 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 33 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 299.62 15.07 4.52 4.52 Total: -1.00 -32.76 299.62 -8.05 -40.82 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.18 Total: 1.56 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -2.13 Total: -11.50 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.44 Total: -39.17 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.09 Total: -2.03 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.76 -8.05 -40.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092213050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.716 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds