Wall clock time and date at job start Mon Mar 30 2020 00:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76192 * 103.00168 * 2 1 4 4 C 1.39042 * 120.18360 * 359.97438 * 3 2 1 5 5 C 1.37908 * 120.05865 * 180.02562 * 4 3 2 6 6 C 1.38649 * 120.43672 * 359.97438 * 5 4 3 7 7 C 1.37735 * 120.36949 * 359.97438 * 6 5 4 8 8 C 1.39751 * 119.92972 * 0.02562 * 7 6 5 9 9 C 1.47388 * 120.21027 * 179.97438 * 8 7 6 10 10 O 1.21617 * 119.99716 * 180.02562 * 9 8 7 11 11 N 1.34774 * 120.00277 * 0.02562 * 9 8 7 12 12 C 1.46497 * 119.99799 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47085 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.47232 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99992 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00024 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00266 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00018 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47041 * 89.99907 * 18 16 14 20 20 H 1.48503 * 109.46947 * 209.99896 * 18 16 14 21 21 H 1.48499 * 109.47019 * 329.99671 * 18 16 14 22 22 H 1.08994 * 109.46917 * 300.00240 * 1 2 3 23 23 H 1.09003 * 109.46268 * 60.00366 * 1 2 3 24 24 H 1.09002 * 109.47165 * 179.97438 * 1 2 3 25 25 H 1.07999 * 119.97199 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.78642 * 179.97438 * 5 4 3 27 27 H 1.08002 * 119.82160 * 179.97438 * 6 5 4 28 28 H 1.07998 * 120.03574 * 179.74573 * 7 6 5 29 29 H 0.96998 * 120.00395 * 0.02562 * 11 9 8 30 30 H 1.09001 * 109.47251 * 300.00154 * 12 11 9 31 31 H 1.08996 * 109.47522 * 60.00121 * 12 11 9 32 32 H 1.09001 * 109.46945 * 300.00027 * 13 12 11 33 33 H 1.08996 * 109.47098 * 59.99547 * 13 12 11 34 34 H 0.96995 * 120.00473 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7167 0.0000 4 6 1.1966 2.6683 -0.0005 5 6 1.5098 4.0113 -0.0011 6 6 2.8335 4.4239 -0.0005 7 6 3.8519 3.4965 0.0011 8 6 3.5520 2.1316 0.0016 9 6 4.6369 1.1339 0.0027 10 8 4.3716 -0.0529 0.0028 11 7 5.9230 1.5369 0.0038 12 6 7.0013 0.5452 0.0055 13 6 8.3532 1.2617 0.0070 14 6 9.4624 0.2416 0.0081 15 1 9.2267 -0.8125 0.0074 16 6 10.7781 0.6538 0.0091 17 7 11.7462 -0.2365 0.0106 18 14 11.1858 2.4768 0.0097 19 1 11.2928 2.9596 1.4099 20 1 12.4775 2.6954 -0.6894 21 1 10.1110 3.2246 -0.6910 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 0.1630 2.3554 -0.0014 26 1 0.7188 4.7467 -0.0019 27 1 3.0675 5.4782 -0.0014 28 1 4.8811 3.8239 -0.0027 29 1 6.1347 2.4835 0.0042 30 1 6.9200 -0.0785 0.8958 31 1 6.9218 -0.0795 -0.8841 32 1 8.4347 1.8856 -0.8830 33 1 8.4324 1.8861 0.8968 34 1 12.6718 0.0535 0.0116 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092213050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:01:49 Heat of formation + Delta-G solvation = -36.120783 kcal Electronic energy + Delta-G solvation = -16953.264781 eV Core-core repulsion = 14169.226041 eV Total energy + Delta-G solvation = -2784.038739 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17838 -39.23763 -36.70526 -34.85706 -32.93937 -32.18559 -31.47510 -29.58480 -27.10475 -24.66034 -23.70425 -22.64345 -21.56905 -19.34433 -19.00327 -17.96422 -16.96699 -16.56692 -16.38876 -16.14380 -15.71910 -15.59756 -15.16526 -14.90018 -14.77162 -14.48624 -14.43842 -13.61733 -13.45127 -13.31098 -13.03131 -12.70356 -12.25463 -12.20377 -12.16573 -11.76122 -11.61196 -11.48348 -10.79123 -10.74357 -10.29086 -10.22669 -9.94524 -8.41123 -8.30120 -6.37853 -0.22659 0.24215 0.61395 1.39135 1.42224 1.53446 1.62770 1.85178 2.22104 2.37132 2.78086 3.04778 3.69171 3.77026 4.08627 4.27797 4.29995 4.32111 4.35093 4.40536 4.43260 4.58060 4.72683 4.84675 4.89396 5.08467 5.14271 5.29095 5.38234 5.39821 5.43669 5.62661 5.85141 6.21553 6.54675 6.70133 7.19659 7.26781 8.86801 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.030328 B = 0.004211 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.020097 B = 6648.163285 C = 7545.435529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 S -0.092 6.092 3 C -0.056 4.056 4 C -0.149 4.149 5 C -0.065 4.065 6 C -0.131 4.131 7 C -0.069 4.069 8 C -0.153 4.153 9 C 0.538 3.462 10 O -0.557 6.557 11 N -0.710 5.710 12 C 0.147 3.853 13 C -0.012 4.012 14 C -0.541 4.541 15 H 0.027 0.973 16 C 0.004 3.996 17 N -0.951 5.951 18 Si 0.960 3.040 19 H -0.264 1.264 20 H -0.286 1.286 21 H -0.236 1.236 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.114 0.886 25 H 0.151 0.849 26 H 0.168 0.832 27 H 0.166 0.834 28 H 0.148 0.852 29 H 0.411 0.589 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.193 14.753 -0.058 29.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.345 4.345 2 S 0.154 5.846 3 C -0.171 4.171 4 C -0.173 4.173 5 C -0.085 4.085 6 C -0.152 4.152 7 C -0.089 4.089 8 C -0.163 4.163 9 C 0.327 3.673 10 O -0.439 6.439 11 N -0.362 5.362 12 C 0.023 3.977 13 C -0.049 4.049 14 C -0.579 4.579 15 H 0.046 0.954 16 C -0.193 4.193 17 N -0.591 5.591 18 Si 0.782 3.218 19 H -0.189 1.189 20 H -0.212 1.212 21 H -0.158 1.158 22 H 0.112 0.888 23 H 0.112 0.888 24 H 0.133 0.867 25 H 0.168 0.832 26 H 0.185 0.815 27 H 0.183 0.817 28 H 0.165 0.835 29 H 0.249 0.751 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.556 12.745 -0.062 27.667 hybrid contribution 0.232 1.154 0.024 1.177 sum -24.325 13.899 -0.038 28.016 Atomic orbital electron populations 1.24066 0.96309 1.07859 1.06235 1.87473 1.05016 1.02387 1.89767 1.22266 0.95585 0.98056 1.01214 1.21468 0.98448 0.93333 1.04038 1.21714 0.97827 0.95179 0.93767 1.21534 0.92080 1.01080 1.00498 1.21580 1.01655 0.90235 0.95437 1.19566 0.91198 0.94495 1.11045 1.18744 0.83526 0.88540 0.76539 1.90695 1.82830 1.18880 1.51454 1.45917 1.04936 1.11145 1.74250 1.21047 0.85817 0.90852 0.99993 1.19647 0.91003 0.96149 0.98138 1.21243 0.91487 0.93455 1.51720 0.95422 1.26099 0.95779 1.03854 0.93575 1.70077 1.00347 1.36759 1.51903 0.85528 0.78370 0.78525 0.79402 1.18889 1.21182 1.15845 0.88822 0.88825 0.86724 0.83179 0.81498 0.81692 0.83462 0.75122 0.93767 0.93763 0.94379 0.94509 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 9.15 113.37 1.04 -1.78 16 2 S -0.09 -2.64 19.47 -56.49 -1.10 -3.74 16 3 C -0.06 -1.46 6.16 23.00 0.14 -1.32 16 4 C -0.15 -2.59 9.36 22.38 0.21 -2.38 16 5 C -0.06 -0.81 10.02 22.29 0.22 -0.59 16 6 C -0.13 -1.76 10.02 22.25 0.22 -1.54 16 7 C -0.07 -1.35 9.53 22.52 0.21 -1.14 16 8 C -0.15 -4.29 5.89 -19.97 -0.12 -4.41 16 9 C 0.54 19.38 7.75 86.65 0.67 20.05 16 10 O -0.56 -24.33 13.77 -4.09 -0.06 -24.38 16 11 N -0.71 -24.26 5.51 -466.41 -2.57 -26.83 16 12 C 0.15 6.27 5.61 86.38 0.48 6.75 16 13 C -0.01 -0.53 4.16 29.85 0.12 -0.40 16 14 C -0.54 -31.38 9.66 25.60 0.25 -31.13 16 15 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 16 C 0.00 0.23 5.47 84.65 0.46 0.70 16 17 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 18 Si 0.96 42.39 27.47 68.60 1.88 44.28 16 19 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 21 H -0.24 -9.19 6.54 99.48 0.65 -8.53 16 22 H 0.09 1.20 7.75 -2.39 -0.02 1.18 16 23 H 0.09 1.20 7.75 -2.39 -0.02 1.18 16 24 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.15 1.84 5.90 -2.91 -0.02 1.83 16 26 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 27 H 0.17 1.09 8.06 -2.91 -0.02 1.06 16 28 H 0.15 2.28 6.40 -2.91 -0.02 2.27 16 29 H 0.41 10.95 6.50 -92.71 -0.60 10.34 16 30 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.04 1.62 7.20 -2.39 -0.02 1.60 16 33 H 0.04 1.54 7.57 -2.39 -0.02 1.52 16 34 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -77.01 299.62 2.84 -74.17 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.45 Total: 13.24 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 3.92 Total: -17.19 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -2.27 Total: -86.37 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.06 Total: -24.38 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.28 kcal Atomic # 16 Polarization: -2.64 SS G_CDS: -1.10 Total: -3.74 kcal Total: -77.01 2.84 -74.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092213050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.049 kcal (2) G-P(sol) polarization free energy of solvation -77.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds