Wall clock time and date at job start Mon Mar 30 2020 00:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99662 * 2 1 4 4 H 1.48496 * 109.47677 * 270.00614 * 3 2 1 5 5 H 1.48503 * 109.46917 * 30.01006 * 3 2 1 6 6 H 1.48502 * 109.46945 * 150.00342 * 3 2 1 7 7 C 1.37879 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99739 * 359.97438 * 7 2 1 9 9 C 1.50691 * 119.99977 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47138 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.47361 * 179.97438 * 10 9 7 12 12 C 1.46933 * 111.00782 * 171.03057 * 11 10 9 13 13 C 1.52903 * 108.62445 * 52.06981 * 12 11 10 14 14 C 1.50718 * 109.88128 * 50.35974 * 13 12 11 15 15 C 1.38794 * 118.48665 * 163.32225 * 14 13 12 16 16 Cl 1.73603 * 119.83979 * 359.81834 * 15 14 13 17 17 C 1.38156 * 120.31978 * 179.82516 * 15 14 13 18 18 C 1.38240 * 119.81131 * 359.97438 * 17 15 14 19 19 C 1.38014 * 119.88539 * 0.08070 * 18 17 15 20 20 C 1.37808 * 121.67331 * 343.27851 * 14 13 12 21 21 C 1.46637 * 111.00376 * 293.95904 * 11 10 9 22 22 H 0.97002 * 120.00454 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47187 * 59.99877 * 9 7 2 24 24 H 1.09003 * 109.47582 * 300.00385 * 9 7 2 25 25 H 1.09002 * 109.47039 * 60.00581 * 10 9 7 26 26 H 1.08997 * 109.47729 * 300.00415 * 10 9 7 27 27 H 1.08997 * 109.50748 * 292.37356 * 12 11 10 28 28 H 1.08995 * 109.64468 * 171.85293 * 12 11 10 29 29 H 1.09002 * 109.39075 * 290.25846 * 13 12 11 30 30 H 1.08996 * 109.38611 * 170.46135 * 13 12 11 31 31 H 1.07996 * 120.08710 * 179.97438 * 17 15 14 32 32 H 1.08004 * 120.05223 * 180.02562 * 18 17 15 33 33 H 1.07999 * 119.79681 * 179.97438 * 19 18 17 34 34 H 1.09002 * 109.30301 * 168.82887 * 21 11 10 35 35 H 1.09001 * 109.12987 * 49.34819 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0467 -1.4000 5 1 1.4465 2.6526 0.7003 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 7 5.4906 -2.6364 -0.0022 12 6 6.0176 -3.9912 0.2118 13 6 5.3603 -4.9354 -0.7954 14 6 5.4700 -4.3603 -2.1842 15 6 5.2587 -5.2017 -3.2677 16 17 4.8828 -6.8755 -3.0012 17 6 5.3461 -4.7136 -4.5572 18 6 5.6451 -3.3806 -4.7687 19 6 5.8564 -2.5439 -3.6916 20 6 5.7711 -3.0323 -2.3958 21 6 6.0152 -2.0809 -1.2538 22 1 -0.4851 0.8400 0.0004 23 1 3.8752 -0.6803 0.8889 24 1 3.8746 -0.6798 -0.8911 25 1 3.6580 -3.1504 -0.8908 26 1 3.6586 -3.1502 0.8892 27 1 5.7838 -4.3168 1.2253 28 1 7.0974 -3.9920 0.0637 29 1 4.3087 -5.0634 -0.5387 30 1 5.8608 -5.9032 -0.7639 31 1 5.1814 -5.3717 -5.3975 32 1 5.7140 -2.9948 -5.7751 33 1 6.0902 -1.5028 -3.8585 34 1 7.0866 -1.9090 -1.1506 35 1 5.5167 -1.1340 -1.4610 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133838187.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:33 Heat of formation + Delta-G solvation = 14.816429 kcal Electronic energy + Delta-G solvation = -17953.242849 eV Core-core repulsion = 15169.369207 eV Total energy + Delta-G solvation = -2783.873642 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41571 -37.44142 -36.36865 -33.41642 -32.37941 -31.38960 -30.03401 -28.78452 -25.66199 -23.99413 -22.76679 -22.20388 -20.86387 -18.72251 -16.96170 -16.64733 -15.92224 -15.38590 -15.00163 -14.78710 -14.28201 -13.96421 -13.77611 -13.31472 -13.07864 -12.57803 -12.32727 -12.19720 -11.96686 -11.78837 -11.50755 -11.37547 -11.07632 -10.95403 -10.91582 -10.53008 -9.93364 -9.89142 -9.71826 -9.19802 -8.61775 -8.59591 -8.50140 -7.94328 -6.03249 -4.01236 1.16917 1.27359 2.13535 3.31341 3.39281 3.44563 3.60116 4.32534 4.46568 4.65830 4.77357 4.95803 5.02887 5.24608 5.30376 5.33688 5.39333 5.50112 5.68599 5.70930 5.87890 5.91683 5.97779 6.08450 6.22833 6.24774 6.34801 6.38199 6.52330 6.77576 6.82264 7.11421 7.27085 7.53370 7.60063 7.84333 8.54334 9.01075 9.59047 11.10201 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.022411 B = 0.005645 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.079586 B = 4958.558767 C = 5041.358519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.070 0.930 9 C -0.007 4.007 10 C 0.064 3.936 11 N -0.529 5.529 12 C 0.053 3.947 13 C -0.121 4.121 14 C -0.063 4.063 15 C -0.034 4.034 16 Cl -0.075 7.075 17 C -0.117 4.117 18 C -0.112 4.112 19 C -0.108 4.108 20 C -0.090 4.090 21 C 0.085 3.915 22 H 0.263 0.737 23 H 0.024 0.976 24 H 0.010 0.990 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.814 -9.313 -7.053 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.558 4.558 8 H 0.088 0.912 9 C -0.044 4.044 10 C -0.062 4.062 11 N -0.250 5.250 12 C -0.075 4.075 13 C -0.160 4.160 14 C -0.064 4.064 15 C -0.061 4.061 16 Cl -0.047 7.047 17 C -0.135 4.135 18 C -0.131 4.131 19 C -0.127 4.127 20 C -0.092 4.092 21 C -0.043 4.043 22 H 0.072 0.928 23 H 0.043 0.957 24 H 0.028 0.972 25 H 0.052 0.948 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.103 0.897 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.775 -9.037 -6.588 18.530 hybrid contribution -0.145 0.157 -0.900 0.925 sum 14.630 -8.880 -7.488 18.681 Atomic orbital electron populations 1.69917 1.06315 1.26866 1.51184 1.24993 0.94697 0.99121 0.94531 0.86790 0.80593 0.83592 0.78450 1.20409 1.21412 1.18684 1.21063 0.89397 0.94472 1.50867 0.91194 1.19576 0.96540 0.91724 0.96589 1.22215 0.83420 1.00440 1.00163 1.62699 1.10745 1.19820 1.31754 1.22184 0.99004 0.87847 0.98479 1.21205 1.03280 0.99882 0.91583 1.19392 0.99608 0.92629 0.94777 1.20877 1.05268 0.85380 0.94578 1.98343 1.92883 1.16492 1.96935 1.20930 1.01340 0.96256 0.95007 1.20999 0.99951 0.92844 0.99262 1.21208 0.99496 1.00166 0.91826 1.20489 0.98337 0.93832 0.96519 1.21290 1.00768 0.96984 0.85291 0.92757 0.95723 0.97187 0.94801 0.91371 0.89988 0.90992 0.89455 0.90116 0.85279 0.85276 0.85368 0.89677 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -14.89 9.66 -34.44 -0.33 -15.23 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.16 3.98 -27.89 -0.11 -0.27 16 10 C 0.06 1.29 3.90 -3.82 -0.01 1.28 16 11 N -0.53 -8.84 5.02 -236.38 -1.19 -10.03 16 12 C 0.05 0.73 6.01 -3.86 -0.02 0.71 16 13 C -0.12 -1.67 4.48 -27.92 -0.13 -1.80 16 14 C -0.06 -0.93 5.05 -104.56 -0.53 -1.46 16 15 C -0.03 -0.48 6.31 -39.41 -0.25 -0.73 16 16 Cl -0.08 -0.96 27.39 -51.86 -1.42 -2.38 16 17 C -0.12 -1.46 9.83 -39.61 -0.39 -1.85 16 18 C -0.11 -1.34 10.04 -39.66 -0.40 -1.74 16 19 C -0.11 -1.43 9.65 -39.48 -0.38 -1.81 16 20 C -0.09 -1.33 5.20 -104.63 -0.54 -1.88 16 21 C 0.09 1.29 5.43 -5.15 -0.03 1.26 16 22 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 23 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 24 H 0.01 0.24 5.77 -51.93 -0.30 -0.06 16 25 H 0.03 0.71 5.87 -51.93 -0.30 0.41 16 26 H 0.07 1.38 8.09 -51.93 -0.42 0.96 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 29 H 0.09 1.33 7.05 -51.93 -0.37 0.96 16 30 H 0.08 0.98 7.37 -51.93 -0.38 0.60 16 31 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.10 1.62 6.02 -51.93 -0.31 1.30 16 LS Contribution 291.78 15.07 4.40 4.40 Total: -1.00 -30.94 291.78 -9.91 -40.85 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -4.58 Total: -1.04 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -3.22 Total: -21.62 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.41 Total: -37.32 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.42 Total: -2.38 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.94 -9.91 -40.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133838187.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.665 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds