Wall clock time and date at job start Mon Mar 30 2020 00:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99662 * 2 1 4 4 H 1.48496 * 109.47677 * 270.00614 * 3 2 1 5 5 H 1.48503 * 109.46917 * 30.01006 * 3 2 1 6 6 H 1.48502 * 109.46945 * 150.00342 * 3 2 1 7 7 C 1.37879 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99739 * 359.97438 * 7 2 1 9 9 C 1.50691 * 119.99977 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47138 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.47361 * 179.97438 * 10 9 7 12 12 C 1.46933 * 111.00782 * 171.03057 * 11 10 9 13 13 C 1.52903 * 108.62445 * 52.06981 * 12 11 10 14 14 C 1.50718 * 109.88128 * 50.35974 * 13 12 11 15 15 C 1.38794 * 118.48665 * 163.32225 * 14 13 12 16 16 Cl 1.73603 * 119.83979 * 359.81834 * 15 14 13 17 17 C 1.38156 * 120.31978 * 179.82516 * 15 14 13 18 18 C 1.38240 * 119.81131 * 359.97438 * 17 15 14 19 19 C 1.38014 * 119.88539 * 0.08070 * 18 17 15 20 20 C 1.37808 * 121.67331 * 343.27851 * 14 13 12 21 21 C 1.46637 * 111.00376 * 293.95904 * 11 10 9 22 22 H 0.97002 * 120.00454 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47187 * 59.99877 * 9 7 2 24 24 H 1.09003 * 109.47582 * 300.00385 * 9 7 2 25 25 H 1.09002 * 109.47039 * 60.00581 * 10 9 7 26 26 H 1.08997 * 109.47729 * 300.00415 * 10 9 7 27 27 H 1.08997 * 109.50748 * 292.37356 * 12 11 10 28 28 H 1.08995 * 109.64468 * 171.85293 * 12 11 10 29 29 H 1.09002 * 109.39075 * 290.25846 * 13 12 11 30 30 H 1.08996 * 109.38611 * 170.46135 * 13 12 11 31 31 H 1.07996 * 120.08710 * 179.97438 * 17 15 14 32 32 H 1.08004 * 120.05223 * 180.02562 * 18 17 15 33 33 H 1.07999 * 119.79681 * 179.97438 * 19 18 17 34 34 H 1.09002 * 109.30301 * 168.82887 * 21 11 10 35 35 H 1.09001 * 109.12987 * 49.34819 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0467 -1.4000 5 1 1.4465 2.6526 0.7003 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 7 5.4906 -2.6364 -0.0022 12 6 6.0176 -3.9912 0.2118 13 6 5.3603 -4.9354 -0.7954 14 6 5.4700 -4.3603 -2.1842 15 6 5.2587 -5.2017 -3.2677 16 17 4.8828 -6.8755 -3.0012 17 6 5.3461 -4.7136 -4.5572 18 6 5.6451 -3.3806 -4.7687 19 6 5.8564 -2.5439 -3.6916 20 6 5.7711 -3.0323 -2.3958 21 6 6.0152 -2.0809 -1.2538 22 1 -0.4851 0.8400 0.0004 23 1 3.8752 -0.6803 0.8889 24 1 3.8746 -0.6798 -0.8911 25 1 3.6580 -3.1504 -0.8908 26 1 3.6586 -3.1502 0.8892 27 1 5.7838 -4.3168 1.2253 28 1 7.0974 -3.9920 0.0637 29 1 4.3087 -5.0634 -0.5387 30 1 5.8608 -5.9032 -0.7639 31 1 5.1814 -5.3717 -5.3975 32 1 5.7140 -2.9948 -5.7751 33 1 6.0902 -1.5028 -3.8585 34 1 7.0866 -1.9090 -1.1506 35 1 5.5167 -1.1340 -1.4610 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133838187.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:32 Heat of formation + Delta-G solvation = -3.945666 kcal Electronic energy + Delta-G solvation = -17954.056435 eV Core-core repulsion = 15169.369207 eV Total energy + Delta-G solvation = -2784.687228 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.51793 -38.60536 -37.38650 -35.34510 -33.74447 -32.76667 -31.51671 -29.92466 -27.32756 -25.27654 -24.03587 -23.25597 -22.51403 -20.02676 -18.95798 -17.79239 -17.05940 -16.56763 -16.49311 -15.95149 -15.81982 -15.52823 -14.95146 -14.63415 -14.38616 -14.33777 -13.58658 -13.39495 -13.30606 -13.07232 -12.83272 -12.80652 -12.41477 -12.19177 -12.07435 -11.83030 -11.69790 -11.60344 -11.51650 -11.31798 -10.74600 -9.63826 -9.60075 -9.27032 -8.28982 -6.33336 0.15907 0.26408 1.12378 1.36261 1.39485 1.52390 2.37457 2.59816 3.05227 3.06638 3.64707 3.72173 3.96768 4.02044 4.16190 4.25114 4.38368 4.40273 4.52760 4.58650 4.66715 4.72240 4.81327 4.90202 4.93606 5.01698 5.09993 5.24163 5.29476 5.38639 5.42767 5.53721 5.65373 5.84843 6.11507 6.17792 6.31228 6.74189 7.31196 8.87970 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.022411 B = 0.005645 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.079586 B = 4958.558767 C = 5041.358519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.006 3.994 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.532 4.532 8 H 0.027 0.973 9 C 0.001 3.999 10 C 0.082 3.918 11 N -0.534 5.534 12 C 0.055 3.945 13 C -0.116 4.116 14 C -0.084 4.084 15 C -0.050 4.050 16 Cl -0.072 7.072 17 C -0.120 4.120 18 C -0.110 4.110 19 C -0.117 4.117 20 C -0.109 4.109 21 C 0.085 3.915 22 H 0.266 0.734 23 H 0.023 0.977 24 H 0.019 0.981 25 H 0.018 0.982 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.150 0.850 32 H 0.160 0.840 33 H 0.147 0.853 34 H 0.111 0.889 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.224 -8.529 -8.028 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.191 4.191 3 Si 0.774 3.226 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.570 4.570 8 H 0.045 0.955 9 C -0.037 4.037 10 C -0.046 4.046 11 N -0.255 5.255 12 C -0.073 4.073 13 C -0.154 4.154 14 C -0.085 4.085 15 C -0.077 4.077 16 Cl -0.043 7.043 17 C -0.139 4.139 18 C -0.128 4.128 19 C -0.135 4.135 20 C -0.111 4.111 21 C -0.043 4.043 22 H 0.075 0.925 23 H 0.042 0.958 24 H 0.038 0.962 25 H 0.036 0.964 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.167 0.833 32 H 0.178 0.822 33 H 0.164 0.836 34 H 0.129 0.871 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.209 -8.277 -7.564 20.539 hybrid contribution -0.935 -0.196 -0.642 1.151 sum 16.274 -8.473 -8.206 20.099 Atomic orbital electron populations 1.70075 1.08381 1.28189 1.52636 1.26000 0.95585 1.03549 0.93959 0.85640 0.79634 0.77994 0.79318 1.18945 1.21015 1.16756 1.21390 0.92043 0.93002 1.50593 0.95500 1.19444 0.93247 0.94293 0.96682 1.21807 0.86113 0.97616 0.99018 1.62622 1.08003 1.21841 1.32993 1.22283 1.00061 0.86120 0.98817 1.21130 1.02050 1.00690 0.91523 1.19552 1.00532 0.93103 0.95272 1.21078 1.05762 0.85706 0.95134 1.98338 1.92888 1.16100 1.96979 1.21282 1.00484 0.97017 0.95082 1.21389 0.98481 0.92415 1.00481 1.21513 0.99144 1.01349 0.91521 1.20569 0.99530 0.93819 0.97183 1.21325 1.01958 0.96232 0.84770 0.92489 0.95832 0.96239 0.96353 0.92336 0.89288 0.88698 0.91675 0.88668 0.83262 0.82200 0.83569 0.87076 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.56 13.96 21.45 0.30 -60.26 16 2 C 0.01 0.34 5.47 84.65 0.46 0.80 16 3 Si 0.95 44.50 27.47 68.60 1.88 46.39 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.24 -10.63 6.54 99.48 0.65 -9.98 16 7 C -0.53 -31.31 9.66 25.60 0.25 -31.06 16 8 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 9 C 0.00 0.05 3.98 29.84 0.12 0.17 16 10 C 0.08 3.33 3.90 86.30 0.34 3.67 16 11 N -0.53 -17.12 5.02 -901.77 -4.53 -21.65 16 12 C 0.06 1.41 6.01 86.26 0.52 1.93 16 13 C -0.12 -3.12 4.48 29.82 0.13 -2.98 16 14 C -0.08 -2.39 5.05 -19.83 -0.10 -2.49 16 15 C -0.05 -1.34 6.31 22.38 0.14 -1.20 16 16 Cl -0.07 -1.77 27.39 -2.72 -0.07 -1.84 16 17 C -0.12 -2.76 9.83 22.25 0.22 -2.54 16 18 C -0.11 -2.33 10.04 22.22 0.22 -2.10 16 19 C -0.12 -2.81 9.65 22.34 0.22 -2.60 16 20 C -0.11 -3.06 5.20 -19.87 -0.10 -3.17 16 21 C 0.09 2.42 5.43 85.58 0.46 2.88 16 22 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 23 H 0.02 1.12 7.20 -2.38 -0.02 1.11 16 24 H 0.02 0.89 5.77 -2.39 -0.01 0.88 16 25 H 0.02 0.79 5.87 -2.39 -0.01 0.78 16 26 H 0.06 2.44 8.09 -2.39 -0.02 2.42 16 27 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.09 2.04 8.04 -2.39 -0.02 2.02 16 29 H 0.06 2.03 7.05 -2.39 -0.02 2.01 16 30 H 0.10 2.22 7.37 -2.39 -0.02 2.20 16 31 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 32 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 34 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.08 2.61 6.02 -2.39 -0.01 2.60 16 Total: -1.00 -67.71 291.78 1.49 -66.22 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 1.03 Total: 9.84 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 2.88 Total: -38.69 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -4.23 Total: -81.91 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.39 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.07 Total: -1.84 kcal Total: -67.71 1.49 -66.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133838187.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.278 kcal (2) G-P(sol) polarization free energy of solvation -67.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds