Wall clock time and date at job start Mon Mar 30 2020 00:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33644 * 126.03935 * 2 1 4 4 N 1.31782 * 114.50118 * 180.02562 * 3 2 1 5 5 C 1.29022 * 117.12615 * 359.97438 * 4 3 2 6 6 C 1.50699 * 124.91665 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47722 * 89.99698 * 6 5 4 8 8 C 1.46896 * 111.00335 * 169.99939 * 7 6 5 9 9 C 1.50689 * 109.47192 * 284.31402 * 8 7 6 10 10 H 1.08004 * 120.00581 * 4.66534 * 9 8 7 11 11 C 1.37881 * 120.00292 * 184.66422 * 9 8 7 12 12 N 1.31521 * 119.99746 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00380 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46821 * 60.00323 * 13 11 9 15 15 H 1.48499 * 109.47188 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47257 * 300.00126 * 13 11 9 17 17 C 1.46903 * 110.99870 * 293.95572 * 7 6 5 18 18 C 1.53001 * 109.47100 * 163.99767 * 17 7 6 19 19 C 1.47204 * 109.47074 * 179.39917 * 18 17 7 20 20 N 7.06287 * 131.27648 * 64.40147 * 2 1 3 21 21 S 1.70978 * 110.16890 * 359.97438 * 5 4 3 22 22 H 1.08995 * 109.47293 * 90.02743 * 1 2 3 23 23 H 1.08996 * 109.46757 * 210.02607 * 1 2 3 24 24 H 1.09004 * 109.46950 * 330.02008 * 1 2 3 25 25 H 1.08006 * 122.74645 * 359.72908 * 3 2 1 26 26 H 1.08996 * 109.47344 * 209.99949 * 6 5 4 27 27 H 1.09007 * 109.47183 * 329.99320 * 6 5 4 28 28 H 1.09003 * 109.46721 * 44.31757 * 8 7 6 29 29 H 1.09002 * 109.47250 * 164.31023 * 8 7 6 30 30 H 0.96994 * 119.99894 * 180.02562 * 12 11 9 31 31 H 1.08994 * 109.47499 * 284.00323 * 17 7 6 32 32 H 1.09000 * 109.47135 * 44.00184 * 17 7 6 33 33 H 1.09000 * 109.47493 * 299.40120 * 18 17 7 34 34 H 1.08996 * 109.47053 * 59.40451 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8171 -0.0005 5 6 3.9311 -0.4257 -0.0005 6 6 5.3532 -0.9245 -0.0005 7 7 5.8154 -1.0865 1.3844 8 6 7.1037 -1.7907 1.4305 9 6 6.8828 -3.2594 1.1757 10 1 5.8971 -3.6214 0.9229 11 6 7.9389 -4.1412 1.2651 12 7 9.1392 -3.7006 1.5734 13 14 7.6649 -5.9619 0.9499 14 1 7.1535 -6.1536 -0.4311 15 1 8.9491 -6.6905 1.1082 16 1 6.6741 -6.4890 1.9223 17 6 5.9005 0.2120 2.0663 18 6 5.9899 -0.0104 3.5774 19 6 6.0896 1.2901 4.2597 20 7 6.1663 2.2934 4.7870 21 16 2.5436 -1.4248 0.0010 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3633 0.8902 0.5135 25 1 1.9024 2.0875 -0.0043 26 1 5.4015 -1.8846 -0.5142 27 1 5.9906 -0.2050 -0.5145 28 1 7.7670 -1.3850 0.6666 29 1 7.5563 -1.6565 2.4130 30 1 9.8822 -4.3208 1.6359 31 1 6.7879 0.7445 1.7243 32 1 5.0125 0.8013 1.8377 33 1 5.0975 -0.5335 3.9211 34 1 6.8721 -0.6087 3.8050 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180723103.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:15 Heat of formation + Delta-G solvation = 52.397633 kcal Electronic energy + Delta-G solvation = -17227.164012 eV Core-core repulsion = 14479.256470 eV Total energy + Delta-G solvation = -2747.907542 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70786 -38.84255 -37.45681 -34.70986 -33.75200 -32.41014 -30.17129 -28.13525 -26.27107 -24.83575 -24.32191 -21.92166 -20.16917 -18.91361 -18.53869 -18.35026 -16.94792 -16.24725 -16.15478 -15.82894 -15.65243 -15.22728 -14.90055 -14.41087 -14.21605 -13.87869 -13.77457 -13.58506 -13.53589 -13.28568 -13.05370 -12.93341 -12.57448 -12.47761 -12.34625 -12.03882 -11.91962 -11.57806 -11.25689 -10.53894 -10.44150 -10.05486 -9.63261 -9.10682 -8.09445 -6.17251 -0.18132 0.50907 0.95636 1.51732 1.52681 1.59843 1.68178 1.76161 1.92347 2.49318 2.88006 3.20617 3.28140 3.68371 4.08397 4.13045 4.16258 4.22371 4.37602 4.53455 4.61764 4.74032 4.79948 4.91329 4.97791 5.05492 5.12193 5.25575 5.31698 5.41097 5.75795 6.12125 6.25742 6.51578 6.57372 6.88104 6.96905 7.51770 9.00489 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.006614 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.693622 B = 4232.651082 C = 5832.877935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.225 4.225 3 C 0.011 3.989 4 N -0.497 5.497 5 C 0.043 3.957 6 C 0.139 3.861 7 N -0.524 5.524 8 C 0.202 3.798 9 C -0.514 4.514 10 H 0.067 0.933 11 C 0.009 3.991 12 N -0.932 5.932 13 Si 0.957 3.043 14 H -0.270 1.270 15 H -0.291 1.291 16 H -0.268 1.268 17 C 0.060 3.940 18 C -0.015 4.015 19 C 0.243 3.757 20 N -0.491 5.491 21 S 0.155 5.845 22 H 0.088 0.912 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.190 0.810 26 H 0.096 0.904 27 H 0.048 0.952 28 H -0.031 1.031 29 H 0.032 0.968 30 H 0.262 0.738 31 H 0.027 0.973 32 H 0.083 0.917 33 H 0.133 0.867 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.221 3.834 -3.489 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.347 4.347 3 C -0.140 4.140 4 N -0.212 5.212 5 C -0.234 4.234 6 C 0.009 3.991 7 N -0.249 5.249 8 C 0.077 3.923 9 C -0.553 4.553 10 H 0.085 0.915 11 C -0.190 4.190 12 N -0.573 5.573 13 Si 0.783 3.217 14 H -0.195 1.195 15 H -0.217 1.217 16 H -0.193 1.193 17 C -0.069 4.069 18 C -0.055 4.055 19 C -0.074 4.074 20 N -0.169 5.169 21 S 0.409 5.591 22 H 0.107 0.893 23 H 0.096 0.904 24 H 0.112 0.888 25 H 0.207 0.793 26 H 0.114 0.886 27 H 0.066 0.934 28 H -0.013 1.013 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.101 0.899 33 H 0.151 0.849 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.980 4.302 -2.427 16.726 hybrid contribution 0.907 0.171 -0.752 1.191 sum -15.072 4.474 -3.179 16.040 Atomic orbital electron populations 1.20349 0.84404 1.04446 1.03956 1.26484 1.03090 0.94647 1.10459 1.21983 0.86497 1.01203 1.04288 1.66297 1.19195 1.19209 1.16534 1.26754 1.01179 0.91507 1.03991 1.20435 0.86909 1.00577 0.91222 1.61996 1.31391 1.17897 1.13585 1.19578 0.83977 0.92863 0.95911 1.21399 0.95072 0.92550 1.46252 0.91507 1.25727 0.94840 1.03090 0.95308 1.70052 1.00785 1.36480 1.49983 0.85621 0.77095 0.79987 0.79045 1.19479 1.21729 1.19296 1.21944 1.01275 0.91425 0.92299 1.19310 1.07385 0.85767 0.93077 1.29440 0.91180 0.94496 0.92284 1.81164 1.11287 1.12997 1.11487 1.84018 0.97493 1.10953 1.66607 0.89307 0.90392 0.88774 0.79312 0.88585 0.93384 1.01301 0.95006 0.92934 0.95424 0.89883 0.84926 0.86771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.42 71.23 0.74 -0.18 16 2 C -0.23 -4.76 6.60 24.64 0.16 -4.59 16 3 C 0.01 0.26 11.25 83.66 0.94 1.20 16 4 N -0.50 -15.11 9.36 -191.44 -1.79 -16.91 16 5 C 0.04 1.32 6.10 88.52 0.54 1.86 16 6 C 0.14 4.90 5.37 85.56 0.46 5.36 16 7 N -0.52 -19.58 4.37 -905.39 -3.96 -23.54 16 8 C 0.20 9.33 4.59 85.55 0.39 9.72 16 9 C -0.51 -25.83 8.61 25.60 0.22 -25.61 16 10 H 0.07 3.26 7.66 -2.91 -0.02 3.23 16 11 C 0.01 0.45 5.46 84.65 0.46 0.91 16 12 N -0.93 -52.15 13.29 21.45 0.28 -51.87 16 13 Si 0.96 41.17 29.54 68.60 2.03 43.19 16 14 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 15 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 17 C 0.06 1.98 4.78 86.30 0.41 2.40 16 18 C -0.02 -0.43 5.78 28.79 0.17 -0.27 16 19 C 0.24 7.46 15.43 89.44 1.38 8.84 16 20 N -0.49 -17.17 18.54 20.01 0.37 -16.80 16 21 S 0.16 3.98 23.18 -56.49 -1.31 2.67 16 22 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.19 3.51 8.06 -2.91 -0.02 3.49 16 26 H 0.10 3.51 7.32 -2.39 -0.02 3.49 16 27 H 0.05 1.73 8.12 -2.38 -0.02 1.71 16 28 H -0.03 -1.57 8.00 -2.39 -0.02 -1.59 16 29 H 0.03 1.53 6.24 -2.39 -0.01 1.52 16 30 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 31 H 0.03 0.95 8.05 -2.39 -0.02 0.93 16 32 H 0.08 2.70 6.03 -2.39 -0.01 2.69 16 33 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 34 H 0.11 3.42 6.52 -2.39 -0.02 3.40 16 Total: -1.00 -60.92 310.86 2.61 -58.31 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.11 Total: 5.30 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 5.88 Total: -0.36 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -5.09 Total: -109.11 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.31 Total: 2.67 kcal Total: -60.92 2.61 -58.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180723103.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.707 kcal (2) G-P(sol) polarization free energy of solvation -60.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds