Wall clock time and date at job start Mon Mar 30 2020 00:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46594 * 181.23157 * 3 2 1 5 5 N 1.46501 * 109.46858 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99790 * 88.46817 * 5 4 3 7 7 C 1.50701 * 109.47369 * 90.16046 * 6 5 4 8 8 H 1.08004 * 119.99755 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00071 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00118 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00161 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46792 * 90.00354 * 11 9 7 13 13 H 1.48497 * 109.47287 * 210.00510 * 11 9 7 14 14 H 1.48497 * 109.47061 * 330.00651 * 11 9 7 15 15 C 1.34782 * 120.00055 * 268.46093 * 5 4 3 16 16 O 1.21689 * 119.99649 * 6.18635 * 15 5 4 17 17 C 1.46658 * 119.99719 * 186.18390 * 15 5 4 18 18 C 1.37925 * 126.21062 * 187.51192 * 17 15 5 19 19 C 1.39929 * 107.10578 * 179.90492 * 18 17 15 20 20 F 1.35102 * 126.07552 * 180.13447 * 19 18 17 21 21 C 1.35563 * 107.84352 * 0.36090 * 19 18 17 22 22 N 1.35745 * 108.83547 * 359.77542 * 21 19 18 23 23 H 0.97004 * 125.68121 * 180.02562 * 22 21 19 24 24 H 1.09005 * 109.47208 * 61.24008 * 3 2 1 25 25 H 1.09000 * 109.47690 * 301.23044 * 3 2 1 26 26 H 1.08998 * 109.47013 * 60.00455 * 4 3 2 27 27 H 1.08999 * 109.47523 * 300.00404 * 4 3 2 28 28 H 1.09000 * 109.46910 * 210.16374 * 6 5 4 29 29 H 1.09002 * 109.47020 * 330.16257 * 6 5 4 30 30 H 0.97001 * 119.99898 * 180.02562 * 10 9 7 31 31 H 1.07996 * 126.45098 * 0.02562 * 18 17 15 32 32 H 1.08001 * 125.58166 * 179.81314 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1172 1.4432 0.0310 5 7 4.5822 1.4439 0.0316 6 6 5.3152 1.4374 -1.2368 7 6 5.5693 2.8559 -1.6775 8 1 5.2201 3.6800 -1.0729 9 6 6.2485 3.1018 -2.8518 10 7 6.6742 2.0984 -3.5878 11 14 6.5629 4.8602 -3.3984 12 1 7.8581 5.3273 -2.8422 13 1 6.6120 4.9163 -4.8815 14 1 5.4685 5.7348 -2.9060 15 6 5.2556 1.4506 1.1991 16 8 4.6521 1.3426 2.2502 17 6 6.7158 1.5882 1.2026 18 6 7.5430 1.4666 2.2995 19 6 8.8530 1.6699 1.8516 20 9 9.9687 1.6334 2.6127 21 6 8.8031 1.9149 0.5193 22 7 7.5087 1.8679 0.1131 23 1 7.1949 2.0077 -0.7940 24 1 2.9715 -0.4936 -0.9009 25 1 2.9716 -0.5320 0.8787 26 1 2.7537 1.9375 0.9319 27 1 2.7536 1.9759 -0.8477 28 1 6.2665 0.9222 -1.1040 29 1 4.7254 0.9217 -1.9946 30 1 7.1523 2.2714 -4.4138 31 1 7.2375 1.2526 3.3130 32 1 9.6540 2.1143 -0.1153 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339097623.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:16 Heat of formation + Delta-G solvation = -0.510213 kcal Electronic energy + Delta-G solvation = -19672.441083 eV Core-core repulsion = 16356.026108 eV Total energy + Delta-G solvation = -3316.414974 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.097 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.08278 -40.92252 -38.74295 -36.70167 -35.58909 -33.39377 -31.57517 -30.11496 -28.59214 -27.65738 -24.45076 -23.57348 -21.38810 -20.25571 -19.53784 -17.69384 -17.25556 -16.85057 -16.13506 -15.58697 -15.23304 -14.94025 -14.83785 -14.50802 -14.32132 -14.08441 -13.53145 -13.16097 -12.97325 -12.81958 -12.61517 -12.40645 -12.28123 -11.78306 -11.54714 -11.33050 -11.21306 -10.98704 -10.79498 -10.51143 -10.18673 -9.59445 -9.04483 -8.43564 -8.17939 -7.75934 -6.66021 -4.80806 1.91777 2.79431 2.89543 2.89785 2.97935 3.08130 3.11306 3.44025 3.75314 3.88652 3.99679 4.28173 4.65749 4.88346 5.16481 5.23925 5.40098 5.50738 5.59376 5.82989 5.90447 6.09265 6.14465 6.20720 6.34621 6.65750 6.96744 7.15042 7.30901 7.37765 7.48207 7.65483 7.88361 8.06416 8.34740 8.63864 8.91928 10.36458 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.011800 B = 0.008570 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.315742 B = 3266.563626 C = 5249.919738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.221 3.779 3 C -0.046 4.046 4 C 0.129 3.871 5 N -0.596 5.596 6 C 0.214 3.786 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.067 3.933 10 N -0.878 5.878 11 Si 0.900 3.100 12 H -0.274 1.274 13 H -0.280 1.280 14 H -0.268 1.268 15 C 0.591 3.409 16 O -0.552 6.552 17 C -0.016 4.016 18 C -0.153 4.153 19 C -0.016 4.016 20 F -0.138 7.138 21 C -0.012 4.012 22 N -0.498 5.498 23 H 0.456 0.544 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.275 0.725 31 H 0.150 0.850 32 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 -1.894 2.844 4.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.097 4.097 3 C -0.088 4.088 4 C 0.004 3.996 5 N -0.326 5.326 6 C 0.094 3.906 7 C -0.605 4.605 8 H 0.091 0.909 9 C -0.140 4.140 10 N -0.514 5.514 11 Si 0.726 3.274 12 H -0.199 1.199 13 H -0.205 1.205 14 H -0.193 1.193 15 C 0.381 3.619 16 O -0.431 6.431 17 C -0.134 4.134 18 C -0.180 4.180 19 C -0.042 4.042 20 F -0.117 7.117 21 C -0.153 4.153 22 N -0.107 5.107 23 H 0.316 0.684 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.168 0.832 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.294 -1.975 2.956 3.567 hybrid contribution 0.931 0.989 -0.842 1.598 sum 1.225 -0.986 2.114 2.635 Atomic orbital electron populations 1.81184 1.13057 1.08745 1.09623 1.29075 0.95087 0.92996 0.92567 1.19784 0.81392 1.01415 1.06193 1.21158 0.80604 0.93491 1.04369 1.48011 1.05705 1.71469 1.07463 1.19884 0.92728 0.97768 0.80237 1.21660 1.38545 0.92547 1.07745 0.90882 1.25098 0.94857 0.98470 0.95526 1.69915 1.35992 1.31111 1.14393 0.86415 0.79335 0.83415 0.78249 1.19923 1.20537 1.19250 1.17028 0.84930 0.76347 0.83627 1.90764 1.68690 1.52160 1.31458 1.20117 0.91398 1.14270 0.87582 1.21072 0.90187 1.08010 0.98767 1.16504 0.82946 1.15553 0.89182 1.91378 1.49681 1.95603 1.75032 1.21855 0.89017 1.09425 0.94957 1.44130 1.04879 1.48517 1.13203 0.68397 0.86999 0.87017 0.89634 0.89075 0.94031 0.92976 0.91511 0.83198 0.81025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.21 18.54 42.15 0.78 -6.43 16 2 C 0.22 3.01 15.43 -20.76 -0.32 2.69 16 3 C -0.05 -0.56 6.03 -29.52 -0.18 -0.74 16 4 C 0.13 1.89 5.34 -4.04 -0.02 1.87 16 5 N -0.60 -10.46 2.46 -176.61 -0.43 -10.89 16 6 C 0.21 4.15 4.67 -5.19 -0.02 4.13 16 7 C -0.57 -12.19 7.43 -34.44 -0.26 -12.45 16 8 H 0.07 1.65 7.81 -52.48 -0.41 1.24 16 9 C 0.07 1.48 5.10 -17.82 -0.09 1.39 16 10 N -0.88 -20.10 13.29 55.43 0.74 -19.36 16 11 Si 0.90 17.89 29.54 -169.99 -5.02 12.87 16 12 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 13 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 14 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 15 C 0.59 11.24 7.62 -12.86 -0.10 11.14 16 16 O -0.55 -11.17 16.51 5.20 0.09 -11.09 16 17 C -0.02 -0.31 6.62 -81.98 -0.54 -0.85 16 18 C -0.15 -2.73 10.66 -39.06 -0.42 -3.14 16 19 C -0.02 -0.28 7.98 -39.90 -0.32 -0.60 16 20 F -0.14 -2.32 17.32 2.25 0.04 -2.28 16 21 C -0.01 -0.20 11.90 -16.78 -0.20 -0.40 16 22 N -0.50 -9.22 4.86 -9.32 -0.05 -9.27 16 23 H 0.46 8.97 3.37 -40.82 -0.14 8.83 16 24 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 25 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.09 1.29 7.47 -51.93 -0.39 0.90 16 27 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 28 H 0.04 0.84 5.14 -51.93 -0.27 0.58 16 29 H 0.05 1.02 8.07 -51.93 -0.42 0.60 16 30 H 0.28 6.05 8.31 -40.82 -0.34 5.72 16 31 H 0.15 2.46 8.06 -52.49 -0.42 2.04 16 32 H 0.17 2.37 8.06 -52.49 -0.42 1.94 16 LS Contribution 293.28 15.07 4.42 4.42 Total: -1.00 -25.10 293.28 -4.77 -29.87 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -2.87 Total: 9.12 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -2.47 Total: 3.04 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 1.04 Total: -45.95 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.02 Total: 12.87 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -25.10 -4.77 -29.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339097623.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.357 kcal (2) G-P(sol) polarization free energy of solvation -25.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds