Wall clock time and date at job start Mon Mar 30 2020 00:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46594 * 181.23157 * 3 2 1 5 5 N 1.46501 * 109.46858 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99790 * 88.46817 * 5 4 3 7 7 C 1.50701 * 109.47369 * 90.16046 * 6 5 4 8 8 H 1.08004 * 119.99755 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00071 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00118 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00161 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46792 * 90.00354 * 11 9 7 13 13 H 1.48497 * 109.47287 * 210.00510 * 11 9 7 14 14 H 1.48497 * 109.47061 * 330.00651 * 11 9 7 15 15 C 1.34782 * 120.00055 * 268.46093 * 5 4 3 16 16 O 1.21689 * 119.99649 * 6.18635 * 15 5 4 17 17 C 1.46658 * 119.99719 * 186.18390 * 15 5 4 18 18 C 1.37925 * 126.21062 * 187.51192 * 17 15 5 19 19 C 1.39929 * 107.10578 * 179.90492 * 18 17 15 20 20 F 1.35102 * 126.07552 * 180.13447 * 19 18 17 21 21 C 1.35563 * 107.84352 * 0.36090 * 19 18 17 22 22 N 1.35745 * 108.83547 * 359.77542 * 21 19 18 23 23 H 0.97004 * 125.68121 * 180.02562 * 22 21 19 24 24 H 1.09005 * 109.47208 * 61.24008 * 3 2 1 25 25 H 1.09000 * 109.47690 * 301.23044 * 3 2 1 26 26 H 1.08998 * 109.47013 * 60.00455 * 4 3 2 27 27 H 1.08999 * 109.47523 * 300.00404 * 4 3 2 28 28 H 1.09000 * 109.46910 * 210.16374 * 6 5 4 29 29 H 1.09002 * 109.47020 * 330.16257 * 6 5 4 30 30 H 0.97001 * 119.99898 * 180.02562 * 10 9 7 31 31 H 1.07996 * 126.45098 * 0.02562 * 18 17 15 32 32 H 1.08001 * 125.58166 * 179.81314 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1172 1.4432 0.0310 5 7 4.5822 1.4439 0.0316 6 6 5.3152 1.4374 -1.2368 7 6 5.5693 2.8559 -1.6775 8 1 5.2201 3.6800 -1.0729 9 6 6.2485 3.1018 -2.8518 10 7 6.6742 2.0984 -3.5878 11 14 6.5629 4.8602 -3.3984 12 1 7.8581 5.3273 -2.8422 13 1 6.6120 4.9163 -4.8815 14 1 5.4685 5.7348 -2.9060 15 6 5.2556 1.4506 1.1991 16 8 4.6521 1.3426 2.2502 17 6 6.7158 1.5882 1.2026 18 6 7.5430 1.4666 2.2995 19 6 8.8530 1.6699 1.8516 20 9 9.9687 1.6334 2.6127 21 6 8.8031 1.9149 0.5193 22 7 7.5087 1.8679 0.1131 23 1 7.1949 2.0077 -0.7940 24 1 2.9715 -0.4936 -0.9009 25 1 2.9716 -0.5320 0.8787 26 1 2.7537 1.9375 0.9319 27 1 2.7536 1.9759 -0.8477 28 1 6.2665 0.9222 -1.1040 29 1 4.7254 0.9217 -1.9946 30 1 7.1523 2.2714 -4.4138 31 1 7.2375 1.2526 3.3130 32 1 9.6540 2.1143 -0.1153 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339097623.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:16 Heat of formation + Delta-G solvation = -12.762937 kcal Electronic energy + Delta-G solvation = -19672.972401 eV Core-core repulsion = 16356.026108 eV Total energy + Delta-G solvation = -3316.946292 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.097 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.42513 -42.32955 -40.15703 -37.93111 -37.03784 -34.95339 -32.89524 -31.51070 -29.95407 -29.22449 -25.71778 -25.18029 -22.75849 -21.62184 -20.94737 -19.07005 -18.59967 -18.35640 -17.53944 -17.00057 -16.61480 -16.42364 -16.15843 -15.86919 -15.65062 -15.41156 -14.80458 -14.53754 -14.40226 -14.34423 -14.05399 -13.64355 -13.53098 -13.23709 -12.96776 -12.76530 -12.65565 -12.46407 -12.22330 -11.85058 -11.78302 -11.09880 -10.71652 -9.86725 -9.62445 -9.13630 -8.34128 -6.52279 0.49396 1.39617 1.47645 1.52796 1.53236 1.64895 1.79221 2.08778 2.32512 2.35057 2.50273 2.96773 3.14422 3.49171 3.92449 4.11415 4.15359 4.23922 4.43376 4.54525 4.63012 4.71521 4.88037 4.99297 5.00923 5.11798 5.52873 5.61155 5.76104 5.84527 6.00581 6.37791 6.55496 6.61458 6.67970 7.15231 7.24882 8.67266 Molecular weight = 265.10amu Principal moments of inertia in cm(-1) A = 0.011800 B = 0.008570 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.315742 B = 3266.563626 C = 5249.919738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.246 3.754 3 C -0.032 4.032 4 C 0.125 3.875 5 N -0.592 5.592 6 C 0.224 3.776 7 C -0.567 4.567 8 H 0.059 0.941 9 C 0.041 3.959 10 N -0.897 5.897 11 Si 0.942 3.058 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.275 1.275 15 C 0.589 3.411 16 O -0.569 6.569 17 C -0.040 4.040 18 C -0.152 4.152 19 C -0.023 4.023 20 F -0.135 7.135 21 C -0.003 4.003 22 N -0.507 5.507 23 H 0.452 0.548 24 H 0.133 0.867 25 H 0.122 0.878 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.039 0.961 29 H 0.052 0.948 30 H 0.276 0.724 31 H 0.159 0.841 32 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 -1.935 2.669 4.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.072 4.072 3 C -0.073 4.073 4 C 0.000 4.000 5 N -0.321 5.321 6 C 0.103 3.897 7 C -0.605 4.605 8 H 0.078 0.922 9 C -0.164 4.164 10 N -0.534 5.534 11 Si 0.768 3.232 12 H -0.197 1.197 13 H -0.206 1.206 14 H -0.200 1.200 15 C 0.379 3.621 16 O -0.450 6.450 17 C -0.156 4.156 18 C -0.179 4.179 19 C -0.048 4.048 20 F -0.114 7.114 21 C -0.144 4.144 22 N -0.115 5.115 23 H 0.310 0.690 24 H 0.150 0.850 25 H 0.140 0.860 26 H 0.099 0.901 27 H 0.113 0.887 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.177 0.823 32 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.936 -2.019 2.788 3.567 hybrid contribution 0.779 1.019 -0.759 1.490 sum 1.715 -1.000 2.029 2.839 Atomic orbital electron populations 1.81215 1.14322 1.10032 1.11191 1.29190 0.95048 0.91730 0.91197 1.19720 0.80126 0.99804 1.07671 1.21278 0.79049 0.95282 1.04359 1.47952 1.06679 1.70952 1.06526 1.19680 0.92766 0.96534 0.80712 1.21710 1.38182 0.93149 1.07480 0.92226 1.25493 0.94877 1.00355 0.95672 1.69953 1.36703 1.32029 1.14721 0.85769 0.78895 0.80855 0.77697 1.19656 1.20643 1.20030 1.17112 0.85150 0.76213 0.83671 1.90747 1.69078 1.53266 1.31912 1.20218 0.91584 1.15730 0.88078 1.21277 0.90442 1.07185 0.99043 1.16534 0.82869 1.15942 0.89489 1.91387 1.49412 1.95621 1.74979 1.22344 0.89110 1.07705 0.95200 1.44105 1.05536 1.49030 1.12867 0.68974 0.84964 0.86048 0.90064 0.88747 0.94403 0.92962 0.91422 0.82299 0.78172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.31 18.54 20.01 0.37 -14.93 16 2 C 0.25 6.35 15.43 89.44 1.38 7.73 16 3 C -0.03 -0.71 6.03 28.79 0.17 -0.54 16 4 C 0.12 3.50 5.34 86.38 0.46 3.96 16 5 N -0.59 -20.10 2.46 -830.88 -2.04 -22.14 16 6 C 0.22 8.43 4.67 85.63 0.40 8.83 16 7 C -0.57 -23.85 7.43 25.60 0.19 -23.66 16 8 H 0.06 2.65 7.81 -2.91 -0.02 2.63 16 9 C 0.04 1.75 5.10 84.65 0.43 2.18 16 10 N -0.90 -40.00 13.29 21.45 0.28 -39.71 16 11 Si 0.94 35.75 29.54 68.60 2.03 37.78 16 12 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 13 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 14 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 15 C 0.59 21.86 7.62 86.44 0.66 22.52 16 16 O -0.57 -22.60 16.51 -4.31 -0.07 -22.67 16 17 C -0.04 -1.46 6.62 40.36 0.27 -1.19 16 18 C -0.15 -5.22 10.66 22.61 0.24 -4.98 16 19 C -0.02 -0.76 7.98 22.06 0.18 -0.58 16 20 F -0.13 -4.28 17.32 44.97 0.78 -3.50 16 21 C 0.00 -0.10 11.90 83.47 0.99 0.90 16 22 N -0.51 -18.12 4.86 -183.39 -0.89 -19.02 16 23 H 0.45 17.25 3.37 -92.71 -0.31 16.94 16 24 H 0.13 2.48 8.14 -2.38 -0.02 2.46 16 25 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.08 2.37 7.47 -2.39 -0.02 2.35 16 27 H 0.09 2.59 8.08 -2.39 -0.02 2.57 16 28 H 0.04 1.50 5.14 -2.39 -0.01 1.48 16 29 H 0.05 1.98 8.07 -2.39 -0.02 1.96 16 30 H 0.28 11.84 8.31 -92.71 -0.77 11.07 16 31 H 0.16 5.05 8.06 -2.91 -0.02 5.02 16 32 H 0.20 4.96 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -51.14 293.28 6.69 -44.45 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.86 Total: 24.59 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 5.37 Total: 15.15 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -2.28 Total: -95.80 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.07 Total: -22.67 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.78 Total: -3.50 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 2.03 Total: 37.78 kcal Total: -51.14 6.69 -44.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339097623.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.687 kcal (2) G-P(sol) polarization free energy of solvation -51.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds