Wall clock time and date at job start Mon Mar 30 2020 00:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99820 * 180.02562 * 10 9 7 12 12 H 1.09004 * 112.84827 * 334.66548 * 11 10 9 13 13 C 1.53779 * 113.61628 * 105.86394 * 11 10 9 14 14 C 1.54046 * 86.98822 * 89.16074 * 13 11 10 15 15 H 1.09005 * 113.61419 * 270.88853 * 14 13 11 16 16 C 1.50699 * 113.69910 * 139.98865 * 14 13 11 17 17 C 1.38238 * 120.00431 * 322.19158 * 16 14 13 18 18 C 1.38224 * 120.01215 * 179.74342 * 17 16 14 19 19 C 1.38260 * 120.02290 * 0.55308 * 18 17 16 20 20 C 1.38189 * 120.01651 * 359.70343 * 19 18 17 21 21 C 1.38331 * 120.00897 * 142.46851 * 16 14 13 22 22 Cl 1.73595 * 120.01315 * 359.97438 * 21 16 14 23 23 C 1.53784 * 113.61488 * 203.47145 * 11 10 9 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 26 26 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 27 27 H 1.00907 * 111.00089 * 303.95190 * 10 9 7 28 28 H 1.08998 * 113.61129 * 203.66395 * 13 11 10 29 29 H 1.09000 * 113.61351 * 334.56561 * 13 11 10 30 30 H 1.07999 * 119.99318 * 359.97438 * 17 16 14 31 31 H 1.07993 * 119.98776 * 180.25682 * 18 17 16 32 32 H 1.08009 * 119.99100 * 179.72297 * 19 18 17 33 33 H 1.08002 * 120.01052 * 180.02562 * 20 19 18 34 34 H 1.08997 * 113.61123 * 25.42830 * 23 11 10 35 35 H 1.08997 * 113.61639 * 156.32970 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 1 0.5051 -4.8462 0.4299 13 6 1.5518 -5.6324 -1.3540 14 6 2.8616 -6.2825 -0.8693 15 1 3.7520 -5.7003 -1.1068 16 6 2.9936 -7.7349 -1.2489 17 6 1.8840 -8.5591 -1.2255 18 6 2.0038 -9.8900 -1.5787 19 6 3.2355 -10.4005 -1.9447 20 6 4.3464 -9.5788 -1.9634 21 6 4.2261 -8.2450 -1.6153 22 17 5.6211 -7.2121 -1.6387 23 6 2.3473 -6.0646 0.5635 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8897 27 1 2.8412 -3.5489 -0.7792 28 1 0.7382 -6.3435 -1.4966 29 1 1.6836 -4.9623 -2.2036 30 1 0.9226 -8.1621 -0.9347 31 1 1.1359 -10.5326 -1.5643 32 1 3.3294 -11.4416 -2.2163 33 1 5.3085 -9.9775 -2.2496 34 1 3.1209 -5.7432 1.2609 35 1 1.7508 -6.8936 0.9442 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578523361.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:40 Heat of formation + Delta-G solvation = 26.854827 kcal Electronic energy + Delta-G solvation = -17115.638050 eV Core-core repulsion = 14332.286431 eV Total energy + Delta-G solvation = -2783.351618 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.21499 -38.22860 -36.50793 -34.24103 -32.20198 -30.89495 -30.46600 -26.00266 -25.42386 -24.47945 -22.83866 -21.99233 -21.43100 -18.62497 -17.51098 -16.81502 -15.93329 -15.54245 -14.80634 -14.66294 -14.00640 -13.87915 -13.73652 -13.45111 -13.29675 -12.62665 -12.23824 -12.19423 -11.84248 -11.73936 -11.53163 -11.50375 -11.05220 -10.73708 -10.64139 -10.40224 -10.31132 -10.08946 -9.83862 -9.04367 -8.72639 -8.61901 -8.40934 -7.41699 -6.37943 -4.06856 0.98562 1.08066 2.06717 3.42778 3.45345 3.48741 3.64705 4.49480 4.54960 4.55963 4.76132 4.86131 4.94470 5.03043 5.09726 5.19149 5.25295 5.39011 5.50828 5.55339 5.78457 5.85709 5.91307 6.01994 6.05791 6.20246 6.24915 6.34541 6.45244 6.58977 6.61807 6.95552 7.16083 7.78759 8.14600 8.45116 8.57909 8.86926 9.64928 11.02100 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033135 B = 0.003925 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.821771 B = 7132.102694 C = 7779.118747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.076 2.924 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.596 4.596 8 H 0.056 0.944 9 C 0.184 3.816 10 N -0.662 5.662 11 C 0.071 3.929 12 H 0.076 0.924 13 C -0.162 4.162 14 C -0.081 4.081 15 H 0.106 0.894 16 C -0.050 4.050 17 C -0.107 4.107 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.111 4.111 21 C -0.036 4.036 22 Cl -0.066 7.066 23 C -0.121 4.121 24 H 0.267 0.733 25 H 0.019 0.981 26 H -0.023 1.023 27 H 0.334 0.666 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.077 0.923 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.002 -21.267 -4.120 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.189 4.189 3 Si 0.904 3.096 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.211 1.211 7 C -0.635 4.635 8 H 0.075 0.925 9 C 0.057 3.943 10 N -0.292 5.292 11 C -0.041 4.041 12 H 0.094 0.906 13 C -0.201 4.201 14 C -0.099 4.099 15 H 0.124 0.876 16 C -0.050 4.050 17 C -0.125 4.125 18 C -0.133 4.133 19 C -0.138 4.138 20 C -0.130 4.130 21 C -0.062 4.062 22 Cl -0.037 7.037 23 C -0.159 4.159 24 H 0.077 0.923 25 H 0.037 0.963 26 H -0.005 1.005 27 H 0.152 0.848 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.096 0.904 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.022 -19.480 -3.430 20.676 hybrid contribution -0.004 -1.786 -0.968 2.032 sum 6.017 -21.266 -4.398 22.534 Atomic orbital electron populations 1.70767 1.06890 1.30449 1.46953 1.25863 0.96489 1.02766 0.93786 0.83443 0.74559 0.74780 0.76797 1.21393 1.21444 1.21075 1.22035 0.94867 0.91280 1.55286 0.92549 1.19701 0.91228 0.88813 0.94536 1.60426 1.19937 1.00088 1.48705 1.22586 0.97051 0.90466 0.94035 0.90555 1.23859 0.96453 1.00179 0.99603 1.21756 0.99570 0.90335 0.98258 0.87554 1.19812 0.91316 0.96709 0.97201 1.21051 0.98399 0.93280 0.99779 1.21232 0.97727 0.95457 0.98854 1.21058 0.92314 0.99740 1.00697 1.21033 0.99768 0.91706 1.00466 1.20896 0.88587 0.91937 1.04824 1.98373 1.40766 1.67512 1.97058 1.23139 1.00019 0.97928 0.94797 0.92267 0.96317 1.00498 0.84843 0.90120 0.91322 0.85004 0.85572 0.85402 0.85192 0.90420 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.15 13.65 55.43 0.76 -27.40 16 2 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 3 Si 1.08 25.65 29.90 -169.99 -5.08 20.57 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.60 -17.24 9.32 -34.44 -0.32 -17.56 16 8 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 9 C 0.18 4.82 4.60 -4.98 -0.02 4.80 16 10 N -0.66 -14.29 6.55 -107.13 -0.70 -14.99 16 11 C 0.07 1.23 4.26 -66.90 -0.28 0.94 16 12 H 0.08 1.36 7.88 -51.93 -0.41 0.96 16 13 C -0.16 -2.38 7.00 -25.78 -0.18 -2.56 16 14 C -0.08 -1.13 3.52 -90.82 -0.32 -1.45 16 15 H 0.11 1.61 6.47 -51.93 -0.34 1.27 16 16 C -0.05 -0.62 5.29 -104.59 -0.55 -1.17 16 17 C -0.11 -1.15 8.60 -39.59 -0.34 -1.49 16 18 C -0.11 -1.04 10.05 -39.58 -0.40 -1.44 16 19 C -0.12 -1.05 10.04 -39.59 -0.40 -1.45 16 20 C -0.11 -1.11 9.83 -39.55 -0.39 -1.50 16 21 C -0.04 -0.43 6.31 -39.50 -0.25 -0.68 16 22 Cl -0.07 -0.82 27.16 -51.86 -1.41 -2.23 16 23 C -0.12 -1.77 7.35 -25.91 -0.19 -1.96 16 24 H 0.27 8.19 7.22 -40.82 -0.29 7.89 16 25 H 0.02 0.52 8.00 -51.93 -0.42 0.11 16 26 H -0.02 -0.62 8.01 -51.93 -0.42 -1.03 16 27 H 0.33 7.02 8.08 -39.29 -0.32 6.71 16 28 H 0.08 1.03 6.34 -51.93 -0.33 0.70 16 29 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 30 H 0.13 1.29 6.69 -52.49 -0.35 0.94 16 31 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.08 0.99 7.71 -51.93 -0.40 0.59 16 LS Contribution 304.84 15.07 4.59 4.59 Total: -1.00 -30.92 304.84 -10.17 -41.10 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.59 Total: 3.55 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -3.74 Total: -25.19 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.05 Total: -42.39 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.08 Total: 20.57 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.41 Total: -2.23 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.92 -10.17 -41.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578523361.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.950 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds