Wall clock time and date at job start Mon Mar 30 2020 00:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99820 * 180.02562 * 10 9 7 12 12 H 1.09004 * 112.84827 * 334.66548 * 11 10 9 13 13 C 1.53779 * 113.61628 * 105.86394 * 11 10 9 14 14 C 1.54046 * 86.98822 * 89.16074 * 13 11 10 15 15 H 1.09005 * 113.61419 * 270.88853 * 14 13 11 16 16 C 1.50699 * 113.69910 * 139.98865 * 14 13 11 17 17 C 1.38238 * 120.00431 * 322.19158 * 16 14 13 18 18 C 1.38224 * 120.01215 * 179.74342 * 17 16 14 19 19 C 1.38260 * 120.02290 * 0.55308 * 18 17 16 20 20 C 1.38189 * 120.01651 * 359.70343 * 19 18 17 21 21 C 1.38331 * 120.00897 * 142.46851 * 16 14 13 22 22 Cl 1.73595 * 120.01315 * 359.97438 * 21 16 14 23 23 C 1.53784 * 113.61488 * 203.47145 * 11 10 9 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 26 26 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 27 27 H 1.00907 * 111.00089 * 303.95190 * 10 9 7 28 28 H 1.08998 * 113.61129 * 203.66395 * 13 11 10 29 29 H 1.09000 * 113.61351 * 334.56561 * 13 11 10 30 30 H 1.07999 * 119.99318 * 359.97438 * 17 16 14 31 31 H 1.07993 * 119.98776 * 180.25682 * 18 17 16 32 32 H 1.08009 * 119.99100 * 179.72297 * 19 18 17 33 33 H 1.08002 * 120.01052 * 180.02562 * 20 19 18 34 34 H 1.08997 * 113.61123 * 25.42830 * 23 11 10 35 35 H 1.08997 * 113.61639 * 156.32970 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 1 0.5051 -4.8462 0.4299 13 6 1.5518 -5.6324 -1.3540 14 6 2.8616 -6.2825 -0.8693 15 1 3.7520 -5.7003 -1.1068 16 6 2.9936 -7.7349 -1.2489 17 6 1.8840 -8.5591 -1.2255 18 6 2.0038 -9.8900 -1.5787 19 6 3.2355 -10.4005 -1.9447 20 6 4.3464 -9.5788 -1.9634 21 6 4.2261 -8.2450 -1.6153 22 17 5.6211 -7.2121 -1.6387 23 6 2.3473 -6.0646 0.5635 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8897 27 1 2.8412 -3.5489 -0.7792 28 1 0.7382 -6.3435 -1.4966 29 1 1.6836 -4.9623 -2.2036 30 1 0.9226 -8.1621 -0.9347 31 1 1.1359 -10.5326 -1.5643 32 1 3.3294 -11.4416 -2.2163 33 1 5.3085 -9.9775 -2.2496 34 1 3.1209 -5.7432 1.2609 35 1 1.7508 -6.8936 0.9442 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578523361.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:39 Heat of formation + Delta-G solvation = 8.932608 kcal Electronic energy + Delta-G solvation = -17116.415215 eV Core-core repulsion = 14332.286431 eV Total energy + Delta-G solvation = -2784.128784 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.25053 -39.31612 -37.39162 -36.18569 -33.95953 -31.66605 -31.63883 -27.90723 -26.64776 -25.75796 -24.20803 -23.53571 -22.45471 -19.92821 -19.03655 -18.26166 -16.91710 -16.58313 -16.21844 -15.91299 -15.60722 -15.12466 -14.89837 -14.74120 -14.65350 -14.21228 -13.72904 -13.41423 -13.22208 -12.99254 -12.70577 -12.56985 -12.51003 -12.42558 -12.05263 -11.91776 -11.60873 -11.45741 -11.16330 -10.74148 -10.62548 -9.83087 -9.56961 -9.20756 -8.72928 -6.43759 0.20015 0.30802 1.20428 1.52743 1.61986 1.80455 2.54326 2.65398 3.11764 3.29083 3.52535 3.66471 3.79838 3.93705 4.04126 4.12289 4.22099 4.40804 4.42789 4.60617 4.70693 4.74153 4.75198 4.81686 4.92305 5.01524 5.08587 5.13428 5.24087 5.33336 5.48110 5.55278 5.74055 5.89399 6.01005 6.37921 6.53418 6.66291 7.38165 8.67163 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033135 B = 0.003925 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.821771 B = 7132.102694 C = 7779.118747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.036 4.036 3 Si 1.126 2.874 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.281 1.281 7 C -0.613 4.613 8 H 0.054 0.946 9 C 0.197 3.803 10 N -0.665 5.665 11 C 0.052 3.948 12 H 0.067 0.933 13 C -0.150 4.150 14 C -0.069 4.069 15 H 0.090 0.910 16 C -0.070 4.070 17 C -0.114 4.114 18 C -0.111 4.111 19 C -0.112 4.112 20 C -0.116 4.116 21 C -0.053 4.053 22 Cl -0.081 7.081 23 C -0.107 4.107 24 H 0.254 0.746 25 H -0.003 1.003 26 H -0.041 1.041 27 H 0.335 0.665 28 H 0.106 0.894 29 H 0.052 0.948 30 H 0.141 0.859 31 H 0.155 0.845 32 H 0.160 0.840 33 H 0.146 0.854 34 H 0.064 0.936 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.477 -23.220 -4.516 24.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.233 4.233 3 Si 0.946 3.054 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.206 1.206 7 C -0.652 4.652 8 H 0.072 0.928 9 C 0.069 3.931 10 N -0.294 5.294 11 C -0.059 4.059 12 H 0.086 0.914 13 C -0.189 4.189 14 C -0.088 4.088 15 H 0.108 0.892 16 C -0.071 4.071 17 C -0.132 4.132 18 C -0.129 4.129 19 C -0.130 4.130 20 C -0.135 4.135 21 C -0.080 4.080 22 Cl -0.052 7.052 23 C -0.145 4.145 24 H 0.064 0.936 25 H 0.015 0.985 26 H -0.024 1.024 27 H 0.153 0.847 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.158 0.842 31 H 0.173 0.827 32 H 0.178 0.822 33 H 0.163 0.837 34 H 0.083 0.917 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.502 -21.477 -3.823 22.763 hybrid contribution -0.185 -1.331 -0.855 1.593 sum 6.317 -22.808 -4.679 24.125 Atomic orbital electron populations 1.70898 1.07880 1.29744 1.48756 1.27467 0.96549 1.06786 0.92543 0.82828 0.74050 0.70683 0.77823 1.19806 1.19462 1.20609 1.22404 0.94988 0.92698 1.55061 0.92799 1.19373 0.91253 0.89959 0.92502 1.60326 1.19393 1.00741 1.48981 1.22733 0.96919 0.89435 0.96777 0.91422 1.23774 0.98038 0.99917 0.97142 1.21516 0.98258 0.91726 0.97284 0.89156 1.19699 0.92370 0.95751 0.99254 1.21229 0.98080 0.94045 0.99881 1.21602 0.98964 0.94970 0.97360 1.21482 0.91563 1.01036 0.98948 1.21316 1.01198 0.90950 1.00017 1.21089 0.88063 0.92748 1.06054 1.98363 1.41507 1.68148 1.97195 1.23070 0.99239 0.96992 0.95188 0.93638 0.98511 1.02382 0.84696 0.87616 0.92881 0.84180 0.82686 0.82227 0.83664 0.91740 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.71 13.65 21.45 0.29 -58.42 16 2 C -0.04 -2.12 5.46 84.65 0.46 -1.66 16 3 Si 1.13 51.30 29.90 68.60 2.05 53.35 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.61 -36.19 9.32 25.60 0.24 -35.95 16 8 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 9 C 0.20 10.73 4.60 85.56 0.39 11.12 16 10 N -0.66 -29.59 6.55 -492.84 -3.23 -32.82 16 11 C 0.05 1.85 4.26 45.44 0.19 2.04 16 12 H 0.07 2.48 7.88 -2.39 -0.02 2.46 16 13 C -0.15 -4.37 7.00 31.21 0.22 -4.15 16 14 C -0.07 -1.91 3.52 -10.92 -0.04 -1.95 16 15 H 0.09 2.78 6.47 -2.38 -0.02 2.76 16 16 C -0.07 -1.64 5.29 -19.84 -0.11 -1.75 16 17 C -0.11 -2.15 8.60 22.27 0.19 -1.96 16 18 C -0.11 -1.59 10.05 22.27 0.22 -1.36 16 19 C -0.11 -1.53 10.04 22.26 0.22 -1.31 16 20 C -0.12 -2.04 9.83 22.29 0.22 -1.82 16 21 C -0.05 -1.21 6.31 22.32 0.14 -1.07 16 22 Cl -0.08 -1.99 27.16 -2.72 -0.07 -2.07 16 23 C -0.11 -3.07 7.35 31.12 0.23 -2.85 16 24 H 0.25 16.16 7.22 -92.71 -0.67 15.49 16 25 H 0.00 -0.18 8.00 -2.39 -0.02 -0.20 16 26 H -0.04 -2.36 8.01 -2.38 -0.02 -2.38 16 27 H 0.34 14.58 8.08 -89.69 -0.72 13.86 16 28 H 0.11 2.54 6.34 -2.39 -0.02 2.53 16 29 H 0.05 1.71 8.09 -2.39 -0.02 1.69 16 30 H 0.14 2.32 6.69 -2.91 -0.02 2.30 16 31 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 32 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.10 2.44 7.71 -2.39 -0.02 2.42 16 Total: -1.00 -67.79 304.84 2.10 -65.69 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.47 Total: 16.92 kcal Atomic # 6 Polarization: -45.25 SS G_CDS: 2.59 Total: -42.66 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -2.94 Total: -91.24 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.05 Total: 53.35 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.07 Total: -2.07 kcal Total: -67.79 2.10 -65.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578523361.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.627 kcal (2) G-P(sol) polarization free energy of solvation -67.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds