Wall clock time and date at job start Mon Mar 30 2020 00:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29025 * 124.91780 * 2 1 4 4 C 1.31777 * 117.12631 * 179.97438 * 3 2 1 5 5 C 1.50704 * 122.75172 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47086 * 275.02540 * 5 4 3 7 7 C 1.46904 * 110.99779 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46858 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47753 * 305.00128 * 8 7 6 10 10 C 1.47204 * 109.47042 * 64.99895 * 8 7 6 11 11 N 6.65279 * 109.12111 * 322.58516 * 2 1 3 12 12 C 1.52996 * 109.47153 * 184.99851 * 8 7 6 13 13 C 1.50702 * 109.47159 * 175.00123 * 12 8 7 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 8 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 8 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 C 1.33640 * 114.50372 * 0.22936 * 4 3 2 22 22 S 1.70980 * 124.91840 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.46966 * 90.00412 * 1 2 3 24 24 H 1.09003 * 109.47415 * 209.99878 * 1 2 3 25 25 H 1.09004 * 109.47422 * 330.00795 * 1 2 3 26 26 H 1.09003 * 109.47324 * 155.02359 * 5 4 3 27 27 H 1.09004 * 109.47052 * 35.02518 * 5 4 3 28 28 H 1.00897 * 111.00127 * 56.04185 * 6 5 4 29 29 H 1.08997 * 109.46933 * 59.99775 * 7 6 5 30 30 H 1.08996 * 109.47325 * 299.99917 * 7 6 5 31 31 H 1.09004 * 109.47066 * 55.00326 * 12 8 7 32 32 H 1.08994 * 109.47405 * 295.00156 * 12 8 7 33 33 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 34 34 H 1.07992 * 126.04342 * 179.77123 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 0.0005 5 6 4.5307 2.0245 0.0000 6 7 4.7572 2.4745 -1.3799 7 6 5.7087 3.5931 -1.4193 8 6 5.9192 4.0327 -2.8696 9 1 6.2304 3.1761 -3.4675 10 6 4.6596 4.5737 -3.4060 11 7 3.6862 4.9925 -3.8191 12 6 7.0018 5.1124 -2.9233 13 6 7.2961 5.4576 -4.3604 14 1 6.7639 4.9573 -5.1559 15 6 8.2405 6.4168 -4.6595 16 7 8.8883 7.0263 -3.6907 17 14 8.5998 6.8502 -6.4406 18 1 7.3610 7.3525 -7.0874 19 1 9.6472 7.9016 -6.4925 20 1 9.0772 5.6407 -7.1578 21 6 3.9354 -0.4006 -0.0039 22 16 2.4857 -1.4020 0.0006 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8901 0.5137 26 1 5.4747 1.6954 0.4345 27 1 4.1272 2.8481 0.5892 28 1 3.8875 2.7242 -1.8262 29 1 6.6609 3.2752 -0.9946 30 1 5.3130 4.4274 -0.8402 31 1 7.9087 4.7416 -2.4456 32 1 6.6534 6.0027 -2.3998 33 1 9.5529 7.7008 -3.9012 34 1 4.9544 -0.7581 -0.0078 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591729106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:28 Heat of formation + Delta-G solvation = 54.909691 kcal Electronic energy + Delta-G solvation = -16570.863407 eV Core-core repulsion = 13823.064796 eV Total energy + Delta-G solvation = -2747.798611 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06732 -37.37124 -35.21868 -33.67634 -32.60297 -31.27918 -28.68645 -27.30727 -25.33352 -22.88912 -22.39042 -21.72280 -19.85583 -17.79021 -16.68288 -16.60385 -15.92586 -15.38677 -14.94206 -14.68215 -14.21713 -13.94559 -13.70366 -13.21565 -12.92296 -12.78869 -12.46031 -12.44548 -12.10576 -12.01075 -11.83537 -11.36153 -11.23793 -11.00705 -10.71558 -10.55752 -10.25248 -9.81552 -9.56770 -9.55893 -9.25055 -8.91322 -8.44637 -8.34557 -6.08850 -4.11930 0.55625 1.18861 1.55452 2.59679 3.32065 3.36070 3.39946 3.58516 3.64410 3.85658 4.37788 4.48244 4.75190 4.82334 4.97461 5.08074 5.15259 5.17491 5.29130 5.43848 5.52897 5.59586 5.68510 5.77495 6.02347 6.13265 6.34766 6.54364 7.03017 7.37436 7.44050 7.53907 7.62075 7.86170 8.23921 8.42501 8.92362 9.53386 11.02034 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.038904 B = 0.003271 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.547770 B = 8558.881814 C = 8798.642500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.047 3.953 3 N -0.470 5.470 4 C 0.073 3.927 5 C 0.132 3.868 6 N -0.687 5.687 7 C 0.067 3.933 8 C 0.008 3.992 9 H 0.111 0.889 10 C 0.239 3.761 11 N -0.475 5.475 12 C 0.033 3.967 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.236 4.236 22 S 0.105 5.895 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.048 0.952 28 H 0.343 0.657 29 H 0.094 0.906 30 H 0.037 0.963 31 H 0.040 0.960 32 H 0.025 0.975 33 H 0.263 0.737 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.725 -17.412 11.241 23.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.231 4.231 3 N -0.185 5.185 4 C -0.059 4.059 5 C 0.001 3.999 6 N -0.319 5.319 7 C -0.063 4.063 8 C -0.014 4.014 9 H 0.129 0.871 10 C -0.077 4.077 11 N -0.152 5.152 12 C -0.006 4.006 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.375 4.375 22 S 0.359 5.641 23 H 0.105 0.895 24 H 0.098 0.902 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.067 0.933 28 H 0.161 0.839 29 H 0.112 0.888 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.040 -17.680 10.534 23.843 hybrid contribution 0.775 1.590 -0.602 1.868 sum -11.265 -16.090 9.932 22.010 Atomic orbital electron populations 1.20440 0.85267 1.04076 1.03983 1.26996 1.01718 0.90897 1.03528 1.66089 1.04744 1.31743 1.15931 1.20190 0.89708 0.94435 1.01548 1.20426 0.95634 0.92816 0.91054 1.60641 1.16767 1.38890 1.15558 1.22109 0.96972 0.91056 0.96133 1.19326 0.87416 1.00906 0.93782 0.87124 1.29372 0.93696 0.92114 0.92536 1.81090 1.13685 1.10637 1.09810 1.19159 0.91463 0.91736 0.98201 1.21117 1.21687 1.21842 0.91888 0.92551 1.24952 0.95841 0.95843 0.97320 1.69930 1.25461 1.26033 1.31639 0.86648 0.78025 0.78242 0.85130 1.20266 1.21188 1.20007 1.26825 1.03032 0.95529 1.12147 1.83905 0.98324 1.13072 1.68802 0.89538 0.90182 0.89304 0.88970 0.93347 0.83886 0.88810 0.94433 0.94153 0.95704 0.92740 0.80292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.46 36.00 0.38 -0.18 16 2 C 0.05 0.50 7.39 -13.46 -0.10 0.40 16 3 N -0.47 -6.22 10.53 -8.06 -0.08 -6.31 16 4 C 0.07 0.90 6.25 -84.22 -0.53 0.38 16 5 C 0.13 1.61 6.12 -4.97 -0.03 1.58 16 6 N -0.69 -9.73 6.49 -115.05 -0.75 -10.47 16 7 C 0.07 1.01 5.12 -3.82 -0.02 0.99 16 8 C 0.01 0.14 2.42 -93.41 -0.23 -0.08 16 9 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 10 C 0.24 5.01 12.98 -20.71 -0.27 4.74 16 11 N -0.48 -10.75 18.55 42.21 0.78 -9.97 16 12 C 0.03 0.77 4.42 -27.88 -0.12 0.65 16 13 C -0.53 -14.15 8.60 -34.44 -0.30 -14.45 16 14 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.24 -2.45 11.12 29.12 0.32 -2.13 16 22 S 0.11 0.95 23.18 -107.50 -2.49 -1.55 16 23 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.34 5.42 7.80 -39.29 -0.31 5.11 16 29 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 316.37 15.07 4.77 4.77 Total: -1.00 -31.29 316.37 -7.53 -38.82 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -4.49 Total: -0.35 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -0.99 Total: -6.48 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.69 Total: -51.66 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.49 Total: -1.55 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.29 -7.53 -38.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591729106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.733 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds