Wall clock time and date at job start Mon Mar 30 2020 00:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29025 * 124.91780 * 2 1 4 4 C 1.31777 * 117.12631 * 179.97438 * 3 2 1 5 5 C 1.50704 * 122.75172 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47086 * 275.02540 * 5 4 3 7 7 C 1.46904 * 110.99779 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46858 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47753 * 305.00128 * 8 7 6 10 10 C 1.47204 * 109.47042 * 64.99895 * 8 7 6 11 11 N 6.65279 * 109.12111 * 322.58516 * 2 1 3 12 12 C 1.52996 * 109.47153 * 184.99851 * 8 7 6 13 13 C 1.50702 * 109.47159 * 175.00123 * 12 8 7 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 8 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 8 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 C 1.33640 * 114.50372 * 0.22936 * 4 3 2 22 22 S 1.70980 * 124.91840 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.46966 * 90.00412 * 1 2 3 24 24 H 1.09003 * 109.47415 * 209.99878 * 1 2 3 25 25 H 1.09004 * 109.47422 * 330.00795 * 1 2 3 26 26 H 1.09003 * 109.47324 * 155.02359 * 5 4 3 27 27 H 1.09004 * 109.47052 * 35.02518 * 5 4 3 28 28 H 1.00897 * 111.00127 * 56.04185 * 6 5 4 29 29 H 1.08997 * 109.46933 * 59.99775 * 7 6 5 30 30 H 1.08996 * 109.47325 * 299.99917 * 7 6 5 31 31 H 1.09004 * 109.47066 * 55.00326 * 12 8 7 32 32 H 1.08994 * 109.47405 * 295.00156 * 12 8 7 33 33 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 34 34 H 1.07992 * 126.04342 * 179.77123 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 0.0005 5 6 4.5307 2.0245 0.0000 6 7 4.7572 2.4745 -1.3799 7 6 5.7087 3.5931 -1.4193 8 6 5.9192 4.0327 -2.8696 9 1 6.2304 3.1761 -3.4675 10 6 4.6596 4.5737 -3.4060 11 7 3.6862 4.9925 -3.8191 12 6 7.0018 5.1124 -2.9233 13 6 7.2961 5.4576 -4.3604 14 1 6.7639 4.9573 -5.1559 15 6 8.2405 6.4168 -4.6595 16 7 8.8883 7.0263 -3.6907 17 14 8.5998 6.8502 -6.4406 18 1 7.3610 7.3525 -7.0874 19 1 9.6472 7.9016 -6.4925 20 1 9.0772 5.6407 -7.1578 21 6 3.9354 -0.4006 -0.0039 22 16 2.4857 -1.4020 0.0006 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8901 0.5137 26 1 5.4747 1.6954 0.4345 27 1 4.1272 2.8481 0.5892 28 1 3.8875 2.7242 -1.8262 29 1 6.6609 3.2752 -0.9946 30 1 5.3130 4.4274 -0.8402 31 1 7.9087 4.7416 -2.4456 32 1 6.6534 6.0027 -2.3998 33 1 9.5529 7.7008 -3.9012 34 1 4.9544 -0.7581 -0.0078 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591729106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:27 Heat of formation + Delta-G solvation = 34.118449 kcal Electronic energy + Delta-G solvation = -16571.764983 eV Core-core repulsion = 13823.064796 eV Total energy + Delta-G solvation = -2748.700187 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.88871 -38.84149 -36.60133 -35.46555 -33.87146 -32.61845 -29.59650 -28.65338 -26.70710 -24.17358 -23.59953 -23.21506 -20.65049 -18.70341 -18.47989 -18.18706 -17.08467 -16.67851 -16.21519 -15.83422 -15.33989 -15.04756 -14.81217 -14.45828 -14.27325 -14.20595 -13.89332 -13.43739 -13.35079 -13.17014 -13.06963 -12.89136 -12.73428 -12.47080 -12.37991 -12.26709 -11.95341 -11.42143 -11.17820 -10.60236 -10.54752 -10.32876 -9.72498 -9.42550 -8.19483 -6.27646 -0.20877 0.46808 0.78660 1.41126 1.42508 1.49743 1.74000 1.91088 1.93617 2.41636 3.10710 3.15342 3.23526 3.37111 3.97619 4.06868 4.25094 4.39130 4.43241 4.52624 4.59517 4.65174 4.73985 4.86827 4.95263 4.97026 5.02391 5.25410 5.47158 5.62429 5.79000 5.91762 6.16788 6.21050 6.72946 6.83726 6.86668 7.40707 8.91232 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.038904 B = 0.003271 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.547770 B = 8558.881814 C = 8798.642500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.030 3.970 3 N -0.510 5.510 4 C 0.048 3.952 5 C 0.134 3.866 6 N -0.685 5.685 7 C 0.078 3.922 8 C 0.019 3.981 9 H 0.124 0.876 10 C 0.249 3.751 11 N -0.508 5.508 12 C 0.040 3.960 13 C -0.542 4.542 14 H 0.053 0.947 15 C 0.012 3.988 16 N -0.923 5.923 17 Si 0.948 3.052 18 H -0.282 1.282 19 H -0.281 1.281 20 H -0.263 1.263 21 C -0.241 4.241 22 S 0.154 5.846 23 H 0.093 0.907 24 H 0.105 0.895 25 H 0.084 0.916 26 H 0.115 0.885 27 H 0.040 0.960 28 H 0.331 0.669 29 H 0.116 0.884 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.000 1.000 33 H 0.264 0.736 34 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.707 -19.286 11.324 24.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.248 4.248 3 N -0.227 5.227 4 C -0.084 4.084 5 C 0.003 3.997 6 N -0.315 5.315 7 C -0.052 4.052 8 C -0.003 4.003 9 H 0.142 0.858 10 C -0.066 4.066 11 N -0.185 5.185 12 C 0.001 3.999 13 C -0.580 4.580 14 H 0.071 0.929 15 C -0.187 4.187 16 N -0.563 5.563 17 Si 0.774 3.226 18 H -0.208 1.208 19 H -0.206 1.206 20 H -0.187 1.187 21 C -0.381 4.381 22 S 0.409 5.591 23 H 0.111 0.889 24 H 0.124 0.876 25 H 0.103 0.897 26 H 0.133 0.867 27 H 0.058 0.942 28 H 0.148 0.852 29 H 0.134 0.866 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.019 0.981 33 H 0.073 0.927 34 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -12.027 -19.577 10.623 25.313 hybrid contribution 0.726 2.098 -0.597 2.299 sum -11.301 -17.479 10.026 23.103 Atomic orbital electron populations 1.20589 0.83391 1.05172 1.04702 1.27556 1.03152 0.91292 1.02754 1.66101 1.05477 1.33467 1.17605 1.20238 0.89704 0.95121 1.03295 1.20485 0.96853 0.92787 0.89569 1.60654 1.15928 1.37913 1.17008 1.21986 0.98405 0.91489 0.93311 1.19268 0.84955 0.99591 0.96445 0.85812 1.29821 0.93800 0.91366 0.91660 1.81085 1.14853 1.11513 1.11068 1.18981 0.92767 0.92138 0.96033 1.21538 1.21260 1.21593 0.93573 0.92885 1.25707 0.96004 0.96051 1.00952 1.70022 1.26160 1.26711 1.33359 0.85756 0.77598 0.78427 0.80837 1.20797 1.20637 1.18713 1.27145 1.04697 0.95375 1.10850 1.83690 0.96700 1.11283 1.67469 0.88891 0.87626 0.89698 0.86732 0.94211 0.85191 0.86559 0.94832 0.94106 0.98137 0.92670 0.78398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.46 71.23 0.75 -0.26 16 2 C 0.03 0.60 7.39 88.52 0.65 1.25 16 3 N -0.51 -13.26 10.53 -179.40 -1.89 -15.14 16 4 C 0.05 1.13 6.25 41.52 0.26 1.39 16 5 C 0.13 3.10 6.12 85.56 0.52 3.62 16 6 N -0.68 -18.58 6.49 -517.92 -3.36 -21.94 16 7 C 0.08 2.24 5.12 86.30 0.44 2.68 16 8 C 0.02 0.70 2.42 -12.60 -0.03 0.67 16 9 H 0.12 4.25 8.14 -2.39 -0.02 4.23 16 10 C 0.25 10.39 12.98 89.43 1.16 11.55 16 11 N -0.51 -23.05 18.55 20.02 0.37 -22.68 16 12 C 0.04 1.83 4.42 29.85 0.13 1.97 16 13 C -0.54 -28.95 8.60 25.60 0.22 -28.73 16 14 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 15 C 0.01 0.66 5.46 84.66 0.46 1.12 16 16 N -0.92 -53.15 13.29 21.45 0.28 -52.87 16 17 Si 0.95 43.72 29.54 68.60 2.03 45.74 16 18 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 21 C -0.24 -4.54 11.12 66.78 0.74 -3.80 16 22 S 0.15 2.44 23.18 -56.49 -1.31 1.13 16 23 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.11 2.07 8.10 -2.39 -0.02 2.05 16 27 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.33 10.34 7.80 -89.70 -0.70 9.64 16 29 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 34 H 0.20 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -66.57 316.37 1.85 -64.73 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.41 Total: 9.57 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 5.31 Total: -8.53 kcal Atomic # 7 Polarization: -108.04 SS G_CDS: -4.59 Total: -112.63 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.31 Total: 1.13 kcal Total: -66.57 1.85 -64.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591729106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.846 kcal (2) G-P(sol) polarization free energy of solvation -66.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds