Wall clock time and date at job start Mon Mar 30 2020 00:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81407 * 102.99858 * 2 1 4 4 C 1.52999 * 109.47168 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.47134 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00403 * 180.02562 * 5 4 3 7 7 O 1.21592 * 119.99740 * 0.02562 * 6 5 4 8 8 C 1.47639 * 120.00339 * 180.02562 * 6 5 4 9 9 C 1.40007 * 119.89573 * 0.24611 * 8 6 5 10 10 C 1.36318 * 120.10468 * 180.25591 * 9 8 6 11 11 C 1.40884 * 119.89177 * 359.47662 * 10 9 8 12 12 C 1.41116 * 120.10368 * 180.29746 * 11 10 9 13 13 H 1.07997 * 120.00134 * 154.53831 * 12 11 10 14 14 C 1.40227 * 119.99714 * 334.53632 * 12 11 10 15 15 N 1.30644 * 120.00033 * 343.04996 * 14 12 11 16 16 Si 1.86799 * 119.99848 * 163.05218 * 14 12 11 17 17 H 1.48501 * 109.47314 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47265 * 119.99809 * 16 14 12 19 19 H 1.48498 * 109.47305 * 239.99792 * 16 14 12 20 20 C 1.40889 * 119.79628 * 0.27580 * 11 10 9 21 21 C 1.36316 * 119.88883 * 359.97438 * 20 11 10 22 22 H 1.09005 * 109.46588 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46704 * 299.99614 * 1 2 3 24 24 H 1.09002 * 109.47111 * 59.99720 * 1 2 3 25 25 H 1.08997 * 109.46674 * 60.00250 * 3 2 1 26 26 H 1.08995 * 109.47083 * 300.00643 * 3 2 1 27 27 H 1.09000 * 109.46513 * 60.00355 * 4 3 2 28 28 H 1.08994 * 109.47508 * 300.00851 * 4 3 2 29 29 H 0.97005 * 120.00342 * 0.02562 * 5 4 3 30 30 H 1.08000 * 119.95276 * 0.03420 * 9 8 6 31 31 H 1.08007 * 120.05277 * 179.74755 * 10 9 8 32 32 H 0.97005 * 119.99903 * 179.97438 * 15 14 12 33 33 H 1.08002 * 120.05358 * 180.02562 * 20 11 10 34 34 H 1.08002 * 119.94674 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7423 1.9401 0.0006 5 7 4.0718 3.3675 0.0013 6 6 5.3606 3.7616 0.0014 7 8 6.2499 2.9324 0.0005 8 6 5.6927 5.2002 0.0026 9 6 4.6670 6.1531 0.0088 10 6 4.9687 7.4825 0.0047 11 6 6.3152 7.8969 0.0052 12 6 6.6326 9.2719 0.0073 13 1 7.5769 9.6075 0.4099 14 6 5.7219 10.2024 -0.5134 15 7 4.7491 9.8014 -1.2876 16 14 5.9000 12.0153 -0.1000 17 1 7.0737 12.2074 0.7892 18 1 6.0939 12.7916 -1.3510 19 1 4.6735 12.4883 0.5909 20 6 7.3439 6.9342 0.0042 21 6 7.0324 5.6071 0.0032 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8031 2.2371 0.8900 26 1 1.8030 2.2372 -0.8899 27 1 4.1615 1.4704 -0.8892 28 1 4.1609 1.4705 0.8907 29 1 3.3624 4.0291 0.0016 30 1 3.6350 5.8346 0.0133 31 1 4.1767 8.2169 0.0053 32 1 4.1189 10.4451 -1.6475 33 1 8.3776 7.2472 0.0051 34 1 7.8203 4.8684 0.0020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611142625.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:36 Heat of formation + Delta-G solvation = -32.685972 kcal Electronic energy + Delta-G solvation = -16706.650902 eV Core-core repulsion = 13922.761107 eV Total energy + Delta-G solvation = -2783.889795 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.12938 -37.18281 -34.90509 -33.88944 -31.09033 -29.69732 -29.45474 -29.11620 -25.96859 -23.28606 -21.72833 -20.89989 -19.72341 -17.55515 -16.99341 -16.27979 -15.63811 -15.58617 -15.34157 -14.11676 -14.03003 -14.02477 -13.90100 -13.39657 -13.23913 -12.90553 -12.56156 -12.13248 -11.96586 -11.94401 -11.75605 -11.38320 -11.28973 -10.96425 -10.66892 -10.29187 -10.05543 -9.58915 -9.39040 -9.01270 -8.67562 -7.92946 -7.75028 -7.56281 -7.05551 -4.63002 1.33042 2.19747 2.30640 2.88678 2.93526 2.99111 3.00975 3.72273 3.84162 3.87720 4.53957 4.63661 4.74671 4.83975 4.85929 5.24764 5.39853 5.53720 5.75665 5.79167 6.00013 6.11279 6.29677 6.74304 6.80533 6.84612 7.01513 7.10423 7.41150 7.61721 7.75297 7.83576 8.04581 8.17727 8.37453 8.60735 8.72477 9.02793 9.86561 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033220 B = 0.003453 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.674303 B = 8107.471803 C = 8859.184267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.248 6.248 3 C -0.101 4.101 4 C 0.141 3.859 5 N -0.741 5.741 6 C 0.573 3.427 7 O -0.572 6.572 8 C -0.284 4.284 9 C -0.063 4.063 10 C -0.177 4.177 11 C 0.129 3.871 12 C -0.442 4.442 13 H 0.085 0.915 14 C 0.074 3.926 15 N -0.773 5.773 16 Si 0.913 3.087 17 H -0.257 1.257 18 H -0.271 1.271 19 H -0.269 1.269 20 C -0.238 4.238 21 C -0.021 4.021 22 H 0.102 0.898 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.397 0.603 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.286 0.714 33 H 0.099 0.901 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.623 -7.636 1.571 12.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.023 6.023 3 C -0.249 4.249 4 C 0.016 3.984 5 N -0.396 5.396 6 C 0.368 3.632 7 O -0.454 6.454 8 C -0.288 4.288 9 C -0.082 4.082 10 C -0.196 4.196 11 C 0.125 3.875 12 C -0.470 4.470 13 H 0.104 0.896 14 C -0.147 4.147 15 N -0.396 5.396 16 Si 0.737 3.263 17 H -0.181 1.181 18 H -0.197 1.197 19 H -0.194 1.194 20 C -0.258 4.258 21 C -0.041 4.041 22 H 0.120 0.880 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.106 0.894 31 H 0.138 0.862 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.531 -9.021 1.417 12.497 hybrid contribution -1.381 2.177 0.008 2.578 sum -9.913 -6.844 1.425 12.130 Atomic orbital electron populations 1.23397 0.94129 1.06553 1.05050 1.86953 1.07187 1.10079 1.98099 1.23589 1.00442 0.95238 1.05665 1.20761 0.90791 0.83698 1.03165 1.45888 1.08595 1.06364 1.78741 1.18598 0.80982 0.89520 0.74150 1.90647 1.47090 1.55062 1.52617 1.18876 0.94538 0.89754 1.25659 1.20463 0.95632 0.93790 0.98352 1.20973 0.97109 0.94015 1.07549 1.17800 0.91463 0.92951 0.85248 1.19886 1.02884 0.91207 1.33009 0.89650 1.26102 0.93744 1.02412 0.92473 1.69747 1.11800 1.37763 1.20309 0.86162 0.79851 0.80758 0.79527 1.18054 1.19660 1.19403 1.20737 0.97995 0.92422 1.14600 1.20371 0.94234 0.95341 0.94118 0.87976 0.90403 0.90392 0.89358 0.89325 0.91065 0.91076 0.76739 0.89387 0.86196 0.90299 0.88307 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.76 101.05 1.09 0.22 16 2 S -0.25 -2.65 22.38 -107.50 -2.41 -5.06 16 3 C -0.10 -1.08 6.05 37.16 0.22 -0.85 16 4 C 0.14 2.01 5.68 -4.05 -0.02 1.99 16 5 N -0.74 -12.26 5.50 -61.32 -0.34 -12.60 16 6 C 0.57 12.23 7.76 -12.42 -0.10 12.13 16 7 O -0.57 -13.81 16.32 5.29 0.09 -13.73 16 8 C -0.28 -6.45 5.89 -104.73 -0.62 -7.07 16 9 C -0.06 -1.38 9.47 -39.61 -0.38 -1.75 16 10 C -0.18 -4.29 8.63 -39.27 -0.34 -4.62 16 11 C 0.13 3.25 5.57 -106.80 -0.59 2.66 16 12 C -0.44 -10.91 9.05 -37.74 -0.34 -11.25 16 13 H 0.09 2.02 7.90 -52.49 -0.41 1.60 16 14 C 0.07 1.70 5.15 -17.31 -0.09 1.61 16 15 N -0.77 -18.31 10.95 55.56 0.61 -17.70 16 16 Si 0.91 17.09 29.59 -169.99 -5.03 12.06 16 17 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 18 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 19 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 20 C -0.24 -5.74 9.73 -39.27 -0.38 -6.12 16 21 C -0.02 -0.50 9.52 -39.61 -0.38 -0.88 16 22 H 0.10 0.61 8.14 -51.92 -0.42 0.18 16 23 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.40 5.71 6.47 -40.82 -0.26 5.44 16 30 H 0.09 1.60 6.37 -52.49 -0.33 1.27 16 31 H 0.12 2.93 6.18 -52.48 -0.32 2.61 16 32 H 0.29 6.06 8.29 -40.82 -0.34 5.72 16 33 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 34 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 LS Contribution 307.24 15.07 4.63 4.63 Total: -1.00 -28.39 307.24 -8.63 -37.01 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -4.25 Total: 9.34 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -1.92 Total: -13.95 kcal Atomic # 7 Polarization: -30.57 SS G_CDS: 0.27 Total: -30.30 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Atomic # 16 Polarization: -2.65 SS G_CDS: -2.41 Total: -5.06 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.39 -8.63 -37.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611142625.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.327 kcal (2) G-P(sol) polarization free energy of solvation -28.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds