Wall clock time and date at job start Mon Mar 30 2020 00:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81407 * 102.99858 * 2 1 4 4 C 1.52999 * 109.47168 * 179.97438 * 3 2 1 5 5 N 1.46492 * 109.47134 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00403 * 180.02562 * 5 4 3 7 7 O 1.21592 * 119.99740 * 0.02562 * 6 5 4 8 8 C 1.47639 * 120.00339 * 180.02562 * 6 5 4 9 9 C 1.40007 * 119.89573 * 0.24611 * 8 6 5 10 10 C 1.36318 * 120.10468 * 180.25591 * 9 8 6 11 11 C 1.40884 * 119.89177 * 359.47662 * 10 9 8 12 12 C 1.41116 * 120.10368 * 180.29746 * 11 10 9 13 13 H 1.07997 * 120.00134 * 154.53831 * 12 11 10 14 14 C 1.40227 * 119.99714 * 334.53632 * 12 11 10 15 15 N 1.30644 * 120.00033 * 343.04996 * 14 12 11 16 16 Si 1.86799 * 119.99848 * 163.05218 * 14 12 11 17 17 H 1.48501 * 109.47314 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47265 * 119.99809 * 16 14 12 19 19 H 1.48498 * 109.47305 * 239.99792 * 16 14 12 20 20 C 1.40889 * 119.79628 * 0.27580 * 11 10 9 21 21 C 1.36316 * 119.88883 * 359.97438 * 20 11 10 22 22 H 1.09005 * 109.46588 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46704 * 299.99614 * 1 2 3 24 24 H 1.09002 * 109.47111 * 59.99720 * 1 2 3 25 25 H 1.08997 * 109.46674 * 60.00250 * 3 2 1 26 26 H 1.08995 * 109.47083 * 300.00643 * 3 2 1 27 27 H 1.09000 * 109.46513 * 60.00355 * 4 3 2 28 28 H 1.08994 * 109.47508 * 300.00851 * 4 3 2 29 29 H 0.97005 * 120.00342 * 0.02562 * 5 4 3 30 30 H 1.08000 * 119.95276 * 0.03420 * 9 8 6 31 31 H 1.08007 * 120.05277 * 179.74755 * 10 9 8 32 32 H 0.97005 * 119.99903 * 179.97438 * 15 14 12 33 33 H 1.08002 * 120.05358 * 180.02562 * 20 11 10 34 34 H 1.08002 * 119.94674 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7423 1.9401 0.0006 5 7 4.0718 3.3675 0.0013 6 6 5.3606 3.7616 0.0014 7 8 6.2499 2.9324 0.0005 8 6 5.6927 5.2002 0.0026 9 6 4.6670 6.1531 0.0088 10 6 4.9687 7.4825 0.0047 11 6 6.3152 7.8969 0.0052 12 6 6.6326 9.2719 0.0073 13 1 7.5769 9.6075 0.4099 14 6 5.7219 10.2024 -0.5134 15 7 4.7491 9.8014 -1.2876 16 14 5.9000 12.0153 -0.1000 17 1 7.0737 12.2074 0.7892 18 1 6.0939 12.7916 -1.3510 19 1 4.6735 12.4883 0.5909 20 6 7.3439 6.9342 0.0042 21 6 7.0324 5.6071 0.0032 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8031 2.2371 0.8900 26 1 1.8030 2.2372 -0.8899 27 1 4.1615 1.4704 -0.8892 28 1 4.1609 1.4705 0.8907 29 1 3.3624 4.0291 0.0016 30 1 3.6350 5.8346 0.0133 31 1 4.1767 8.2169 0.0053 32 1 4.1189 10.4451 -1.6475 33 1 8.3776 7.2472 0.0051 34 1 7.8203 4.8684 0.0020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611142625.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:35 Heat of formation + Delta-G solvation = -48.770671 kcal Electronic energy + Delta-G solvation = -16707.348386 eV Core-core repulsion = 13922.761107 eV Total energy + Delta-G solvation = -2784.587280 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.80515 -38.94898 -36.34174 -35.66979 -32.62503 -31.34070 -31.06802 -29.75134 -27.70187 -24.62537 -23.32768 -22.69025 -21.37647 -19.36965 -18.56151 -17.51147 -17.04446 -16.76884 -16.72735 -15.75196 -15.61556 -15.27094 -15.08035 -14.57052 -14.47439 -14.22143 -13.96858 -13.71513 -13.46443 -13.25976 -12.91342 -12.84873 -12.82210 -12.59542 -12.37662 -11.76095 -11.37669 -11.13679 -11.06016 -10.73732 -10.15704 -9.57897 -9.40694 -8.79165 -8.74488 -6.48838 0.42427 0.53613 1.14760 1.39095 1.42409 1.55821 1.59775 2.10705 2.18014 2.48149 2.77769 3.62643 3.68209 3.85510 4.25007 4.31118 4.34562 4.35261 4.37565 4.44367 4.67232 4.81879 4.90269 4.92300 5.03382 5.15163 5.29485 5.45423 5.58864 5.81201 5.93284 5.99176 6.22623 6.53760 6.65716 6.77099 6.88441 7.39284 8.16269 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033220 B = 0.003453 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.674303 B = 8107.471803 C = 8859.184267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.297 6.297 3 C -0.085 4.085 4 C 0.142 3.858 5 N -0.722 5.722 6 C 0.572 3.428 7 O -0.606 6.606 8 C -0.293 4.293 9 C -0.052 4.052 10 C -0.197 4.197 11 C 0.102 3.898 12 C -0.473 4.473 13 H 0.084 0.916 14 C 0.038 3.962 15 N -0.798 5.798 16 Si 0.988 3.012 17 H -0.258 1.258 18 H -0.264 1.264 19 H -0.259 1.259 20 C -0.253 4.253 21 C -0.033 4.033 22 H 0.114 0.886 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.411 0.589 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.297 0.703 33 H 0.104 0.896 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.828 -7.165 1.684 13.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.073 6.073 3 C -0.234 4.234 4 C 0.018 3.982 5 N -0.375 5.375 6 C 0.366 3.634 7 O -0.490 6.490 8 C -0.298 4.298 9 C -0.071 4.071 10 C -0.216 4.216 11 C 0.098 3.902 12 C -0.500 4.500 13 H 0.103 0.897 14 C -0.181 4.181 15 N -0.422 5.422 16 Si 0.808 3.192 17 H -0.182 1.182 18 H -0.189 1.189 19 H -0.184 1.184 20 C -0.273 4.273 21 C -0.052 4.052 22 H 0.133 0.867 23 H 0.108 0.892 24 H 0.107 0.893 25 H 0.123 0.877 26 H 0.121 0.879 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.248 0.752 30 H 0.145 0.855 31 H 0.133 0.867 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.784 -8.568 1.526 13.858 hybrid contribution -0.754 1.912 -0.053 2.056 sum -11.538 -6.656 1.473 13.401 Atomic orbital electron populations 1.23470 0.90228 1.07775 1.06185 1.87170 1.11480 1.10437 1.98258 1.23422 0.97410 0.95355 1.07168 1.20816 0.93592 0.81719 1.02116 1.45678 1.07264 1.07948 1.76649 1.18434 0.82223 0.88622 0.74164 1.90629 1.48503 1.55581 1.54295 1.19148 0.94472 0.91029 1.25142 1.20737 0.97360 0.92691 0.96346 1.21020 0.96588 0.94943 1.09032 1.18153 0.92323 0.93692 0.85983 1.20140 1.03822 0.91754 1.34303 0.89749 1.26911 0.92967 1.06573 0.91650 1.69758 1.12284 1.39740 1.20383 0.85063 0.79926 0.74898 0.79356 1.18163 1.18892 1.18368 1.20873 0.98316 0.92711 1.15367 1.20516 0.95118 0.95195 0.94393 0.86718 0.89210 0.89277 0.87741 0.87878 0.92258 0.92102 0.75175 0.85526 0.86690 0.89169 0.87808 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.76 113.37 1.22 0.01 16 2 S -0.30 -5.86 22.38 -56.49 -1.26 -7.12 16 3 C -0.09 -1.61 6.05 71.98 0.44 -1.17 16 4 C 0.14 3.88 5.68 86.38 0.49 4.37 16 5 N -0.72 -22.63 5.50 -466.18 -2.57 -25.20 16 6 C 0.57 24.09 7.76 86.73 0.67 24.76 16 7 O -0.61 -29.39 16.32 -4.00 -0.07 -29.46 16 8 C -0.29 -13.28 5.89 -19.93 -0.12 -13.40 16 9 C -0.05 -2.24 9.47 22.25 0.21 -2.03 16 10 C -0.20 -9.52 8.63 22.47 0.19 -9.33 16 11 C 0.10 5.24 5.57 -21.28 -0.12 5.12 16 12 C -0.47 -23.68 9.05 23.46 0.21 -23.47 16 13 H 0.08 4.08 7.90 -2.91 -0.02 4.05 16 14 C 0.04 1.74 5.15 85.35 0.44 2.18 16 15 N -0.80 -37.48 10.95 21.87 0.24 -37.24 16 16 Si 0.99 34.30 29.59 68.60 2.03 36.33 16 17 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 18 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 19 H -0.26 -8.55 7.11 99.48 0.71 -7.85 16 20 C -0.25 -12.55 9.73 22.47 0.22 -12.34 16 21 C -0.03 -1.59 9.52 22.25 0.21 -1.37 16 22 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.41 10.62 6.47 -92.70 -0.60 10.02 16 30 H 0.13 4.27 6.37 -2.91 -0.02 4.25 16 31 H 0.12 5.62 6.18 -2.91 -0.02 5.60 16 32 H 0.30 12.31 8.29 -92.70 -0.77 11.54 16 33 H 0.10 4.85 8.06 -2.91 -0.02 4.82 16 34 H 0.10 4.79 7.63 -2.91 -0.02 4.77 16 Total: -1.00 -61.95 307.24 2.96 -59.00 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.51 Total: 30.37 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: 4.07 Total: -26.67 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -2.33 Total: -62.44 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.07 Total: -29.46 kcal Atomic # 14 Polarization: 34.30 SS G_CDS: 2.03 Total: 36.33 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -1.26 Total: -7.12 kcal Total: -61.95 2.96 -59.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611142625.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.227 kcal (2) G-P(sol) polarization free energy of solvation -61.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds