Wall clock time and date at job start Mon Mar 30 2020 00:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46921 * 2 1 4 4 H 1.08997 * 109.47485 * 179.82791 * 3 2 1 5 5 C 1.50702 * 109.47415 * 299.82960 * 3 2 1 6 6 H 1.07994 * 120.00518 * 119.99248 * 5 3 2 7 7 C 1.37885 * 119.99709 * 300.00090 * 5 3 2 8 8 N 1.31516 * 119.99840 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99967 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47158 * 89.99963 * 9 7 5 11 11 H 1.48502 * 109.46946 * 209.99908 * 9 7 5 12 12 H 1.48503 * 109.47200 * 329.99514 * 9 7 5 13 13 N 1.46909 * 109.47141 * 59.82497 * 3 2 1 14 14 C 1.46903 * 110.99437 * 85.93242 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.55277 * 14 13 3 16 16 C 1.30905 * 125.09253 * 89.71994 * 15 14 13 17 17 N 1.37491 * 116.32171 * 179.82622 * 16 15 14 18 18 C 1.38920 * 139.53942 * 180.02562 * 17 16 15 19 19 C 1.34333 * 107.12418 * 180.37393 * 18 17 16 20 20 N 1.33872 * 108.38913 * 359.97438 * 19 18 17 21 21 C 1.32352 * 109.13901 * 0.02562 * 20 19 18 22 22 S 1.75788 * 125.08766 * 270.01964 * 15 14 13 23 23 H 1.08996 * 109.47122 * 55.59397 * 1 2 3 24 24 H 1.08997 * 109.47010 * 295.58770 * 1 2 3 25 25 H 1.08997 * 109.46584 * 175.59384 * 1 2 3 26 26 H 1.09002 * 109.47020 * 119.99787 * 2 1 3 27 27 H 1.08997 * 109.47429 * 240.00339 * 2 1 3 28 28 H 0.96995 * 120.00284 * 179.97438 * 8 7 5 29 29 H 1.00901 * 110.99578 * 209.88285 * 13 3 2 30 30 H 1.08994 * 109.46864 * 295.54442 * 14 13 3 31 31 H 1.08994 * 109.47486 * 55.55129 * 14 13 3 32 32 H 1.07993 * 121.83955 * 0.02562 * 16 15 14 33 33 H 1.08005 * 126.43689 * 0.37061 * 18 17 16 34 34 H 1.08001 * 125.80484 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4426 0.0031 5 6 1.5411 2.1518 -1.2326 6 1 0.9198 3.0298 -1.1362 7 6 1.8778 1.6794 -2.4835 8 7 2.6346 0.6103 -2.6009 9 14 1.2589 2.5581 -4.0113 10 1 2.2377 3.5997 -4.4140 11 1 1.0973 1.5776 -5.1148 12 1 -0.0504 3.1953 -3.7197 13 7 1.5468 2.1363 1.1974 14 6 2.4392 1.9096 2.3420 15 6 1.9630 2.7218 3.5187 16 6 1.1073 2.3106 4.4200 17 7 0.8016 3.2015 5.4217 18 6 0.0086 3.2814 6.5595 19 6 0.1959 4.5024 7.0873 20 7 1.0686 5.1654 6.3185 21 6 1.4383 4.3887 5.3127 22 16 2.4678 4.3659 3.8824 23 1 -0.3633 0.5807 -0.8478 24 1 -0.3633 0.4438 0.9269 25 1 -0.3632 -1.0246 -0.0790 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.8712 0.2778 -3.4808 29 1 1.4286 3.1226 1.0208 30 1 2.4322 0.8516 2.6042 31 1 3.4526 2.2119 2.0782 32 1 0.6681 1.3248 4.3808 33 1 -0.6372 2.5072 6.9469 34 1 -0.2771 4.8843 7.9799 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893605704.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:08 Heat of formation + Delta-G solvation = 95.262715 kcal Electronic energy + Delta-G solvation = -17333.504857 eV Core-core repulsion = 14587.456085 eV Total energy + Delta-G solvation = -2746.048772 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.55666 -37.33193 -35.92871 -33.07257 -31.27792 -30.21937 -29.18479 -26.61865 -24.66316 -23.38224 -23.15084 -21.40161 -20.02721 -19.13525 -18.43416 -16.55583 -16.00089 -15.77203 -15.10917 -14.74346 -14.49417 -14.03528 -13.76239 -13.54948 -13.26131 -12.69160 -12.29151 -11.94269 -11.72580 -11.59676 -11.07813 -10.96952 -10.83055 -10.50379 -10.39652 -10.23208 -10.12926 -9.85014 -9.50133 -8.93734 -8.78875 -8.54999 -7.67468 -7.46727 -6.10423 -4.16404 0.92563 0.98301 1.68491 2.25260 2.58068 2.86430 3.25033 3.32569 3.35990 4.33531 4.41112 4.72770 5.00512 5.12044 5.20618 5.31611 5.38666 5.44249 5.88437 5.94184 6.13331 6.43277 6.46510 6.56994 6.74502 6.80076 7.11040 7.13660 7.36165 7.63356 7.67315 7.68278 7.73341 8.11135 8.22531 8.48607 8.90678 9.48989 10.95439 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033486 B = 0.004383 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.963030 B = 6386.413097 C = 6695.657227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.216 3.784 4 H 0.005 0.995 5 C -0.516 4.516 6 H 0.060 0.940 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.680 5.680 14 C 0.133 3.867 15 C -0.161 4.161 16 C 0.046 3.954 17 N -0.401 5.401 18 C -0.059 4.059 19 C 0.012 3.988 20 N -0.467 5.467 21 C 0.135 3.865 22 S 0.184 5.816 23 H 0.057 0.943 24 H 0.040 0.960 25 H 0.014 0.986 26 H 0.010 0.990 27 H 0.089 0.911 28 H 0.262 0.738 29 H 0.335 0.665 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.183 0.817 33 H 0.181 0.819 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 1.892 14.172 14.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.142 4.142 3 C 0.108 3.892 4 H 0.022 0.978 5 C -0.554 4.554 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.312 5.312 14 C 0.002 3.998 15 C -0.280 4.280 16 C -0.083 4.083 17 N -0.079 5.079 18 C -0.192 4.192 19 C -0.139 4.139 20 N -0.191 5.191 21 C -0.231 4.231 22 S 0.433 5.567 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.033 0.967 26 H 0.029 0.971 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.153 0.847 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.200 0.800 33 H 0.198 0.802 34 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.423 2.891 13.703 14.077 hybrid contribution -0.904 -0.874 -0.501 1.354 sum -2.327 2.017 13.203 13.557 Atomic orbital electron populations 1.21454 0.97450 0.97511 1.01357 1.21453 0.95083 0.98055 0.99605 1.19211 0.93190 0.91527 0.85223 0.97788 1.21146 1.31965 1.12122 0.90172 0.92182 1.24869 0.94927 0.94941 0.98955 1.69868 1.36466 1.22616 1.23684 0.86560 0.79316 0.79356 0.82595 1.20717 1.21200 1.19813 1.60890 1.47917 1.16527 1.05819 1.20452 0.94715 0.97591 0.87074 1.24093 1.03046 0.98734 1.02122 1.20257 1.01458 0.97401 0.89158 1.43901 1.32119 1.12368 1.19510 1.22782 1.03913 1.02346 0.90139 1.22369 0.99222 0.91253 1.01030 1.70578 1.15503 1.29694 1.03350 1.26380 1.04998 0.87322 1.04426 1.84933 1.44904 1.11400 1.15427 0.92395 0.94076 0.96707 0.97142 0.89321 0.92840 0.84727 0.89195 0.93844 0.80045 0.80226 0.79981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 9.52 37.16 0.35 -2.18 16 2 C -0.10 -2.32 5.59 -26.73 -0.15 -2.47 16 3 C 0.22 4.94 2.30 -68.86 -0.16 4.78 16 4 H 0.00 0.11 7.71 -51.93 -0.40 -0.29 16 5 C -0.52 -13.11 7.26 -34.44 -0.25 -13.36 16 6 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 7 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -24.05 11.32 55.43 0.63 -23.42 16 9 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 13 N -0.68 -12.88 5.64 -109.21 -0.62 -13.49 16 14 C 0.13 2.07 6.01 -4.97 -0.03 2.04 16 15 C -0.16 -2.25 5.89 -36.00 -0.21 -2.46 16 16 C 0.05 0.60 11.11 -16.70 -0.19 0.42 16 17 N -0.40 -5.57 3.19 -63.78 -0.20 -5.77 16 18 C -0.06 -0.68 12.04 -15.71 -0.19 -0.87 16 19 C 0.01 0.14 11.82 -18.04 -0.21 -0.07 16 20 N -0.47 -7.36 11.32 -13.56 -0.15 -7.51 16 21 C 0.13 2.08 8.93 -88.71 -0.79 1.29 16 22 S 0.18 2.58 23.35 -107.50 -2.51 0.07 16 23 H 0.06 1.33 7.07 -51.93 -0.37 0.97 16 24 H 0.04 0.81 7.74 -51.93 -0.40 0.41 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.01 0.21 7.61 -51.93 -0.39 -0.19 16 27 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.34 6.44 8.13 -39.29 -0.32 6.12 16 30 H 0.09 1.34 7.61 -51.93 -0.40 0.94 16 31 H 0.04 0.69 7.94 -51.93 -0.41 0.27 16 32 H 0.18 2.00 8.06 -52.49 -0.42 1.57 16 33 H 0.18 1.40 8.06 -52.48 -0.42 0.97 16 34 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 299.56 15.07 4.51 4.51 Total: -1.00 -28.65 299.56 -9.51 -38.17 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.23 Total: 3.25 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -1.92 Total: -11.26 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.34 Total: -50.20 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.51 Total: 0.07 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.65 -9.51 -38.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893605704.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.428 kcal (2) G-P(sol) polarization free energy of solvation -28.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds