Wall clock time and date at job start Mon Mar 30 2020 00:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46921 * 2 1 4 4 H 1.08997 * 109.47485 * 179.82791 * 3 2 1 5 5 C 1.50702 * 109.47415 * 299.82960 * 3 2 1 6 6 H 1.07994 * 120.00518 * 119.99248 * 5 3 2 7 7 C 1.37885 * 119.99709 * 300.00090 * 5 3 2 8 8 N 1.31516 * 119.99840 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99967 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47158 * 89.99963 * 9 7 5 11 11 H 1.48502 * 109.46946 * 209.99908 * 9 7 5 12 12 H 1.48503 * 109.47200 * 329.99514 * 9 7 5 13 13 N 1.46909 * 109.47141 * 59.82497 * 3 2 1 14 14 C 1.46903 * 110.99437 * 85.93242 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.55277 * 14 13 3 16 16 C 1.30905 * 125.09253 * 89.71994 * 15 14 13 17 17 N 1.37491 * 116.32171 * 179.82622 * 16 15 14 18 18 C 1.38920 * 139.53942 * 180.02562 * 17 16 15 19 19 C 1.34333 * 107.12418 * 180.37393 * 18 17 16 20 20 N 1.33872 * 108.38913 * 359.97438 * 19 18 17 21 21 C 1.32352 * 109.13901 * 0.02562 * 20 19 18 22 22 S 1.75788 * 125.08766 * 270.01964 * 15 14 13 23 23 H 1.08996 * 109.47122 * 55.59397 * 1 2 3 24 24 H 1.08997 * 109.47010 * 295.58770 * 1 2 3 25 25 H 1.08997 * 109.46584 * 175.59384 * 1 2 3 26 26 H 1.09002 * 109.47020 * 119.99787 * 2 1 3 27 27 H 1.08997 * 109.47429 * 240.00339 * 2 1 3 28 28 H 0.96995 * 120.00284 * 179.97438 * 8 7 5 29 29 H 1.00901 * 110.99578 * 209.88285 * 13 3 2 30 30 H 1.08994 * 109.46864 * 295.54442 * 14 13 3 31 31 H 1.08994 * 109.47486 * 55.55129 * 14 13 3 32 32 H 1.07993 * 121.83955 * 0.02562 * 16 15 14 33 33 H 1.08005 * 126.43689 * 0.37061 * 18 17 16 34 34 H 1.08001 * 125.80484 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4426 0.0031 5 6 1.5411 2.1518 -1.2326 6 1 0.9198 3.0298 -1.1362 7 6 1.8778 1.6794 -2.4835 8 7 2.6346 0.6103 -2.6009 9 14 1.2589 2.5581 -4.0113 10 1 2.2377 3.5997 -4.4140 11 1 1.0973 1.5776 -5.1148 12 1 -0.0504 3.1953 -3.7197 13 7 1.5468 2.1363 1.1974 14 6 2.4392 1.9096 2.3420 15 6 1.9630 2.7218 3.5187 16 6 1.1073 2.3106 4.4200 17 7 0.8016 3.2015 5.4217 18 6 0.0086 3.2814 6.5595 19 6 0.1959 4.5024 7.0873 20 7 1.0686 5.1654 6.3185 21 6 1.4383 4.3887 5.3127 22 16 2.4678 4.3659 3.8824 23 1 -0.3633 0.5807 -0.8478 24 1 -0.3633 0.4438 0.9269 25 1 -0.3632 -1.0246 -0.0790 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.8712 0.2778 -3.4808 29 1 1.4286 3.1226 1.0208 30 1 2.4322 0.8516 2.6042 31 1 3.4526 2.2119 2.0782 32 1 0.6681 1.3248 4.3808 33 1 -0.6372 2.5072 6.9469 34 1 -0.2771 4.8843 7.9799 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893605704.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:08 Heat of formation + Delta-G solvation = 78.961228 kcal Electronic energy + Delta-G solvation = -17334.211743 eV Core-core repulsion = 14587.456085 eV Total energy + Delta-G solvation = -2746.755658 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.56069 -38.66967 -37.32371 -34.70022 -32.95386 -31.45570 -30.35244 -28.27822 -26.09724 -24.97160 -24.41499 -22.38962 -21.22932 -20.80508 -19.47075 -18.37063 -17.08177 -16.90036 -16.74047 -16.12635 -15.69046 -15.42356 -15.20820 -14.95179 -14.45325 -14.12651 -13.83268 -13.52117 -13.17757 -12.84256 -12.81058 -12.56377 -12.38160 -12.19156 -11.88398 -11.62388 -11.43123 -11.27324 -11.25810 -10.78053 -10.51863 -9.85163 -9.06311 -8.71117 -8.08848 -6.19985 -0.12683 -0.05615 0.64563 1.21845 1.42422 1.45425 1.53711 1.60092 1.90442 2.43924 3.20875 3.38104 3.70067 3.82481 4.01338 4.22143 4.35497 4.52274 4.62811 4.74235 4.77820 4.84417 4.99246 5.14634 5.33538 5.41192 5.52269 5.58661 5.72953 5.83826 5.85644 5.91863 6.31521 6.43667 6.69895 6.74144 6.99725 7.48618 8.95777 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033486 B = 0.004383 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.963030 B = 6386.413097 C = 6695.657227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C 0.221 3.779 4 H -0.026 1.026 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.948 3.052 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.674 5.674 14 C 0.141 3.859 15 C -0.172 4.172 16 C 0.060 3.940 17 N -0.407 5.407 18 C -0.047 4.047 19 C -0.001 4.001 20 N -0.499 5.499 21 C 0.105 3.895 22 S 0.172 5.828 23 H 0.032 0.968 24 H 0.054 0.946 25 H 0.031 0.969 26 H 0.029 0.971 27 H 0.057 0.943 28 H 0.261 0.739 29 H 0.332 0.668 30 H 0.102 0.898 31 H 0.038 0.962 32 H 0.209 0.791 33 H 0.222 0.778 34 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.655 1.456 15.640 16.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.138 4.138 3 C 0.113 3.887 4 H -0.008 1.008 5 C -0.562 4.562 6 H 0.073 0.927 7 C -0.178 4.178 8 N -0.553 5.553 9 Si 0.775 3.225 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.305 5.305 14 C 0.009 3.991 15 C -0.291 4.291 16 C -0.069 4.069 17 N -0.086 5.086 18 C -0.179 4.179 19 C -0.150 4.150 20 N -0.224 5.224 21 C -0.261 4.261 22 S 0.422 5.578 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.149 0.851 30 H 0.120 0.880 31 H 0.056 0.944 32 H 0.225 0.775 33 H 0.238 0.762 34 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.882 2.469 15.192 15.659 hybrid contribution -0.482 -0.719 -0.815 1.189 sum -3.364 1.750 14.377 14.869 Atomic orbital electron populations 1.21322 0.96142 0.98281 1.00886 1.21327 0.96122 0.97380 0.98995 1.18982 0.91293 0.92223 0.86168 1.00821 1.21436 1.31435 1.11972 0.91393 0.92658 1.25525 0.95260 0.95581 1.01451 1.69991 1.37552 1.23745 1.24005 0.85703 0.78826 0.78326 0.79657 1.20501 1.21167 1.19497 1.60788 1.48496 1.15995 1.05222 1.20347 0.93837 0.98565 0.86326 1.23787 1.04414 0.98560 1.02323 1.20587 1.00170 0.97946 0.88155 1.44148 1.32347 1.11931 1.20190 1.23556 1.02781 1.02992 0.88604 1.23054 0.98674 0.91536 1.01760 1.70530 1.16723 1.31004 1.04137 1.26487 1.06189 0.88336 1.05040 1.84880 1.45281 1.11926 1.15720 0.94922 0.92663 0.94967 0.95190 0.92449 0.93022 0.85059 0.88022 0.94360 0.77463 0.76188 0.76726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.42 9.52 71.98 0.69 -3.74 16 2 C -0.10 -4.41 5.59 30.60 0.17 -4.24 16 3 C 0.22 10.18 2.30 44.17 0.10 10.29 16 4 H -0.03 -1.32 7.71 -2.39 -0.02 -1.34 16 5 C -0.52 -26.81 7.26 25.60 0.19 -26.62 16 6 H 0.06 2.82 7.60 -2.91 -0.02 2.80 16 7 C 0.02 1.12 5.30 84.66 0.45 1.57 16 8 N -0.91 -50.20 11.32 21.45 0.24 -49.96 16 9 Si 0.95 42.19 29.54 68.60 2.03 44.21 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 N -0.67 -25.04 5.64 -499.44 -2.82 -27.85 16 14 C 0.14 4.22 6.01 85.56 0.51 4.73 16 15 C -0.17 -4.57 5.89 25.74 0.15 -4.42 16 16 C 0.06 1.42 11.11 83.86 0.93 2.36 16 17 N -0.41 -10.32 3.19 -355.69 -1.13 -11.46 16 18 C -0.05 -0.93 12.04 82.68 1.00 0.07 16 19 C 0.00 -0.03 11.82 83.49 0.99 0.96 16 20 N -0.50 -15.14 11.32 -196.81 -2.23 -17.37 16 21 C 0.10 3.14 8.93 179.68 1.60 4.74 16 22 S 0.17 4.81 23.35 -56.49 -1.32 3.49 16 23 H 0.03 1.46 7.07 -2.39 -0.02 1.45 16 24 H 0.05 2.06 7.74 -2.39 -0.02 2.04 16 25 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.03 1.18 7.61 -2.39 -0.02 1.16 16 27 H 0.06 2.93 6.07 -2.39 -0.01 2.92 16 28 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 29 H 0.33 12.68 8.13 -89.69 -0.73 11.95 16 30 H 0.10 2.81 7.61 -2.39 -0.02 2.80 16 31 H 0.04 1.20 7.94 -2.39 -0.02 1.18 16 32 H 0.21 3.73 8.06 -2.91 -0.02 3.71 16 33 H 0.22 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.22 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -61.76 299.56 1.93 -59.82 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.39 Total: 13.42 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 6.78 Total: -14.31 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -5.93 Total: -106.63 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 4.81 SS G_CDS: -1.32 Total: 3.49 kcal Total: -61.76 1.93 -59.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893605704.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.783 kcal (2) G-P(sol) polarization free energy of solvation -61.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds