Wall clock time and date at job start Mon Mar 30 2020 00:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47247 * 2 1 4 4 C 1.53003 * 109.46853 * 240.00530 * 2 1 3 5 5 C 1.50703 * 109.47537 * 64.99961 * 4 2 1 6 6 H 1.08001 * 119.99234 * 0.02562 * 5 4 2 7 7 C 1.37868 * 120.00087 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00359 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99892 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47084 * 59.99882 * 9 7 5 11 11 H 1.48499 * 109.47333 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47008 * 299.99857 * 9 7 5 13 13 C 1.52993 * 109.47448 * 120.00364 * 2 1 3 14 14 N 1.46899 * 109.47111 * 294.99950 * 13 2 1 15 15 C 1.46905 * 110.99912 * 179.97438 * 14 13 2 16 16 C 1.50697 * 109.46793 * 179.97438 * 15 14 13 17 17 N 1.28714 * 124.72508 * 90.00415 * 16 15 14 18 18 C 1.33527 * 115.75514 * 180.02562 * 17 16 15 19 19 C 1.43205 * 123.13470 * 179.97438 * 18 17 16 20 20 N 8.67862 * 68.22812 * 84.50082 * 2 1 3 21 21 C 1.35187 * 113.73517 * 0.22998 * 18 17 16 22 22 S 1.70774 * 124.73025 * 270.03949 * 16 15 14 23 23 H 1.08996 * 109.46802 * 299.99471 * 1 2 3 24 24 H 1.08995 * 109.46754 * 59.99399 * 1 2 3 25 25 H 1.08993 * 109.46847 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46874 * 185.00087 * 4 2 1 27 27 H 1.09002 * 109.47383 * 304.99840 * 4 2 1 28 28 H 0.96999 * 120.00023 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.47420 * 174.99411 * 13 2 1 30 30 H 1.08999 * 109.46980 * 54.99855 * 13 2 1 31 31 H 1.00900 * 110.99892 * 56.04455 * 14 13 2 32 32 H 1.08997 * 109.47197 * 59.99908 * 15 14 13 33 33 H 1.09003 * 109.46941 * 299.99968 * 15 14 13 34 34 H 1.08000 * 125.58347 * 179.76155 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0572 -2.4767 6 1 1.0807 0.9747 -2.3756 7 6 1.9923 -0.4020 -3.7284 8 7 2.6745 -1.5196 -3.8514 9 14 1.4974 0.5625 -5.2497 10 1 2.0896 1.9230 -5.1876 11 1 1.9925 -0.1374 -6.4623 12 1 0.0175 0.6690 -5.3086 13 6 2.0401 -0.7213 1.2491 14 7 1.6515 0.0373 2.4456 15 6 2.1250 -0.6274 3.6671 16 6 1.7091 0.1784 4.8707 17 7 0.6024 0.0240 5.5096 18 6 0.4161 0.8371 6.5523 19 6 -0.7574 0.8022 7.3723 20 7 -1.6890 0.7724 8.0225 21 6 1.4360 1.7001 6.7584 22 16 2.6399 1.4241 5.5766 23 1 -0.3633 0.5137 0.8900 24 1 -0.3632 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1263 -0.7994 -1.2057 27 1 1.6054 -1.7197 -1.2954 28 1 2.9218 -1.8424 -4.7321 29 1 3.1264 -0.7996 1.2054 30 1 1.6055 -1.7198 1.2950 31 1 0.6530 0.1792 2.4753 32 1 3.2118 -0.7053 3.6404 33 1 1.6906 -1.6251 3.7295 34 1 1.4833 2.4415 7.5423 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897628349.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:11 Heat of formation + Delta-G solvation = 38.815590 kcal Electronic energy + Delta-G solvation = -16445.130553 eV Core-core repulsion = 13696.634050 eV Total energy + Delta-G solvation = -2748.496503 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.10282 -38.46875 -37.56679 -35.76052 -34.04662 -31.89625 -29.15921 -28.18765 -26.74675 -25.75792 -23.90810 -21.81039 -20.63686 -20.22960 -18.49320 -18.06876 -16.92192 -16.65272 -16.37287 -16.08651 -15.47233 -15.15494 -14.68313 -14.43237 -14.24320 -14.18622 -14.06642 -13.77528 -13.38193 -13.16967 -13.04158 -12.72526 -12.65402 -12.52904 -12.19803 -11.90000 -11.45246 -11.05065 -10.99308 -10.81382 -10.67580 -10.48681 -9.90003 -9.40912 -8.13838 -6.22126 -0.53239 0.26678 0.61613 0.81189 1.38691 1.43049 1.44991 1.52566 2.33969 2.45076 2.59056 3.19965 3.20985 3.56991 4.01148 4.17374 4.24247 4.29517 4.41421 4.52191 4.61562 4.80370 4.84346 4.90717 5.09064 5.28670 5.42763 5.52649 5.59624 5.83859 5.94044 6.01332 6.20138 6.33634 6.36050 6.49812 6.94239 7.45964 8.97828 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.037607 B = 0.003087 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.362875 B = 9067.686151 C = 9326.986232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.075 4.075 3 H 0.062 0.938 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.060 0.940 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.957 3.043 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.077 3.923 14 N -0.683 5.683 15 C 0.130 3.870 16 C 0.014 3.986 17 N -0.469 5.469 18 C 0.089 3.911 19 C 0.310 3.690 20 N -0.440 5.440 21 C -0.229 4.229 22 S 0.349 5.651 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.038 0.962 26 H -0.007 1.007 27 H -0.011 1.011 28 H 0.261 0.739 29 H 0.075 0.925 30 H 0.027 0.973 31 H 0.344 0.656 32 H 0.118 0.882 33 H 0.060 0.940 34 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 6.731 21.033 22.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.094 4.094 3 H 0.080 0.920 4 C -0.005 4.005 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.782 3.218 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.195 1.195 13 C -0.052 4.052 14 N -0.315 5.315 15 C -0.002 4.002 16 C -0.265 4.265 17 N -0.185 5.185 18 C -0.047 4.047 19 C -0.008 4.008 20 N -0.118 5.118 21 C -0.375 4.375 22 S 0.607 5.393 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.011 0.989 27 H 0.007 0.993 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.163 0.837 32 H 0.136 0.864 33 H 0.078 0.922 34 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.770 6.992 21.441 22.722 hybrid contribution -1.548 -0.823 -0.766 1.913 sum 1.222 6.169 20.675 21.610 Atomic orbital electron populations 1.21669 0.95628 1.00509 1.00830 1.21016 0.95672 0.99376 0.93344 0.91974 1.19003 0.94564 0.94467 0.92444 1.21638 1.34338 1.08537 0.92181 0.92195 1.25897 0.95365 0.96065 1.02496 1.70081 1.40383 1.22850 1.24254 0.85626 0.78811 0.78922 0.78450 1.19205 1.21165 1.19493 1.21887 1.00593 0.94201 0.88487 1.60619 1.20514 1.49801 1.00609 1.20573 1.02245 0.93885 0.83489 1.26965 0.94269 1.02889 1.02373 1.66812 1.20511 1.24909 1.06236 1.15572 0.92804 0.99767 0.96517 1.24517 0.91522 0.92623 0.92161 1.81291 1.10367 1.08882 1.11237 1.27111 0.98039 1.04747 1.07568 1.82917 1.16090 1.25377 1.14873 0.91922 0.93786 0.94275 0.98865 0.99255 0.93000 0.90694 0.95459 0.83693 0.86377 0.92200 0.76177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 8.78 71.98 0.63 -3.94 16 2 C -0.08 -2.86 2.55 -10.79 -0.03 -2.89 16 3 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.03 1.65 4.45 29.85 0.13 1.78 16 5 C -0.53 -29.19 8.41 25.60 0.22 -28.98 16 6 H 0.06 3.19 7.06 -2.91 -0.02 3.16 16 7 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 8 N -0.93 -56.24 13.29 21.44 0.28 -55.96 16 9 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 C 0.08 2.32 5.14 86.30 0.44 2.76 16 14 N -0.68 -16.34 6.49 -517.94 -3.36 -19.70 16 15 C 0.13 2.40 6.26 85.55 0.54 2.93 16 16 C 0.01 0.24 6.86 88.56 0.61 0.85 16 17 N -0.47 -10.11 10.67 -184.43 -1.97 -12.08 16 18 C 0.09 1.64 6.55 39.43 0.26 1.90 16 19 C 0.31 6.88 15.75 88.33 1.39 8.28 16 20 N -0.44 -11.57 18.54 19.01 0.35 -11.22 16 21 C -0.23 -2.41 10.89 67.12 0.73 -1.68 16 22 S 0.35 3.47 22.92 -56.49 -1.29 2.17 16 23 H 0.06 1.82 6.68 -2.39 -0.02 1.81 16 24 H 0.04 1.71 6.95 -2.39 -0.02 1.69 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 26 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 27 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 28 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 30 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.34 8.53 6.97 -89.69 -0.63 7.90 16 32 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.22 0.75 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -67.89 313.00 1.91 -65.98 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: 0.49 Total: 3.46 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 5.38 Total: -18.57 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -4.69 Total: -98.95 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.29 Total: 2.17 kcal Total: -67.89 1.91 -65.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897628349.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.794 kcal (2) G-P(sol) polarization free energy of solvation -67.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds