Wall clock time and date at job start Mon Mar 30 2020 00:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81402 * 102.99629 * 2 1 4 4 C 1.50698 * 109.46919 * 179.97438 * 3 2 1 5 5 O 1.21284 * 120.00445 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00120 * 179.97438 * 4 3 2 7 7 C 1.39929 * 120.00330 * 185.27166 * 6 4 3 8 8 C 1.38871 * 120.06427 * 33.29173 * 7 6 4 9 9 C 1.38112 * 119.92493 * 180.02562 * 8 7 6 10 10 C 1.38282 * 120.07478 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.93398 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47137 * 89.99687 * 11 10 9 13 13 H 1.08000 * 120.00327 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99965 * 180.27849 * 12 11 10 15 15 N 1.31521 * 120.00072 * 359.71988 * 14 12 11 16 16 Si 1.86807 * 120.00293 * 179.72747 * 14 12 11 17 17 H 1.48499 * 109.46814 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47322 * 119.99684 * 16 14 12 19 19 H 1.48500 * 109.47021 * 239.99886 * 16 14 12 20 20 C 1.38286 * 120.13848 * 0.24863 * 10 9 8 21 21 C 1.38122 * 120.06639 * 359.49448 * 20 10 9 22 22 H 1.09005 * 109.47133 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47607 * 300.00138 * 1 2 3 24 24 H 1.09001 * 109.47382 * 60.00309 * 1 2 3 25 25 H 1.09003 * 109.47222 * 60.00019 * 3 2 1 26 26 H 1.08999 * 109.47256 * 299.99342 * 3 2 1 27 27 H 0.97001 * 119.99823 * 5.28307 * 6 4 3 28 28 H 1.08002 * 120.04284 * 0.02562 * 8 7 6 29 29 H 1.08005 * 119.96508 * 179.97438 * 9 8 7 30 30 H 1.08998 * 109.46787 * 329.99573 * 11 10 9 31 31 H 1.08997 * 109.47216 * 210.00042 * 11 10 9 32 32 H 0.97000 * 119.99850 * 179.97438 * 15 14 12 33 33 H 1.07996 * 119.96599 * 179.74614 * 20 10 9 34 34 H 1.08006 * 120.03084 * 180.25302 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 6 3.7193 1.9374 0.0006 5 8 4.4403 0.9622 0.0006 6 7 4.2573 3.1732 0.0002 7 6 5.6431 3.3330 -0.1105 8 6 6.3881 2.4389 -0.8681 9 6 7.7558 2.5990 -0.9750 10 6 8.3833 3.6479 -0.3283 11 6 9.8758 3.8192 -0.4467 12 6 10.1885 4.6941 -1.6332 13 1 9.3866 5.0871 -2.2406 14 6 11.4985 4.9886 -1.9464 15 7 12.4750 4.5104 -1.2065 16 14 11.8865 6.0668 -3.4217 17 1 10.6211 6.4733 -4.0841 18 1 12.6208 7.2764 -2.9714 19 1 12.7259 5.3073 -4.3828 20 6 7.6449 4.5366 0.4314 21 6 6.2762 4.3850 0.5380 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8030 2.2372 0.8900 26 1 1.8031 2.2371 -0.8900 27 1 3.6840 3.9518 0.0769 28 1 5.8987 1.6192 -1.3732 29 1 8.3359 1.9037 -1.5637 30 1 10.3440 2.8441 -0.5808 31 1 10.2611 4.2855 0.4601 32 1 13.3967 4.7173 -1.4271 33 1 8.1385 5.3524 0.9386 34 1 5.6995 5.0819 1.1282 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928403195.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:38 Heat of formation + Delta-G solvation = -15.370790 kcal Electronic energy + Delta-G solvation = -16680.223060 eV Core-core repulsion = 13897.084108 eV Total energy + Delta-G solvation = -2783.138952 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.33536 -38.17091 -34.94896 -33.07114 -31.26708 -30.33142 -29.81688 -29.03477 -26.43301 -23.33533 -22.42647 -21.01999 -20.04425 -17.83918 -17.09262 -16.35287 -16.25221 -15.89637 -14.98504 -14.48732 -14.29624 -14.22132 -13.98016 -13.81302 -13.19016 -13.00832 -12.84439 -12.52980 -12.49777 -12.01526 -11.38698 -11.28654 -10.84609 -10.60096 -10.39136 -10.29635 -10.14754 -9.89779 -9.45466 -9.26904 -8.42196 -8.30798 -7.96563 -7.41133 -6.03161 -4.07254 1.12666 1.79399 2.04128 2.20140 2.60149 3.03855 3.29749 3.37379 3.42176 4.35438 4.43095 4.54833 4.62189 4.74865 4.76972 4.80539 5.30778 5.32432 5.40461 5.54583 5.89748 6.02025 6.08584 6.18356 6.62652 6.72868 6.86019 7.15163 7.19685 7.40063 7.51921 7.68760 7.86559 7.92706 8.05597 8.32940 8.98345 9.56544 11.06494 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.049082 B = 0.003208 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.334965 B = 8725.477461 C = 8775.231910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.180 6.180 3 C -0.128 4.128 4 C 0.524 3.476 5 O -0.498 6.498 6 N -0.664 5.664 7 C 0.103 3.897 8 C -0.116 4.116 9 C -0.107 4.107 10 C -0.040 4.040 11 C 0.047 3.953 12 C -0.510 4.510 13 H 0.058 0.942 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.108 4.108 21 C -0.142 4.142 22 H 0.104 0.896 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.406 0.594 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.261 0.739 33 H 0.123 0.877 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.595 -2.930 3.254 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.044 5.956 3 C -0.279 4.279 4 C 0.308 3.692 5 O -0.372 6.372 6 N -0.310 5.310 7 C 0.011 3.989 8 C -0.136 4.136 9 C -0.126 4.126 10 C -0.041 4.041 11 C 0.010 3.990 12 C -0.548 4.548 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.127 4.127 21 C -0.162 4.162 22 H 0.123 0.877 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.129 0.871 26 H 0.130 0.870 27 H 0.241 0.759 28 H 0.142 0.858 29 H 0.140 0.860 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.141 0.859 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -22.265 -4.535 3.256 22.954 hybrid contribution -0.957 2.176 -0.755 2.494 sum -23.222 -2.359 2.501 23.475 Atomic orbital electron populations 1.23547 0.95990 1.06805 1.04842 1.87670 1.04358 1.05573 1.97998 1.23506 0.97384 0.99824 1.07201 1.19704 0.88893 0.83504 0.77056 1.90794 1.61602 1.38227 1.46538 1.43250 1.06571 1.08028 1.73119 1.17485 0.81627 0.99034 1.00786 1.20994 0.94347 0.99495 0.98777 1.21007 0.93280 0.98511 0.99780 1.20729 0.99253 0.91879 0.92205 1.18365 0.84816 0.98000 0.97823 1.21098 0.91964 1.30219 1.11559 0.92413 1.25023 0.96350 0.96210 0.96828 1.69973 0.99411 1.45072 1.38842 0.86485 0.78393 0.80242 0.82629 1.19684 1.20961 1.20943 1.20895 0.92370 0.99568 0.99866 1.20730 0.95141 0.99074 1.01243 0.87707 0.90507 0.90481 0.87130 0.86996 0.75919 0.85820 0.85984 0.95229 0.95272 0.92895 0.85933 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 10.76 101.05 1.09 0.26 16 2 S -0.18 -1.87 21.52 -107.50 -2.31 -4.19 16 3 C -0.13 -1.07 6.43 36.00 0.23 -0.84 16 4 C 0.52 6.75 7.59 -10.98 -0.08 6.66 16 5 O -0.50 -8.72 13.55 5.55 0.08 -8.64 16 6 N -0.66 -8.01 5.34 -9.86 -0.05 -8.06 16 7 C 0.10 1.68 6.28 -83.70 -0.53 1.15 16 8 C -0.12 -2.17 8.66 -39.39 -0.34 -2.51 16 9 C -0.11 -2.21 9.69 -39.61 -0.38 -2.59 16 10 C -0.04 -0.88 5.07 -104.59 -0.53 -1.41 16 11 C 0.05 1.21 5.10 -29.04 -0.15 1.06 16 12 C -0.51 -14.30 9.09 -34.44 -0.31 -14.61 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 16 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.11 -2.08 9.69 -39.61 -0.38 -2.46 16 21 C -0.14 -2.28 9.96 -39.39 -0.39 -2.68 16 22 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 23 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 24 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 25 H 0.11 0.64 8.14 -51.92 -0.42 0.21 16 26 H 0.11 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.41 3.22 8.82 -40.82 -0.36 2.86 16 28 H 0.12 2.29 6.41 -52.49 -0.34 1.96 16 29 H 0.12 2.47 8.06 -52.48 -0.42 2.04 16 30 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 31 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 34 H 0.11 1.45 8.06 -52.48 -0.42 1.02 16 LS Contribution 310.66 15.07 4.68 4.68 Total: -1.00 -33.36 310.66 -8.23 -41.59 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -4.46 Total: 0.33 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -1.88 Total: -16.45 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.68 Total: -33.84 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.08 Total: -8.64 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.87 SS G_CDS: -2.31 Total: -4.19 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.36 -8.23 -41.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928403195.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.220 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds