Wall clock time and date at job start Mon Mar 30 2020 00:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81402 * 102.99629 * 2 1 4 4 C 1.50698 * 109.46919 * 179.97438 * 3 2 1 5 5 O 1.21284 * 120.00445 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00120 * 179.97438 * 4 3 2 7 7 C 1.39929 * 120.00330 * 185.27166 * 6 4 3 8 8 C 1.38871 * 120.06427 * 33.29173 * 7 6 4 9 9 C 1.38112 * 119.92493 * 180.02562 * 8 7 6 10 10 C 1.38282 * 120.07478 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.93398 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47137 * 89.99687 * 11 10 9 13 13 H 1.08000 * 120.00327 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99965 * 180.27849 * 12 11 10 15 15 N 1.31521 * 120.00072 * 359.71988 * 14 12 11 16 16 Si 1.86807 * 120.00293 * 179.72747 * 14 12 11 17 17 H 1.48499 * 109.46814 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47322 * 119.99684 * 16 14 12 19 19 H 1.48500 * 109.47021 * 239.99886 * 16 14 12 20 20 C 1.38286 * 120.13848 * 0.24863 * 10 9 8 21 21 C 1.38122 * 120.06639 * 359.49448 * 20 10 9 22 22 H 1.09005 * 109.47133 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47607 * 300.00138 * 1 2 3 24 24 H 1.09001 * 109.47382 * 60.00309 * 1 2 3 25 25 H 1.09003 * 109.47222 * 60.00019 * 3 2 1 26 26 H 1.08999 * 109.47256 * 299.99342 * 3 2 1 27 27 H 0.97001 * 119.99823 * 5.28307 * 6 4 3 28 28 H 1.08002 * 120.04284 * 0.02562 * 8 7 6 29 29 H 1.08005 * 119.96508 * 179.97438 * 9 8 7 30 30 H 1.08998 * 109.46787 * 329.99573 * 11 10 9 31 31 H 1.08997 * 109.47216 * 210.00042 * 11 10 9 32 32 H 0.97000 * 119.99850 * 179.97438 * 15 14 12 33 33 H 1.07996 * 119.96599 * 179.74614 * 20 10 9 34 34 H 1.08006 * 120.03084 * 180.25302 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 6 3.7193 1.9374 0.0006 5 8 4.4403 0.9622 0.0006 6 7 4.2573 3.1732 0.0002 7 6 5.6431 3.3330 -0.1105 8 6 6.3881 2.4389 -0.8681 9 6 7.7558 2.5990 -0.9750 10 6 8.3833 3.6479 -0.3283 11 6 9.8758 3.8192 -0.4467 12 6 10.1885 4.6941 -1.6332 13 1 9.3866 5.0871 -2.2406 14 6 11.4985 4.9886 -1.9464 15 7 12.4750 4.5104 -1.2065 16 14 11.8865 6.0668 -3.4217 17 1 10.6211 6.4733 -4.0841 18 1 12.6208 7.2764 -2.9714 19 1 12.7259 5.3073 -4.3828 20 6 7.6449 4.5366 0.4314 21 6 6.2762 4.3850 0.5380 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8030 2.2372 0.8900 26 1 1.8031 2.2371 -0.8900 27 1 3.6840 3.9518 0.0769 28 1 5.8987 1.6192 -1.3732 29 1 8.3359 1.9037 -1.5637 30 1 10.3440 2.8441 -0.5808 31 1 10.2611 4.2855 0.4601 32 1 13.3967 4.7173 -1.4271 33 1 8.1385 5.3524 0.9386 34 1 5.6995 5.0819 1.1282 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928403195.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:02:38 Heat of formation + Delta-G solvation = -36.622710 kcal Electronic energy + Delta-G solvation = -16681.144613 eV Core-core repulsion = 13897.084108 eV Total energy + Delta-G solvation = -2784.060505 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.51112 -39.57328 -36.32207 -35.00639 -32.66419 -31.80071 -30.97856 -29.59228 -28.15211 -25.15939 -23.88535 -22.42832 -21.38135 -18.96777 -18.50299 -18.16055 -17.20704 -16.86084 -16.74020 -15.95105 -15.70502 -15.32021 -14.67081 -14.60994 -14.49060 -14.46585 -14.27341 -13.76789 -13.51346 -13.28392 -13.21327 -13.03619 -12.63697 -12.45722 -12.04665 -11.66927 -11.54985 -11.19028 -10.91246 -10.87004 -10.60967 -9.78389 -8.91393 -8.69897 -8.18528 -6.33307 0.37522 0.50778 0.55292 1.39726 1.40511 1.51802 1.54689 1.63970 2.05945 2.40186 2.98736 3.10866 3.57568 4.04419 4.07803 4.12934 4.24595 4.37185 4.40295 4.40532 4.59347 4.63812 4.71967 4.94845 5.10182 5.30580 5.32841 5.40242 5.45750 5.58751 5.75383 6.06944 6.10749 6.23474 6.39152 6.79729 7.08922 7.35320 8.89883 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.049082 B = 0.003208 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.334965 B = 8725.477461 C = 8775.231910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.276 6.276 3 C -0.103 4.103 4 C 0.519 3.481 5 O -0.549 6.549 6 N -0.649 5.649 7 C 0.119 3.881 8 C -0.125 4.125 9 C -0.121 4.121 10 C -0.073 4.073 11 C 0.056 3.944 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.968 3.032 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.278 1.278 20 C -0.114 4.114 21 C -0.125 4.125 22 H 0.109 0.891 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.147 0.853 26 H 0.144 0.856 27 H 0.431 0.569 28 H 0.121 0.879 29 H 0.108 0.892 30 H -0.002 1.002 31 H 0.007 0.993 32 H 0.265 0.735 33 H 0.128 0.872 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.153 -0.980 3.140 27.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.052 6.052 3 C -0.254 4.254 4 C 0.307 3.693 5 O -0.426 6.426 6 N -0.296 5.296 7 C 0.025 3.975 8 C -0.145 4.145 9 C -0.140 4.140 10 C -0.074 4.074 11 C 0.019 3.981 12 C -0.564 4.564 13 H 0.074 0.926 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.792 3.208 17 H -0.188 1.188 18 H -0.200 1.200 19 H -0.204 1.204 20 C -0.132 4.132 21 C -0.145 4.145 22 H 0.127 0.873 23 H 0.113 0.887 24 H 0.111 0.889 25 H 0.165 0.835 26 H 0.162 0.838 27 H 0.271 0.729 28 H 0.139 0.861 29 H 0.126 0.874 30 H 0.016 0.984 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.146 0.854 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -25.878 -2.558 3.149 26.194 hybrid contribution 0.008 1.502 -0.663 1.642 sum -25.870 -1.056 2.486 26.011 Atomic orbital electron populations 1.23547 0.91011 1.07677 1.06469 1.88053 1.09913 1.08948 1.98311 1.23425 0.93560 0.97958 1.10416 1.20535 0.90781 0.82678 0.75341 1.90793 1.63283 1.39955 1.48552 1.43147 1.04899 1.09194 1.72402 1.17560 0.83705 0.97621 0.98575 1.20991 0.93534 1.00269 0.99671 1.20912 0.94418 0.98353 1.00335 1.20407 0.97124 0.94337 0.95522 1.18101 0.87926 0.95708 0.96353 1.21408 0.92258 1.30498 1.12203 0.92573 1.25970 0.96123 0.97604 0.99925 1.70099 0.99911 1.46433 1.40743 0.85355 0.78408 0.78347 0.78691 1.18761 1.19962 1.20415 1.21009 0.93921 0.99003 0.99291 1.21054 0.93882 0.99225 1.00301 0.87269 0.88740 0.88867 0.83531 0.83786 0.72928 0.86088 0.87366 0.98389 0.97429 0.92581 0.85422 0.81965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.76 113.37 1.22 0.23 16 2 S -0.28 -5.30 21.52 -56.49 -1.22 -6.52 16 3 C -0.10 -1.33 6.43 71.24 0.46 -0.87 16 4 C 0.52 12.03 7.59 87.66 0.67 12.69 16 5 O -0.55 -18.95 13.55 -3.04 -0.04 -18.99 16 6 N -0.65 -13.22 5.34 -303.51 -1.62 -14.84 16 7 C 0.12 3.61 6.28 38.15 0.24 3.85 16 8 C -0.12 -4.66 8.66 22.39 0.19 -4.46 16 9 C -0.12 -5.24 9.69 22.25 0.22 -5.03 16 10 C -0.07 -3.35 5.07 -19.84 -0.10 -3.45 16 11 C 0.06 3.09 5.10 29.10 0.15 3.24 16 12 C -0.53 -30.49 9.09 25.60 0.23 -30.26 16 13 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 14 C 0.00 0.09 5.46 84.65 0.46 0.56 16 15 N -0.93 -57.04 13.29 21.45 0.28 -56.75 16 16 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 17 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 C -0.11 -4.30 9.69 22.25 0.22 -4.08 16 21 C -0.12 -3.64 9.96 22.39 0.22 -3.42 16 22 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.43 4.52 8.82 -92.71 -0.82 3.70 16 28 H 0.12 4.58 6.41 -2.91 -0.02 4.56 16 29 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 30 H 0.00 -0.13 8.08 -2.39 -0.02 -0.15 16 31 H 0.01 0.43 8.08 -2.39 -0.02 0.41 16 32 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 34 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -77.42 310.66 3.89 -73.53 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 0.29 Total: 7.87 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 4.17 Total: -31.01 kcal Atomic # 7 Polarization: -70.26 SS G_CDS: -1.34 Total: -71.59 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.04 Total: -18.99 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: -5.30 SS G_CDS: -1.22 Total: -6.52 kcal Total: -77.42 3.89 -73.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928403195.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.902 kcal (2) G-P(sol) polarization free energy of solvation -77.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds