Wall clock time and date at job start Mon Mar 30 2020 00:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13589 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40585 * 120.68892 * 263.68253 * 3 2 1 5 5 N 1.38304 * 119.77995 * 359.74785 * 4 3 2 6 6 C 1.36873 * 119.99785 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00643 * 0.02562 * 6 5 4 8 8 C 1.38854 * 119.99927 * 179.97438 * 6 5 4 9 9 N 1.31526 * 119.99845 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00288 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47175 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47224 * 120.00006 * 10 8 6 13 13 H 1.48496 * 109.47195 * 240.00014 * 10 8 6 14 14 N 1.32435 * 120.44205 * 180.02562 * 4 3 2 15 15 C 1.31919 * 122.07294 * 0.02562 * 14 4 3 16 16 C 1.38070 * 121.37210 * 359.97438 * 15 14 4 17 17 C 1.39656 * 119.37438 * 359.97438 * 16 15 14 18 18 C 1.48159 * 120.94051 * 179.97438 * 17 16 15 19 19 C 1.39451 * 120.13149 * 129.74930 * 18 17 16 20 20 C 1.37992 * 119.86577 * 179.74417 * 19 18 17 21 21 C 1.38340 * 120.13047 * 0.53236 * 20 19 18 22 22 C 1.38349 * 120.26704 * 359.71973 * 21 20 19 23 23 C 1.37991 * 120.13114 * 0.02605 * 22 21 20 24 24 H 0.96996 * 119.99723 * 359.97438 * 5 4 3 25 25 H 0.97006 * 119.99889 * 179.97438 * 9 8 6 26 26 H 1.07994 * 119.31472 * 180.02562 * 15 14 4 27 27 H 1.07995 * 120.31399 * 180.02562 * 16 15 14 28 28 H 1.08003 * 120.06401 * 359.97438 * 19 18 17 29 29 H 1.08000 * 119.93568 * 180.24998 * 20 19 18 30 30 H 1.08000 * 119.86646 * 179.74122 * 21 20 19 31 31 H 1.07997 * 119.93274 * 180.02562 * 22 21 20 32 32 H 1.07992 * 120.06560 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2854 0.1340 1.2016 5 7 2.6037 0.2714 2.3971 6 6 3.2977 0.4010 3.5697 7 1 4.3776 0.3964 3.5614 8 6 2.6133 0.5394 4.7699 9 7 1.2981 0.5465 4.7798 10 14 3.5603 0.7170 6.3701 11 1 5.0181 0.6804 6.0893 12 1 3.2125 2.0111 7.0103 13 1 3.2034 -0.3985 7.2830 14 7 4.6097 0.1345 1.1959 15 6 5.3054 0.0125 0.0817 16 6 4.6829 -0.1234 -1.1432 17 6 3.2878 -0.1325 -1.2053 18 6 2.5839 -0.2756 -2.5011 19 6 1.5742 -1.2262 -2.6480 20 6 0.9186 -1.3513 -3.8558 21 6 1.2687 -0.5435 -4.9229 22 6 2.2732 0.3978 -4.7848 23 6 2.9324 0.5357 -3.5804 24 1 1.6337 0.2758 2.4045 25 1 0.8199 0.6428 5.6183 26 1 6.3844 0.0181 0.1288 27 1 5.2693 -0.2225 -2.0446 28 1 1.3034 -1.8607 -1.8170 29 1 0.1337 -2.0844 -3.9696 30 1 0.7557 -0.6479 -5.8675 31 1 2.5419 1.0258 -5.6213 32 1 3.7160 1.2711 -3.4736 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163178190.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:09:39 Heat of formation + Delta-G solvation = 87.387280 kcal Electronic energy + Delta-G solvation = -18240.929944 eV Core-core repulsion = 15359.095716 eV Total energy + Delta-G solvation = -2881.834228 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.77632 -38.52048 -35.75700 -35.52075 -32.95271 -32.15434 -30.84724 -29.52636 -28.83081 -25.13122 -24.04746 -22.76705 -22.12698 -20.54070 -18.56738 -17.79811 -17.23049 -16.24942 -15.57051 -15.10367 -14.69887 -14.50450 -14.02840 -13.77089 -13.58444 -13.27172 -13.06248 -12.66890 -12.48500 -12.35252 -12.04500 -11.84385 -11.46670 -11.35652 -11.09271 -10.95772 -10.63750 -10.58249 -10.47081 -9.36856 -8.97023 -8.83948 -8.55811 -8.25892 -7.27573 -6.84650 -4.01034 1.09731 1.51054 1.75551 2.30170 3.06314 3.07815 3.14405 3.48379 3.83390 3.85418 3.91473 4.53790 4.57997 4.75866 4.96704 5.00300 5.04134 5.11832 5.21169 5.51202 5.54647 5.68066 5.91333 6.02879 6.10146 6.22843 6.27444 6.52034 6.57431 6.60974 6.68787 6.97428 7.08389 7.14426 7.27334 7.62873 8.33607 8.39033 8.72567 8.96872 9.40481 10.29276 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032791 B = 0.004884 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.696651 B = 5731.787349 C = 6416.623577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.273 3.727 3 C -0.208 4.208 4 C 0.374 3.626 5 N -0.499 5.499 6 C -0.286 4.286 7 H 0.124 0.876 8 C 0.020 3.980 9 N -0.874 5.874 10 Si 0.943 3.057 11 H -0.261 1.261 12 H -0.277 1.277 13 H -0.277 1.277 14 N -0.536 5.536 15 C 0.191 3.809 16 C -0.298 4.298 17 C 0.095 3.905 18 C -0.044 4.044 19 C -0.097 4.097 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.099 4.099 24 H 0.409 0.591 25 H 0.282 0.718 26 H 0.146 0.854 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.026 -1.404 -12.824 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.038 4.038 3 C -0.223 4.223 4 C 0.126 3.874 5 N -0.098 5.098 6 C -0.417 4.417 7 H 0.142 0.858 8 C -0.186 4.186 9 N -0.508 5.508 10 Si 0.768 3.232 11 H -0.184 1.184 12 H -0.203 1.203 13 H -0.202 1.202 14 N -0.253 5.253 15 C 0.020 3.980 16 C -0.324 4.324 17 C 0.086 3.914 18 C -0.044 4.044 19 C -0.116 4.116 20 C -0.139 4.139 21 C -0.140 4.140 22 C -0.143 4.143 23 C -0.117 4.117 24 H 0.246 0.754 25 H 0.092 0.908 26 H 0.163 0.837 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.415 -1.244 -11.409 11.974 hybrid contribution -0.195 -0.010 0.020 0.197 sum 3.220 -1.254 -11.389 11.902 Atomic orbital electron populations 1.81125 1.12067 1.13465 1.07760 1.25480 0.92495 0.92527 0.93331 1.15795 0.84256 1.28584 0.93700 1.17744 0.88081 0.97206 0.84414 1.41150 1.08749 1.56650 1.03283 1.20249 0.94275 1.44724 0.82449 0.85797 1.25631 0.95871 0.96309 1.00800 1.69692 1.06700 1.44881 1.29518 0.85573 0.79793 0.78187 0.79599 1.18441 1.20254 1.20248 1.67172 1.05659 1.22149 1.30337 1.22266 0.98978 0.89661 0.87099 1.21176 0.92479 1.19670 0.99095 1.18536 0.92812 0.90917 0.89178 1.18889 0.96057 0.96562 0.92920 1.21295 0.94806 0.97867 0.97594 1.21053 0.99825 0.99833 0.93158 1.21165 0.97862 0.96361 0.98643 1.21053 0.96926 0.98846 0.97439 1.21238 0.99651 0.98809 0.91999 0.75439 0.90793 0.83709 0.86120 0.86101 0.86147 0.86330 0.86029 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.49 18.54 41.83 0.78 -9.71 16 2 C 0.27 5.91 11.68 -22.47 -0.26 5.65 16 3 C -0.21 -4.30 5.79 -106.03 -0.61 -4.91 16 4 C 0.37 8.42 7.44 -155.12 -1.15 7.27 16 5 N -0.50 -12.42 5.33 -10.96 -0.06 -12.48 16 6 C -0.29 -7.25 9.70 -15.07 -0.15 -7.40 16 7 H 0.12 3.09 7.07 -52.49 -0.37 2.72 16 8 C 0.02 0.50 5.50 -17.45 -0.10 0.41 16 9 N -0.87 -22.96 13.05 55.49 0.72 -22.24 16 10 Si 0.94 19.21 29.55 -169.99 -5.02 14.19 16 11 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 12 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 13 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 14 N -0.54 -11.24 9.05 -12.24 -0.11 -11.35 16 15 C 0.19 3.19 11.15 -17.58 -0.20 2.99 16 16 C -0.30 -4.68 9.63 -39.11 -0.38 -5.05 16 17 C 0.10 1.68 5.52 -104.24 -0.58 1.11 16 18 C -0.04 -0.70 5.16 -104.92 -0.54 -1.24 16 19 C -0.10 -1.52 8.53 -39.22 -0.33 -1.86 16 20 C -0.12 -1.60 10.03 -39.63 -0.40 -2.00 16 21 C -0.12 -1.43 10.04 -39.50 -0.40 -1.83 16 22 C -0.12 -1.46 10.03 -39.63 -0.40 -1.86 16 23 C -0.10 -1.33 9.55 -39.22 -0.37 -1.70 16 24 H 0.41 10.59 6.73 -40.82 -0.27 10.31 16 25 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 28 H 0.12 1.99 7.37 -52.48 -0.39 1.61 16 29 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 294.41 15.07 4.44 4.44 Total: -1.00 -27.83 294.41 -7.82 -35.65 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -2.70 Total: 11.92 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -5.86 Total: -10.42 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 1.33 Total: -55.78 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.83 -7.82 -35.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163178190.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.042 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds