Wall clock time and date at job start Mon Mar 30 2020 00:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13589 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40585 * 120.68892 * 263.68253 * 3 2 1 5 5 N 1.38304 * 119.77995 * 359.74785 * 4 3 2 6 6 C 1.36873 * 119.99785 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00643 * 0.02562 * 6 5 4 8 8 C 1.38854 * 119.99927 * 179.97438 * 6 5 4 9 9 N 1.31526 * 119.99845 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00288 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47175 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47224 * 120.00006 * 10 8 6 13 13 H 1.48496 * 109.47195 * 240.00014 * 10 8 6 14 14 N 1.32435 * 120.44205 * 180.02562 * 4 3 2 15 15 C 1.31919 * 122.07294 * 0.02562 * 14 4 3 16 16 C 1.38070 * 121.37210 * 359.97438 * 15 14 4 17 17 C 1.39656 * 119.37438 * 359.97438 * 16 15 14 18 18 C 1.48159 * 120.94051 * 179.97438 * 17 16 15 19 19 C 1.39451 * 120.13149 * 129.74930 * 18 17 16 20 20 C 1.37992 * 119.86577 * 179.74417 * 19 18 17 21 21 C 1.38340 * 120.13047 * 0.53236 * 20 19 18 22 22 C 1.38349 * 120.26704 * 359.71973 * 21 20 19 23 23 C 1.37991 * 120.13114 * 0.02605 * 22 21 20 24 24 H 0.96996 * 119.99723 * 359.97438 * 5 4 3 25 25 H 0.97006 * 119.99889 * 179.97438 * 9 8 6 26 26 H 1.07994 * 119.31472 * 180.02562 * 15 14 4 27 27 H 1.07995 * 120.31399 * 180.02562 * 16 15 14 28 28 H 1.08003 * 120.06401 * 359.97438 * 19 18 17 29 29 H 1.08000 * 119.93568 * 180.24998 * 20 19 18 30 30 H 1.08000 * 119.86646 * 179.74122 * 21 20 19 31 31 H 1.07997 * 119.93274 * 180.02562 * 22 21 20 32 32 H 1.07992 * 120.06560 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2854 0.1340 1.2016 5 7 2.6037 0.2714 2.3971 6 6 3.2977 0.4010 3.5697 7 1 4.3776 0.3964 3.5614 8 6 2.6133 0.5394 4.7699 9 7 1.2981 0.5465 4.7798 10 14 3.5603 0.7170 6.3701 11 1 5.0181 0.6804 6.0893 12 1 3.2125 2.0111 7.0103 13 1 3.2034 -0.3985 7.2830 14 7 4.6097 0.1345 1.1959 15 6 5.3054 0.0125 0.0817 16 6 4.6829 -0.1234 -1.1432 17 6 3.2878 -0.1325 -1.2053 18 6 2.5839 -0.2756 -2.5011 19 6 1.5742 -1.2262 -2.6480 20 6 0.9186 -1.3513 -3.8558 21 6 1.2687 -0.5435 -4.9229 22 6 2.2732 0.3978 -4.7848 23 6 2.9324 0.5357 -3.5804 24 1 1.6337 0.2758 2.4045 25 1 0.8199 0.6428 5.6183 26 1 6.3844 0.0181 0.1288 27 1 5.2693 -0.2225 -2.0446 28 1 1.3034 -1.8607 -1.8170 29 1 0.1337 -2.0844 -3.9696 30 1 0.7557 -0.6479 -5.8675 31 1 2.5419 1.0258 -5.6213 32 1 3.7160 1.2711 -3.4736 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163178190.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:09:38 Heat of formation + Delta-G solvation = 72.840327 kcal Electronic energy + Delta-G solvation = -18241.560747 eV Core-core repulsion = 15359.095716 eV Total energy + Delta-G solvation = -2882.465031 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.23880 -39.72702 -37.46192 -37.17365 -34.39449 -33.81913 -31.88303 -30.94607 -30.27530 -26.86129 -25.49074 -24.09878 -23.23739 -21.88815 -20.29573 -19.34909 -18.67146 -17.44201 -17.18809 -16.44285 -16.04949 -15.85752 -15.39940 -15.33581 -15.14159 -14.52982 -14.34196 -14.07588 -13.90316 -13.79396 -13.60827 -13.52993 -13.09327 -12.83083 -12.46593 -12.23717 -12.11395 -12.04790 -11.94617 -10.84438 -10.60998 -10.11909 -9.85698 -9.48974 -8.92156 -8.61002 -5.89577 -0.20239 0.35599 0.49074 0.90106 1.41615 1.47933 1.58020 1.76209 2.16637 2.21460 2.79672 2.87519 2.95581 3.20673 3.39676 3.58416 4.00695 4.10437 4.15592 4.28805 4.47012 4.55194 4.59358 4.70615 4.83078 4.94765 5.12544 5.21362 5.33725 5.38802 5.54121 5.59006 5.61900 5.70717 6.02845 6.08270 6.57944 6.63991 7.02196 7.24616 7.70786 8.56023 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032791 B = 0.004884 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.696651 B = 5731.787349 C = 6416.623577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.282 3.718 3 C -0.227 4.227 4 C 0.383 3.617 5 N -0.539 5.539 6 C -0.307 4.307 7 H 0.121 0.879 8 C -0.030 4.030 9 N -0.927 5.927 10 Si 1.009 2.991 11 H -0.251 1.251 12 H -0.276 1.276 13 H -0.276 1.276 14 N -0.566 5.566 15 C 0.194 3.806 16 C -0.264 4.264 17 C 0.096 3.904 18 C -0.072 4.072 19 C -0.120 4.120 20 C -0.130 4.130 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.099 4.099 24 H 0.396 0.604 25 H 0.280 0.720 26 H 0.194 0.806 27 H 0.166 0.834 28 H 0.097 0.903 29 H 0.134 0.866 30 H 0.152 0.848 31 H 0.158 0.842 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.503 -1.116 -16.476 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.029 4.029 3 C -0.243 4.243 4 C 0.137 3.863 5 N -0.142 5.142 6 C -0.437 4.437 7 H 0.139 0.861 8 C -0.230 4.230 9 N -0.564 5.564 10 Si 0.831 3.169 11 H -0.174 1.174 12 H -0.202 1.202 13 H -0.202 1.202 14 N -0.285 5.285 15 C 0.026 3.974 16 C -0.289 4.289 17 C 0.086 3.914 18 C -0.072 4.072 19 C -0.138 4.138 20 C -0.148 4.148 21 C -0.132 4.132 22 C -0.137 4.137 23 C -0.117 4.117 24 H 0.230 0.770 25 H 0.089 0.911 26 H 0.210 0.790 27 H 0.184 0.816 28 H 0.115 0.885 29 H 0.152 0.848 30 H 0.170 0.830 31 H 0.176 0.824 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.976 -0.968 -15.143 16.308 hybrid contribution -0.806 -0.170 0.563 0.998 sum 5.170 -1.138 -14.579 15.511 Atomic orbital electron populations 1.81090 1.12819 1.14449 1.08729 1.25724 0.92825 0.91824 0.92483 1.16107 0.83898 1.29640 0.94606 1.18185 0.89055 0.94673 0.84365 1.41121 1.08000 1.61111 1.03951 1.20324 0.94107 1.45996 0.83237 0.86148 1.26482 0.96573 0.96305 1.03632 1.69803 1.08170 1.48627 1.29841 0.84610 0.78799 0.77835 0.75617 1.17443 1.20185 1.20200 1.67272 1.04937 1.23599 1.32677 1.23174 1.01038 0.86910 0.86230 1.21772 0.91802 1.14851 1.00448 1.18918 0.93791 0.89545 0.89108 1.18886 0.97186 0.98309 0.92819 1.21261 0.95938 0.98513 0.98113 1.21307 0.99996 1.00694 0.92845 1.21608 0.97346 0.95025 0.99233 1.21501 0.95865 0.98573 0.97742 1.21501 1.00163 0.98329 0.91721 0.76951 0.91111 0.78970 0.81606 0.88496 0.84777 0.83025 0.82411 0.83517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -23.15 18.54 19.00 0.35 -22.80 16 2 C 0.28 12.70 11.68 88.33 1.03 13.74 16 3 C -0.23 -9.49 5.79 -20.78 -0.12 -9.61 16 4 C 0.38 17.61 7.44 133.65 0.99 18.61 16 5 N -0.54 -28.33 5.33 -188.58 -1.01 -29.34 16 6 C -0.31 -16.34 9.70 84.05 0.82 -15.52 16 7 H 0.12 6.24 7.07 -2.91 -0.02 6.22 16 8 C -0.03 -1.57 5.50 84.89 0.47 -1.11 16 9 N -0.93 -52.02 13.05 21.65 0.28 -51.74 16 10 Si 1.01 41.09 29.55 68.60 2.03 43.12 16 11 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 12 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 13 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 14 N -0.57 -23.24 9.05 -192.62 -1.74 -24.98 16 15 C 0.19 5.75 11.15 84.64 0.94 6.69 16 16 C -0.26 -7.15 9.63 22.57 0.22 -6.93 16 17 C 0.10 3.21 5.52 -19.62 -0.11 3.10 16 18 C -0.07 -2.12 5.16 -20.06 -0.10 -2.23 16 19 C -0.12 -3.65 8.53 22.50 0.19 -3.46 16 20 C -0.13 -3.19 10.03 22.24 0.22 -2.96 16 21 C -0.11 -2.20 10.04 22.32 0.22 -1.97 16 22 C -0.12 -2.20 10.03 22.24 0.22 -1.97 16 23 C -0.10 -2.25 9.55 22.50 0.21 -2.04 16 24 H 0.40 22.11 6.73 -92.71 -0.62 21.49 16 25 H 0.28 14.69 8.31 -92.70 -0.77 13.92 16 26 H 0.19 3.86 8.06 -2.91 -0.02 3.84 16 27 H 0.17 3.13 8.06 -2.91 -0.02 3.10 16 28 H 0.10 3.32 7.37 -2.91 -0.02 3.30 16 29 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 30 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 32 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -65.66 294.41 5.67 -59.99 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.54 Total: 31.40 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 5.21 Total: -5.66 kcal Atomic # 7 Polarization: -126.74 SS G_CDS: -2.11 Total: -128.85 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -65.66 5.67 -59.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163178190.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.833 kcal (2) G-P(sol) polarization free energy of solvation -65.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds