Wall clock time and date at job start Mon Mar 30 2020 00:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00099 * 2 1 4 4 H 1.48500 * 109.46985 * 240.00225 * 3 2 1 5 5 H 1.48498 * 109.47162 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47135 * 120.00296 * 3 2 1 7 7 C 1.37879 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99969 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99922 * 359.97438 * 7 2 1 10 10 N 1.46908 * 109.47200 * 180.02562 * 9 7 2 11 11 C 1.46894 * 111.00039 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.67692 * 325.51061 * 11 10 9 13 13 C 1.53331 * 109.67661 * 205.00095 * 11 10 9 14 14 C 1.52734 * 108.40682 * 170.38342 * 13 11 10 15 15 C 1.50716 * 110.53469 * 51.13736 * 14 13 11 16 16 C 1.38895 * 117.72457 * 162.50979 * 15 14 13 17 17 C 1.38043 * 120.53564 * 179.45472 * 16 15 14 18 18 Cl 1.73603 * 120.12751 * 179.97438 * 17 16 15 19 19 C 1.38376 * 119.74306 * 0.02562 * 17 16 15 20 20 C 1.37912 * 119.75933 * 0.12331 * 19 17 16 21 21 C 1.37672 * 122.57705 * 342.19937 * 15 14 13 22 22 C 1.50638 * 122.56268 * 0.70731 * 21 15 14 23 23 H 0.97002 * 119.99770 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47335 * 60.00459 * 9 7 2 25 25 H 1.08998 * 109.47992 * 300.00254 * 9 7 2 26 26 H 1.00901 * 110.99864 * 303.95855 * 10 9 7 27 27 H 1.09002 * 109.68383 * 290.12463 * 13 11 10 28 28 H 1.08999 * 109.68429 * 50.64341 * 13 11 10 29 29 H 1.09003 * 109.25815 * 171.46056 * 14 13 11 30 30 H 1.08999 * 109.25628 * 290.89684 * 14 13 11 31 31 H 1.08000 * 119.72695 * 359.47646 * 16 15 14 32 32 H 1.08008 * 120.12400 * 180.14976 * 19 17 16 33 33 H 1.08004 * 119.71732 * 179.97438 * 20 19 17 34 34 H 1.08998 * 109.25459 * 221.98974 * 22 21 15 35 35 H 1.08992 * 109.21783 * 102.54652 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5052 -4.9070 -0.0011 12 1 0.5864 -4.8265 0.5798 13 6 2.4091 -5.9849 0.6090 14 6 1.5787 -7.2499 0.8164 15 6 0.8521 -7.6190 -0.4514 16 6 0.3596 -8.9131 -0.5605 17 6 -0.3249 -9.3101 -1.6917 18 17 -0.9354 -10.9304 -1.8171 19 6 -0.5215 -8.4118 -2.7256 20 6 -0.0302 -7.1275 -2.6195 21 6 0.6601 -6.7270 -1.4823 22 6 1.1737 -5.3117 -1.4360 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5572 0.8896 26 1 2.8405 -3.5487 -0.7819 27 1 3.2370 -6.1960 -0.0678 28 1 2.7971 -5.6393 1.5672 29 1 2.2373 -8.0688 1.1058 30 1 0.8516 -7.0766 1.6097 31 1 0.5131 -9.6144 0.2465 32 1 -1.0583 -8.7151 -3.6125 33 1 -0.1837 -6.4270 -3.4271 34 1 0.4122 -4.6398 -1.8321 35 1 2.0727 -5.2361 -2.0476 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171092419.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:04 Heat of formation + Delta-G solvation = -20.645683 kcal Electronic energy + Delta-G solvation = -17177.179943 eV Core-core repulsion = 14391.768548 eV Total energy + Delta-G solvation = -2785.411395 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.14621 -38.42502 -37.29599 -35.50437 -34.17524 -33.05684 -30.80231 -29.61914 -27.60570 -24.78455 -23.77876 -23.27934 -22.75097 -20.55720 -18.50712 -17.65340 -16.95296 -16.78863 -16.37582 -15.66802 -15.45021 -15.12360 -15.00126 -14.46559 -14.27950 -14.21884 -13.83547 -13.43482 -13.17125 -13.06680 -12.87390 -12.68514 -12.61657 -12.17545 -12.04593 -11.89135 -11.84453 -11.65613 -11.42427 -11.14783 -10.65215 -9.80310 -9.44915 -9.06837 -8.21647 -6.32887 0.14701 0.28560 1.13172 1.41970 1.45334 1.53281 2.40673 2.58268 3.11678 3.46414 3.64892 3.84298 3.90971 3.97912 4.16047 4.17296 4.25774 4.49272 4.60616 4.65729 4.72895 4.83296 4.91187 4.96786 5.06181 5.09418 5.21680 5.26196 5.29012 5.38977 5.43156 5.62594 5.63976 5.84692 6.04073 6.47256 6.74766 6.91754 7.38257 8.89543 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.044806 B = 0.003510 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.768799 B = 7974.487861 C = 8332.239403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.211 3.789 10 N -0.681 5.681 11 C 0.086 3.914 12 H 0.052 0.948 13 C -0.098 4.098 14 C -0.075 4.075 15 C -0.069 4.069 16 C -0.112 4.112 17 C -0.046 4.046 18 Cl -0.070 7.070 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.075 4.075 22 C -0.102 4.102 23 H 0.265 0.735 24 H -0.036 1.036 25 H -0.005 1.005 26 H 0.336 0.664 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.138 0.862 34 H 0.056 0.944 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.143 -19.934 -3.567 20.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.083 3.917 10 N -0.310 5.310 11 C -0.025 4.025 12 H 0.070 0.930 13 C -0.136 4.136 14 C -0.112 4.112 15 C -0.069 4.069 16 C -0.131 4.131 17 C -0.072 4.072 18 Cl -0.041 7.041 19 C -0.135 4.135 20 C -0.133 4.133 21 C -0.076 4.076 22 C -0.141 4.141 23 H 0.073 0.927 24 H -0.019 1.019 25 H 0.013 0.987 26 H 0.154 0.846 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.156 0.844 34 H 0.074 0.926 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.027 -19.940 -2.880 20.173 hybrid contribution -0.543 0.942 -1.039 1.504 sum 0.484 -18.998 -3.918 19.404 Atomic orbital electron populations 1.70087 1.07822 1.28023 1.51524 1.25950 0.95760 1.03379 0.94613 0.85399 0.78110 0.77682 0.79192 1.19014 1.20929 1.19337 1.21549 0.93866 0.91496 1.50598 0.91655 1.19189 0.90616 0.88849 0.93057 1.60687 1.19965 1.01178 1.49193 1.21597 0.96581 0.89975 0.94328 0.92964 1.21479 0.97524 0.92942 1.01694 1.20543 0.98694 0.98337 0.93667 1.19805 0.98371 0.92516 0.96210 1.21219 0.98147 0.96245 0.97482 1.20932 1.02025 0.86972 0.97315 1.98358 1.86519 1.21081 1.98163 1.21138 1.00809 0.92634 0.98912 1.21336 0.97774 0.96210 0.98023 1.19793 0.98132 0.95260 0.94437 1.21156 1.01250 0.92605 0.99050 0.92661 1.01882 0.98673 0.84632 0.91183 0.90781 0.87885 0.90046 0.83264 0.83396 0.84398 0.92567 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.97 44.07 29.54 68.60 2.03 46.09 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.54 -30.47 9.32 25.60 0.24 -30.23 16 8 H 0.07 3.58 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.21 5.25 85.55 0.45 11.66 16 10 N -0.68 -28.53 6.26 -495.47 -3.10 -31.63 16 11 C 0.09 2.92 2.49 44.94 0.11 3.03 16 12 H 0.05 2.00 7.76 -2.39 -0.02 1.98 16 13 C -0.10 -2.60 5.59 30.62 0.17 -2.43 16 14 C -0.08 -1.61 5.68 29.76 0.17 -1.44 16 15 C -0.07 -1.63 5.74 -19.84 -0.11 -1.74 16 16 C -0.11 -2.36 9.40 22.38 0.21 -2.15 16 17 C -0.05 -0.98 6.31 22.26 0.14 -0.84 16 18 Cl -0.07 -1.32 28.96 -2.72 -0.08 -1.40 16 19 C -0.12 -2.46 9.84 22.23 0.22 -2.24 16 20 C -0.12 -2.73 9.61 22.36 0.21 -2.51 16 21 C -0.08 -2.00 5.74 -19.85 -0.11 -2.11 16 22 C -0.10 -3.11 4.99 29.74 0.15 -2.96 16 23 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 24 H -0.04 -2.07 7.71 -2.39 -0.02 -2.09 16 25 H 0.00 -0.29 8.06 -2.39 -0.02 -0.31 16 26 H 0.34 13.24 8.32 -89.69 -0.75 12.50 16 27 H 0.07 1.73 8.10 -2.39 -0.02 1.71 16 28 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.10 1.67 8.13 -2.39 -0.02 1.65 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.15 2.48 8.05 -2.91 -0.02 2.46 16 32 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 33 H 0.14 2.93 8.05 -2.91 -0.02 2.91 16 34 H 0.06 1.94 7.74 -2.39 -0.02 1.92 16 35 H 0.08 2.41 7.93 -2.39 -0.02 2.40 16 Total: -1.00 -62.95 305.09 1.78 -61.18 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.34 Total: 15.44 kcal Atomic # 6 Polarization: -35.74 SS G_CDS: 2.31 Total: -33.44 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -2.82 Total: -87.87 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -62.95 1.78 -61.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171092419.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.530 kcal (2) G-P(sol) polarization free energy of solvation -62.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds