Wall clock time and date at job start Mon Mar 30 2020 00:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 N 1.32888 * 119.81514 * 12.89191 * 3 2 1 5 5 C 1.31467 * 121.69719 * 180.31730 * 4 3 2 6 6 C 1.38701 * 121.12788 * 359.67598 * 5 4 3 7 7 C 1.38315 * 119.49934 * 0.02589 * 6 5 4 8 8 C 1.39480 * 118.43393 * 359.97438 * 7 6 5 9 9 N 1.38981 * 120.56572 * 179.97438 * 8 7 6 10 10 C 1.38703 * 120.00184 * 3.01471 * 9 8 7 11 11 C 1.38795 * 120.29849 * 42.09950 * 10 9 8 12 12 C 1.38129 * 120.02673 * 179.97438 * 11 10 9 13 13 C 1.38929 * 120.62988 * 0.02562 * 12 11 10 14 14 C 1.36426 * 120.60509 * 0.02562 * 13 12 11 15 15 C 1.40741 * 119.95353 * 359.97438 * 14 13 12 16 16 C 1.41018 * 120.31179 * 179.97438 * 15 14 13 17 17 H 1.07993 * 119.99875 * 209.13238 * 16 15 14 18 18 C 1.39917 * 119.99499 * 29.12944 * 16 15 14 19 19 N 1.30876 * 120.00480 * 26.34738 * 18 16 15 20 20 Si 1.86804 * 119.99486 * 206.34419 * 18 16 15 21 21 H 1.48495 * 109.47215 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47022 * 120.00244 * 20 18 16 23 23 H 1.48502 * 109.47204 * 240.00143 * 20 18 16 24 24 H 1.07997 * 119.43195 * 179.70691 * 5 4 3 25 25 H 1.08004 * 120.25060 * 180.02562 * 6 5 4 26 26 H 1.08001 * 120.78681 * 180.02562 * 7 6 5 27 27 H 0.97003 * 119.99495 * 183.01762 * 9 8 7 28 28 H 1.07997 * 119.99173 * 0.25671 * 11 10 9 29 29 H 1.07996 * 119.68851 * 179.97438 * 12 11 10 30 30 H 1.08001 * 119.69802 * 179.97438 * 13 12 11 31 31 H 1.07998 * 120.02515 * 180.02562 * 14 13 12 32 32 H 0.97002 * 120.00029 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2292 -1.1230 -0.2572 5 6 4.5432 -1.1659 -0.2608 6 6 5.2983 -0.0318 -0.0012 7 6 4.6593 1.1653 0.2667 8 6 3.2647 1.1885 0.2655 9 7 2.5772 2.3672 0.5296 10 6 3.2770 3.5470 0.7356 11 6 4.3640 3.8656 -0.0664 12 6 5.0564 5.0422 0.1434 13 6 4.6766 5.9165 1.1540 14 6 3.6128 5.6285 1.9582 15 6 2.8895 4.4365 1.7665 16 6 1.7890 4.1309 2.5937 17 1 1.5315 3.1009 2.7912 18 6 1.0308 5.1624 3.1584 19 7 0.9716 6.3294 2.5690 20 14 0.1027 4.8736 4.7537 21 1 0.3318 3.4807 5.2144 22 1 0.5882 5.8226 5.7875 23 1 -1.3492 5.0882 4.5275 24 1 5.0431 -2.1000 -0.4700 25 1 6.3771 -0.0830 -0.0082 26 1 5.2268 2.0612 0.4713 27 1 1.6081 2.3647 0.5698 28 1 4.6658 3.1955 -0.8578 29 1 5.9017 5.2845 -0.4837 30 1 5.2290 6.8322 1.3050 31 1 3.3255 6.3150 2.7407 32 1 0.4457 7.0444 2.9603 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210147281.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:12:32 Heat of formation + Delta-G solvation = 89.877165 kcal Electronic energy + Delta-G solvation = -18591.510674 eV Core-core repulsion = 15709.784415 eV Total energy + Delta-G solvation = -2881.726259 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31107 -38.21167 -36.19672 -35.26098 -33.91027 -32.00041 -30.59463 -29.74728 -28.01517 -25.43042 -24.47294 -22.86790 -21.36150 -20.36444 -19.03374 -17.57477 -17.31590 -16.61746 -15.50536 -15.21117 -14.94691 -14.56585 -14.29407 -13.70769 -13.30884 -13.02420 -12.91826 -12.66027 -12.48575 -12.39037 -12.02823 -11.90047 -11.50435 -11.49332 -11.20073 -10.78199 -10.63417 -10.06873 -9.87512 -9.45066 -9.31865 -9.27776 -8.17564 -7.73628 -7.16501 -6.76089 -4.58508 0.96018 1.60253 2.56604 2.68529 2.86760 2.96427 2.99552 3.04790 3.17902 3.76337 3.79077 3.99158 4.23752 4.33577 5.00880 5.07472 5.28110 5.36099 5.46029 5.61468 5.91071 6.12369 6.17531 6.28744 6.41039 6.67337 6.72823 6.83369 6.93163 7.08907 7.35309 7.42518 7.71136 7.78726 7.86878 7.95744 8.09983 8.13392 8.36433 8.55713 8.68041 9.87828 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.016863 B = 0.007175 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.077967 B = 3901.373701 C = 5112.294751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.278 3.722 3 C 0.072 3.928 4 N -0.412 5.412 5 C 0.027 3.973 6 C -0.097 4.097 7 C -0.158 4.158 8 C 0.229 3.771 9 N -0.620 5.620 10 C 0.000 4.000 11 C -0.104 4.104 12 C -0.225 4.225 13 C -0.104 4.104 14 C -0.149 4.149 15 C 0.113 3.887 16 C -0.468 4.468 17 H 0.081 0.919 18 C 0.086 3.914 19 N -0.773 5.773 20 Si 0.899 3.101 21 H -0.258 1.258 22 H -0.268 1.268 23 H -0.272 1.272 24 H 0.157 0.843 25 H 0.137 0.863 26 H 0.158 0.842 27 H 0.407 0.593 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.599 -5.166 -1.762 9.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.038 4.038 3 C -0.070 4.070 4 N -0.121 5.121 5 C -0.139 4.139 6 C -0.119 4.119 7 C -0.188 4.188 8 C 0.113 3.887 9 N -0.232 5.232 10 C -0.095 4.095 11 C -0.124 4.124 12 C -0.245 4.245 13 C -0.123 4.123 14 C -0.168 4.168 15 C 0.109 3.891 16 C -0.496 4.496 17 H 0.099 0.901 18 C -0.136 4.136 19 N -0.396 5.396 20 Si 0.723 3.277 21 H -0.181 1.181 22 H -0.193 1.193 23 H -0.197 1.197 24 H 0.174 0.826 25 H 0.155 0.845 26 H 0.175 0.825 27 H 0.244 0.756 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.126 0.874 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.274 -5.462 -1.894 7.825 hybrid contribution 0.072 0.798 0.909 1.212 sum 5.345 -4.664 -0.985 7.162 Atomic orbital electron populations 1.81204 1.11590 1.06914 1.09867 1.24991 0.91749 0.93731 0.93320 1.15632 0.85683 0.90070 1.15573 1.67223 1.10790 1.25608 1.08490 1.22288 0.88200 0.98696 1.04753 1.22131 1.01276 0.92604 0.95851 1.21682 0.91932 1.00463 1.04679 1.18783 0.92641 0.86004 0.91318 1.41676 1.08701 1.04011 1.68823 1.17577 1.00971 0.90572 1.00337 1.20546 0.97029 0.97079 0.97748 1.20207 1.03883 0.96858 1.03568 1.20453 0.97506 0.97861 0.96502 1.20726 0.95915 0.98755 1.01451 1.17441 0.92389 0.91140 0.88095 1.19381 1.10507 0.94279 1.25460 0.90093 1.25884 0.95724 0.94279 0.97671 1.69872 1.30870 1.03761 1.35088 0.86386 0.79219 0.80358 0.81735 1.18113 1.19308 1.19747 0.82601 0.84515 0.82460 0.75552 0.88090 0.88714 0.89008 0.87405 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -8.14 18.54 41.84 0.78 -7.37 16 2 C 0.28 5.10 14.31 -22.47 -0.32 4.78 16 3 C 0.07 1.24 6.61 -84.73 -0.56 0.68 16 4 N -0.41 -6.48 10.27 -10.91 -0.11 -6.59 16 5 C 0.03 0.33 11.17 -17.54 -0.20 0.13 16 6 C -0.10 -1.14 10.10 -39.38 -0.40 -1.54 16 7 C -0.16 -2.36 8.16 -39.09 -0.32 -2.68 16 8 C 0.23 3.96 6.49 -83.40 -0.54 3.42 16 9 N -0.62 -12.16 4.82 -7.76 -0.04 -12.19 16 10 C 0.00 0.00 5.99 -83.28 -0.50 -0.50 16 11 C -0.10 -2.02 7.32 -39.42 -0.29 -2.31 16 12 C -0.23 -4.36 10.03 -39.37 -0.40 -4.76 16 13 C -0.10 -2.16 9.96 -39.98 -0.40 -2.56 16 14 C -0.15 -3.44 8.68 -39.29 -0.34 -3.79 16 15 C 0.11 2.70 5.50 -106.63 -0.59 2.11 16 16 C -0.47 -11.37 8.32 -37.90 -0.32 -11.69 16 17 H 0.08 1.96 7.67 -52.49 -0.40 1.55 16 18 C 0.09 2.01 4.88 -17.33 -0.08 1.93 16 19 N -0.77 -18.60 11.85 55.55 0.66 -17.94 16 20 Si 0.90 17.81 29.63 -169.99 -5.04 12.77 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 22 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 23 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 24 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 25 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 26 H 0.16 2.42 5.13 -52.49 -0.27 2.15 16 27 H 0.41 8.26 7.22 -40.82 -0.29 7.96 16 28 H 0.10 1.75 6.45 -52.49 -0.34 1.41 16 29 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 31 H 0.11 2.57 6.82 -52.49 -0.36 2.22 16 32 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 LS Contribution 287.77 15.07 4.34 4.34 Total: -1.00 -25.85 287.77 -7.15 -32.99 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -2.49 Total: 10.75 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -5.24 Total: -16.76 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 1.28 Total: -44.09 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.04 Total: 12.77 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -25.85 -7.15 -32.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210147281.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.871 kcal (2) G-P(sol) polarization free energy of solvation -25.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds