Wall clock time and date at job start Mon Mar 30 2020 00:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86804 * 120.00106 * 2 1 4 4 H 1.48497 * 109.47040 * 239.99564 * 3 2 1 5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47116 * 119.99441 * 3 2 1 7 7 C 1.39927 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00169 * 197.55762 * 7 2 1 9 9 C 1.41436 * 119.99932 * 17.55651 * 7 2 1 10 10 C 1.40819 * 120.60729 * 203.74892 * 9 7 2 11 11 N 1.31498 * 120.66618 * 180.31316 * 10 9 7 12 12 C 1.31941 * 122.11392 * 359.71899 * 11 10 9 13 13 C 1.39676 * 121.15490 * 359.97438 * 12 11 10 14 14 C 1.48425 * 120.40843 * 179.97438 * 13 12 11 15 15 C 1.41416 * 119.98010 * 180.02562 * 14 13 12 16 16 C 1.35780 * 119.59956 * 179.97438 * 15 14 13 17 17 C 1.41043 * 119.48834 * 359.97438 * 16 15 14 18 18 N 1.32566 * 132.15079 * 179.97438 * 17 16 15 19 19 C 1.33523 * 109.18339 * 180.02562 * 18 17 16 20 20 C 1.35094 * 108.62765 * 0.02562 * 19 18 17 21 21 N 1.36892 * 107.16446 * 0.02562 * 20 19 18 22 22 C 1.36071 * 119.98189 * 359.75047 * 14 13 12 23 23 C 1.39165 * 119.17823 * 0.02562 * 13 12 11 24 24 H 0.97003 * 119.99715 * 0.02562 * 1 2 3 25 25 H 1.08006 * 119.66512 * 0.02562 * 10 9 7 26 26 H 1.08007 * 119.41800 * 179.97438 * 12 11 10 27 27 H 1.08002 * 120.20440 * 0.02749 * 15 14 13 28 28 H 1.07995 * 120.26017 * 179.97438 * 16 15 14 29 29 H 1.07993 * 125.68603 * 179.97438 * 19 18 17 30 30 H 1.07998 * 126.41376 * 179.97438 * 20 19 18 31 31 H 1.08008 * 119.75212 * 0.02562 * 22 14 13 32 32 H 1.08000 * 120.95202 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.0962 1.6963 -1.2124 5 1 1.2774 2.7465 -0.0006 6 1 3.0960 1.6965 1.2126 7 6 2.0080 -1.2118 0.0005 8 1 3.0502 -1.2335 0.2827 9 6 1.3502 -2.4083 -0.3684 10 6 1.8276 -3.6558 0.0775 11 7 1.2205 -4.7693 -0.2698 12 6 0.1472 -4.7732 -1.0371 13 6 -0.3998 -3.5823 -1.5204 14 6 -1.6075 -3.6059 -2.3829 15 6 -2.1535 -2.3948 -2.8677 16 6 -3.2581 -2.4254 -3.6566 17 6 -3.8450 -3.6661 -3.9816 18 7 -4.9028 -3.9852 -4.7142 19 6 -5.0501 -5.3123 -4.7173 20 6 -4.0657 -5.8575 -3.9699 21 7 -3.2981 -4.8267 -3.4987 22 6 -2.1855 -4.7932 -2.7113 23 6 0.2022 -2.3735 -1.1841 24 1 -0.4850 0.8401 -0.0004 25 1 2.7039 -3.6987 0.7074 26 1 -0.3166 -5.7136 -1.2959 27 1 -1.6940 -1.4512 -2.6127 28 1 -3.6842 -1.5070 -4.0323 29 1 -5.8272 -5.8587 -5.2310 30 1 -3.9134 -6.9096 -3.7791 31 1 -1.7623 -5.7157 -2.3418 32 1 -0.1965 -1.4358 -1.5423 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240219839.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:06:39 Heat of formation + Delta-G solvation = 110.710424 kcal Electronic energy + Delta-G solvation = -18429.324481 eV Core-core repulsion = 15548.501620 eV Total energy + Delta-G solvation = -2880.822861 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.50724 -38.81351 -36.92392 -34.28749 -33.42146 -31.99213 -30.57616 -28.63866 -28.08834 -25.85590 -23.71551 -23.05442 -21.58065 -21.36605 -20.62028 -17.63127 -17.42940 -16.54646 -15.89481 -15.61656 -15.37859 -15.03207 -14.36080 -14.28067 -13.83036 -13.46140 -13.09344 -12.75467 -12.51347 -11.90577 -11.68169 -11.58173 -11.50263 -11.36307 -10.98517 -10.80712 -10.71397 -10.11665 -9.94904 -9.54052 -9.18335 -8.33364 -8.09831 -7.83087 -7.33129 -7.02726 -4.68690 0.92846 1.40273 2.45266 2.69776 2.84123 2.92999 2.94482 3.05316 3.20697 3.72101 3.87278 4.43072 4.45912 4.70480 4.90684 5.18675 5.25225 5.44614 5.45280 5.61407 5.75955 5.81615 6.10800 6.19529 6.30330 6.36784 6.56223 6.72961 6.80731 6.82828 6.90106 6.98009 7.28682 7.41632 7.63174 7.68521 8.05259 8.20253 8.46415 8.48916 9.40066 9.86947 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.026064 B = 0.005245 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.004308 B = 5337.235487 C = 6333.494472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.446 4.446 8 H 0.086 0.914 9 C 0.062 3.938 10 C -0.013 4.013 11 N -0.466 5.466 12 C -0.029 4.029 13 C -0.088 4.088 14 C -0.021 4.021 15 C -0.078 4.078 16 C -0.093 4.093 17 C 0.220 3.780 18 N -0.506 5.506 19 C 0.023 3.977 20 C -0.110 4.110 21 N -0.351 5.351 22 C 0.031 3.969 23 C -0.113 4.113 24 H 0.287 0.713 25 H 0.129 0.871 26 H 0.120 0.880 27 H 0.150 0.850 28 H 0.149 0.851 29 H 0.176 0.824 30 H 0.178 0.822 31 H 0.165 0.835 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.461 -2.988 -4.960 7.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.144 4.144 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.475 4.475 8 H 0.104 0.896 9 C 0.058 3.942 10 C -0.174 4.174 11 N -0.173 5.173 12 C -0.186 4.186 13 C -0.091 4.091 14 C -0.024 4.024 15 C -0.102 4.102 16 C -0.113 4.113 17 C -0.024 4.024 18 N -0.226 5.226 19 C -0.129 4.129 20 C -0.242 4.242 21 N -0.021 5.021 22 C -0.091 4.091 23 C -0.138 4.138 24 H 0.098 0.902 25 H 0.147 0.853 26 H 0.137 0.863 27 H 0.168 0.832 28 H 0.166 0.834 29 H 0.193 0.807 30 H 0.195 0.805 31 H 0.182 0.818 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.870 -3.146 -5.050 7.689 hybrid contribution 0.429 0.859 0.219 0.985 sum -4.442 -2.287 -4.831 6.950 Atomic orbital electron populations 1.69758 1.07733 1.30111 1.33607 1.25991 0.94835 1.01764 0.91842 0.86252 0.80165 0.79521 0.80306 1.18550 1.20068 1.18692 1.19576 0.98311 0.90742 1.38893 0.89597 1.18463 0.91998 0.93819 0.89939 1.22601 1.02499 0.87940 1.04366 1.66942 1.07679 1.32008 1.10653 1.21674 0.97369 0.94981 1.04599 1.19143 0.94393 0.95942 0.99617 1.18457 0.95729 0.91119 0.97127 1.21367 0.94590 0.99221 0.95000 1.20154 0.96435 0.94329 1.00346 1.21014 0.94244 0.87843 0.99268 1.70709 1.16239 1.14091 1.21538 1.22389 0.99339 0.90447 1.00762 1.22591 0.98548 0.93629 1.09420 1.42711 1.18953 1.08840 1.31617 1.21602 0.88860 1.00695 0.97927 1.21812 0.97738 0.95911 0.98352 0.90197 0.85316 0.86300 0.83236 0.83363 0.80704 0.80497 0.81764 0.84718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.12 10.91 55.55 0.61 -17.52 16 2 C 0.08 1.68 5.18 -17.35 -0.09 1.59 16 3 Si 0.91 16.82 29.59 -169.99 -5.03 11.79 16 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 5 H -0.28 -4.98 7.11 56.52 0.40 -4.57 16 6 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 7 C -0.45 -10.62 9.08 -37.73 -0.34 -10.96 16 8 H 0.09 1.94 7.90 -52.48 -0.41 1.52 16 9 C 0.06 1.51 5.59 -106.71 -0.60 0.92 16 10 C -0.01 -0.30 10.96 -16.72 -0.18 -0.48 16 11 N -0.47 -10.78 10.32 -12.28 -0.13 -10.91 16 12 C -0.03 -0.61 10.58 -16.97 -0.18 -0.79 16 13 C -0.09 -1.86 5.88 -104.82 -0.62 -2.48 16 14 C -0.02 -0.38 5.84 -105.27 -0.61 -1.00 16 15 C -0.08 -1.33 9.43 -39.25 -0.37 -1.70 16 16 C -0.09 -1.48 10.09 -39.40 -0.40 -1.88 16 17 C 0.22 3.81 7.80 -155.99 -1.22 2.59 16 18 N -0.51 -8.68 11.32 -12.75 -0.14 -8.83 16 19 C 0.02 0.32 11.83 -17.93 -0.21 0.11 16 20 C -0.11 -1.50 11.76 -16.41 -0.19 -1.69 16 21 N -0.35 -5.70 2.94 -62.36 -0.18 -5.89 16 22 C 0.03 0.51 10.36 -16.32 -0.17 0.34 16 23 C -0.11 -2.62 8.17 -38.24 -0.31 -2.93 16 24 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 25 H 0.13 2.79 8.06 -52.48 -0.42 2.36 16 26 H 0.12 2.16 6.17 -52.48 -0.32 1.84 16 27 H 0.15 2.51 6.30 -52.49 -0.33 2.18 16 28 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 29 H 0.18 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.17 2.34 6.11 -52.48 -0.32 2.02 16 32 H 0.14 3.09 4.44 -52.49 -0.23 2.86 16 LS Contribution 280.41 15.07 4.23 4.23 Total: -1.00 -27.57 280.41 -8.60 -36.16 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -2.45 Total: 9.32 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -5.50 Total: -18.36 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.15 Total: -43.14 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.57 -8.60 -36.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240219839.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.874 kcal (2) G-P(sol) polarization free energy of solvation -27.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds