Wall clock time and date at job start Mon Mar 30 2020 00:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86804 * 120.00106 * 2 1 4 4 H 1.48497 * 109.47040 * 239.99564 * 3 2 1 5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47116 * 119.99441 * 3 2 1 7 7 C 1.39927 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00169 * 197.55762 * 7 2 1 9 9 C 1.41436 * 119.99932 * 17.55651 * 7 2 1 10 10 C 1.40819 * 120.60729 * 203.74892 * 9 7 2 11 11 N 1.31498 * 120.66618 * 180.31316 * 10 9 7 12 12 C 1.31941 * 122.11392 * 359.71899 * 11 10 9 13 13 C 1.39676 * 121.15490 * 359.97438 * 12 11 10 14 14 C 1.48425 * 120.40843 * 179.97438 * 13 12 11 15 15 C 1.41416 * 119.98010 * 180.02562 * 14 13 12 16 16 C 1.35780 * 119.59956 * 179.97438 * 15 14 13 17 17 C 1.41043 * 119.48834 * 359.97438 * 16 15 14 18 18 N 1.32566 * 132.15079 * 179.97438 * 17 16 15 19 19 C 1.33523 * 109.18339 * 180.02562 * 18 17 16 20 20 C 1.35094 * 108.62765 * 0.02562 * 19 18 17 21 21 N 1.36892 * 107.16446 * 0.02562 * 20 19 18 22 22 C 1.36071 * 119.98189 * 359.75047 * 14 13 12 23 23 C 1.39165 * 119.17823 * 0.02562 * 13 12 11 24 24 H 0.97003 * 119.99715 * 0.02562 * 1 2 3 25 25 H 1.08006 * 119.66512 * 0.02562 * 10 9 7 26 26 H 1.08007 * 119.41800 * 179.97438 * 12 11 10 27 27 H 1.08002 * 120.20440 * 0.02749 * 15 14 13 28 28 H 1.07995 * 120.26017 * 179.97438 * 16 15 14 29 29 H 1.07993 * 125.68603 * 179.97438 * 19 18 17 30 30 H 1.07998 * 126.41376 * 179.97438 * 20 19 18 31 31 H 1.08008 * 119.75212 * 0.02562 * 22 14 13 32 32 H 1.08000 * 120.95202 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.0962 1.6963 -1.2124 5 1 1.2774 2.7465 -0.0006 6 1 3.0960 1.6965 1.2126 7 6 2.0080 -1.2118 0.0005 8 1 3.0502 -1.2335 0.2827 9 6 1.3502 -2.4083 -0.3684 10 6 1.8276 -3.6558 0.0775 11 7 1.2205 -4.7693 -0.2698 12 6 0.1472 -4.7732 -1.0371 13 6 -0.3998 -3.5823 -1.5204 14 6 -1.6075 -3.6059 -2.3829 15 6 -2.1535 -2.3948 -2.8677 16 6 -3.2581 -2.4254 -3.6566 17 6 -3.8450 -3.6661 -3.9816 18 7 -4.9028 -3.9852 -4.7142 19 6 -5.0501 -5.3123 -4.7173 20 6 -4.0657 -5.8575 -3.9699 21 7 -3.2981 -4.8267 -3.4987 22 6 -2.1855 -4.7932 -2.7113 23 6 0.2022 -2.3735 -1.1841 24 1 -0.4850 0.8401 -0.0004 25 1 2.7039 -3.6987 0.7074 26 1 -0.3166 -5.7136 -1.2959 27 1 -1.6940 -1.4512 -2.6127 28 1 -3.6842 -1.5070 -4.0323 29 1 -5.8272 -5.8587 -5.2310 30 1 -3.9134 -6.9096 -3.7791 31 1 -1.7623 -5.7157 -2.3418 32 1 -0.1965 -1.4358 -1.5423 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240219839.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:06:39 Heat of formation + Delta-G solvation = 97.318709 kcal Electronic energy + Delta-G solvation = -18429.905189 eV Core-core repulsion = 15548.501620 eV Total energy + Delta-G solvation = -2881.403569 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.71605 -40.44892 -38.28812 -35.99937 -34.68194 -33.47533 -32.31302 -29.85599 -29.53224 -27.56680 -25.06848 -24.53010 -23.04170 -22.70949 -22.08874 -19.29559 -18.70134 -17.95733 -17.47055 -16.96244 -16.84843 -16.47507 -15.92319 -15.54433 -15.10647 -14.74923 -14.44810 -14.40192 -14.02737 -13.44325 -13.22198 -13.19592 -12.94077 -12.83487 -12.46803 -12.20370 -12.07335 -11.78636 -11.21313 -11.15562 -10.61587 -10.07884 -9.81383 -9.19224 -8.77163 -8.64183 -6.47812 -0.39893 0.08899 0.87119 1.08176 1.41392 1.51185 1.55145 1.63939 1.98990 2.18272 2.51337 2.76799 3.26834 3.46703 3.67719 3.69558 3.84142 4.02118 4.21281 4.38577 4.45694 4.52992 4.65278 4.74587 4.83780 4.98797 5.02194 5.15682 5.26394 5.31345 5.47667 5.70623 5.74084 5.87671 5.96766 6.06082 6.44569 6.71651 6.73570 6.87488 7.64238 8.21023 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.026064 B = 0.005245 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.004308 B = 5337.235487 C = 6333.494472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.041 3.959 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.478 4.478 8 H 0.087 0.913 9 C 0.038 3.962 10 C -0.036 4.036 11 N -0.477 5.477 12 C -0.034 4.034 13 C -0.079 4.079 14 C -0.048 4.048 15 C -0.090 4.090 16 C -0.087 4.087 17 C 0.191 3.809 18 N -0.528 5.528 19 C 0.015 3.985 20 C -0.098 4.098 21 N -0.361 5.361 22 C 0.052 3.948 23 C -0.135 4.135 24 H 0.294 0.706 25 H 0.136 0.864 26 H 0.154 0.846 27 H 0.142 0.858 28 H 0.167 0.833 29 H 0.212 0.788 30 H 0.219 0.781 31 H 0.190 0.810 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.619 -3.987 -5.881 9.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.176 4.176 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.507 4.507 8 H 0.105 0.895 9 C 0.034 3.966 10 C -0.197 4.197 11 N -0.184 5.184 12 C -0.192 4.192 13 C -0.082 4.082 14 C -0.052 4.052 15 C -0.114 4.114 16 C -0.107 4.107 17 C -0.051 4.051 18 N -0.249 5.249 19 C -0.136 4.136 20 C -0.229 4.229 21 N -0.032 5.032 22 C -0.070 4.070 23 C -0.161 4.161 24 H 0.105 0.895 25 H 0.153 0.847 26 H 0.171 0.829 27 H 0.160 0.840 28 H 0.184 0.816 29 H 0.229 0.771 30 H 0.236 0.764 31 H 0.206 0.794 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.039 -4.163 -5.973 9.460 hybrid contribution 0.585 0.989 0.391 1.214 sum -5.455 -3.174 -5.583 8.426 Atomic orbital electron populations 1.69798 1.08952 1.31343 1.33713 1.26756 0.95504 1.04495 0.90882 0.85216 0.78842 0.75398 0.80196 1.18409 1.19151 1.18329 1.19843 0.98701 0.91708 1.40454 0.89451 1.18777 0.92807 0.94450 0.90561 1.22744 1.03370 0.88104 1.05451 1.66966 1.08432 1.31819 1.11225 1.22250 0.96827 0.96431 1.03712 1.19328 0.94826 0.95174 0.98909 1.18310 0.95768 0.92549 0.98575 1.21266 0.95338 0.98748 0.96034 1.20319 0.95755 0.95110 0.99514 1.21255 0.95010 0.88558 1.00322 1.70706 1.16340 1.16072 1.21772 1.23124 1.00261 0.89482 1.00692 1.23406 0.97096 0.94857 1.07503 1.42933 1.19086 1.09401 1.31751 1.21785 0.88137 1.00723 0.96315 1.21876 0.98232 0.96745 0.99222 0.89457 0.84655 0.82893 0.83998 0.81587 0.77099 0.76449 0.79367 0.85240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.27 10.91 21.82 0.24 -38.03 16 2 C 0.04 1.86 5.18 85.25 0.44 2.30 16 3 Si 0.98 34.61 29.59 68.60 2.03 36.64 16 4 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 5 H -0.27 -8.94 7.11 99.48 0.71 -8.23 16 6 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 7 C -0.48 -23.53 9.08 23.47 0.21 -23.32 16 8 H 0.09 4.09 7.90 -2.91 -0.02 4.07 16 9 C 0.04 1.94 5.59 -21.22 -0.12 1.82 16 10 C -0.04 -1.75 10.96 85.37 0.94 -0.81 16 11 N -0.48 -22.16 10.32 -192.75 -1.99 -24.14 16 12 C -0.03 -1.43 10.58 85.02 0.90 -0.53 16 13 C -0.08 -3.38 5.88 -19.99 -0.12 -3.50 16 14 C -0.05 -1.75 5.84 -20.28 -0.12 -1.86 16 15 C -0.09 -3.10 9.43 22.48 0.21 -2.89 16 16 C -0.09 -2.74 10.09 22.39 0.23 -2.52 16 17 C 0.19 6.31 7.80 134.13 1.05 7.36 16 18 N -0.53 -16.96 11.32 -194.26 -2.20 -19.16 16 19 C 0.02 0.37 11.83 83.71 0.99 1.36 16 20 C -0.10 -2.27 11.76 83.18 0.98 -1.29 16 21 N -0.36 -10.72 2.94 -351.20 -1.03 -11.75 16 22 C 0.05 1.59 10.36 83.49 0.86 2.45 16 23 C -0.14 -6.48 8.17 23.14 0.19 -6.29 16 24 H 0.29 12.48 8.30 -92.71 -0.77 11.71 16 25 H 0.14 6.10 8.06 -2.91 -0.02 6.07 16 26 H 0.15 5.15 6.17 -2.91 -0.02 5.14 16 27 H 0.14 4.99 6.30 -2.91 -0.02 4.97 16 28 H 0.17 4.40 8.06 -2.91 -0.02 4.38 16 29 H 0.21 3.33 8.06 -2.91 -0.02 3.30 16 30 H 0.22 3.06 8.06 -2.91 -0.02 3.04 16 31 H 0.19 4.66 6.11 -2.91 -0.02 4.64 16 32 H 0.13 6.23 4.44 -2.91 -0.01 6.21 16 Total: -1.00 -60.25 280.41 4.86 -55.40 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 1.17 Total: 28.78 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 6.64 Total: -27.72 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -4.98 Total: -93.09 kcal Atomic # 14 Polarization: 34.61 SS G_CDS: 2.03 Total: 36.64 kcal Total: -60.25 4.86 -55.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240219839.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.714 kcal (2) G-P(sol) polarization free energy of solvation -60.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds