Wall clock time and date at job start Mon Mar 30 2020 00:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30809 * 1 3 3 Si 1.86798 * 120.00149 * 2 1 4 4 H 1.48501 * 109.46803 * 275.40906 * 3 2 1 5 5 H 1.48495 * 109.47095 * 35.40785 * 3 2 1 6 6 H 1.48498 * 109.47007 * 155.41255 * 3 2 1 7 7 C 1.40018 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00307 * 341.79848 * 7 2 1 9 9 C 1.40944 * 119.99659 * 161.80555 * 7 2 1 10 10 C 1.41362 * 120.54223 * 150.56307 * 9 7 2 11 11 C 1.36506 * 118.42952 * 180.26953 * 10 9 7 12 12 C 1.40085 * 119.45778 * 359.74144 * 11 10 9 13 13 C 1.47575 * 119.46644 * 180.02562 * 12 11 10 14 14 C 1.39108 * 120.28984 * 359.97438 * 13 12 11 15 15 C 1.38458 * 120.35787 * 179.97438 * 14 13 12 16 16 C 1.37899 * 120.78801 * 0.02562 * 15 14 13 17 17 C 1.39255 * 120.19956 * 359.97438 * 16 15 14 18 18 N 1.37197 * 133.63887 * 180.02562 * 17 16 15 19 19 H 0.96997 * 125.97874 * 0.02562 * 18 17 16 20 20 N 1.40027 * 108.04184 * 180.02562 * 18 17 16 21 21 C 1.30299 * 109.68947 * 359.97438 * 20 18 17 22 22 C 1.40663 * 119.79216 * 359.72463 * 17 16 15 23 23 N 1.33163 * 121.07390 * 359.97438 * 12 11 10 24 24 C 1.31199 * 121.70949 * 0.02562 * 23 12 11 25 25 H 0.96992 * 119.99406 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.78716 * 0.02562 * 10 9 7 27 27 H 1.08001 * 120.27271 * 179.72720 * 11 10 9 28 28 H 1.07993 * 119.82276 * 359.97399 * 14 13 12 29 29 H 1.08005 * 119.60308 * 179.97438 * 15 14 13 30 30 H 1.07997 * 119.90055 * 180.02562 * 16 15 14 31 31 H 1.07999 * 125.65461 * 180.02562 * 21 20 18 32 32 H 1.07995 * 119.79658 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3753 2.1123 -1.3939 5 1 1.5014 2.6169 0.8112 6 1 3.5921 1.4098 0.5825 7 6 2.0081 -1.2126 -0.0005 8 1 1.5086 -2.1247 0.2912 9 6 3.3647 -1.2430 -0.3817 10 6 4.2409 -2.2124 0.1576 11 6 5.5475 -2.1988 -0.2374 12 6 5.9780 -1.2377 -1.1611 13 6 7.3904 -1.2232 -1.5886 14 6 8.2875 -2.1559 -1.0785 15 6 9.6128 -2.1440 -1.4790 16 6 10.0674 -1.2110 -2.3871 17 6 9.1935 -0.2643 -2.9156 18 7 9.3405 0.7635 -3.8125 19 1 10.1624 1.0136 -4.2629 20 7 8.0965 1.3883 -3.9638 21 6 7.2131 0.7955 -3.2115 22 6 7.8422 -0.2655 -2.5249 23 7 5.1333 -0.3374 -1.6604 24 6 3.8689 -0.3103 -1.3115 25 1 -0.4849 0.8400 -0.0004 26 1 3.8859 -2.9440 0.8683 27 1 6.2437 -2.9231 0.1591 28 1 7.9484 -2.8934 -0.3661 29 1 10.2990 -2.8736 -1.0748 30 1 11.1040 -1.2150 -2.6899 31 1 6.1711 1.0676 -3.1304 32 1 3.2110 0.4339 -1.7355 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240309453.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:53 Heat of formation + Delta-G solvation = 93.106253 kcal Electronic energy + Delta-G solvation = -18550.879165 eV Core-core repulsion = 15669.292930 eV Total energy + Delta-G solvation = -2881.586235 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.27613 -40.44037 -37.88739 -35.96030 -33.99468 -33.09726 -32.27606 -30.67956 -30.09457 -27.12679 -24.50758 -24.20609 -22.96614 -22.49459 -21.96538 -19.66658 -18.79454 -17.76527 -17.56568 -16.58259 -16.32883 -15.88892 -15.79404 -15.43346 -15.33063 -14.90853 -14.58851 -14.20923 -14.10839 -13.49435 -13.14029 -12.91448 -12.80077 -12.57656 -12.25523 -12.12224 -11.87850 -11.79322 -11.40644 -11.15265 -10.45183 -10.01935 -9.87584 -9.42897 -9.07648 -8.62967 -6.57297 -0.33583 0.49796 0.79072 0.92095 1.25635 1.37752 1.42865 1.66670 1.90669 2.02622 2.48972 2.99585 3.55945 3.58190 3.81963 3.88437 4.17172 4.22735 4.31790 4.44237 4.48306 4.62641 4.73439 4.87446 4.93288 5.06279 5.11895 5.25008 5.47587 5.50629 5.52523 5.68858 5.82040 5.97382 6.03817 6.12258 6.46759 6.49229 6.59035 6.70559 7.50963 7.97712 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.028015 B = 0.005793 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.208451 B = 4832.393162 C = 5641.527874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.058 3.942 3 Si 0.955 3.045 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.447 4.447 8 H 0.076 0.924 9 C 0.032 3.968 10 C -0.187 4.187 11 C -0.096 4.096 12 C -0.006 4.006 13 C 0.055 3.945 14 C -0.171 4.171 15 C -0.050 4.050 16 C -0.160 4.160 17 C 0.119 3.881 18 N -0.505 5.505 19 H 0.451 0.549 20 N -0.291 5.291 21 C 0.083 3.917 22 C -0.195 4.195 23 N -0.448 5.448 24 C -0.045 4.045 25 H 0.302 0.698 26 H 0.130 0.870 27 H 0.154 0.846 28 H 0.147 0.853 29 H 0.171 0.829 30 H 0.157 0.843 31 H 0.188 0.812 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.572 -2.067 -1.478 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.161 4.161 3 Si 0.779 3.221 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.189 1.189 7 C -0.475 4.475 8 H 0.094 0.906 9 C 0.028 3.972 10 C -0.212 4.212 11 C -0.115 4.115 12 C -0.141 4.141 13 C 0.052 3.948 14 C -0.192 4.192 15 C -0.070 4.070 16 C -0.183 4.183 17 C 0.002 3.998 18 N -0.223 5.223 19 H 0.298 0.702 20 N -0.107 5.107 21 C -0.112 4.112 22 C -0.203 4.203 23 N -0.155 5.155 24 C -0.209 4.209 25 H 0.113 0.887 26 H 0.148 0.852 27 H 0.171 0.829 28 H 0.164 0.836 29 H 0.189 0.811 30 H 0.175 0.825 31 H 0.204 0.796 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 16.768 -0.391 -2.929 17.026 hybrid contribution -0.799 -0.256 0.861 1.202 sum 15.969 -0.647 -2.068 16.115 Atomic orbital electron populations 1.69659 1.08933 1.32280 1.33162 1.26743 0.95264 1.03803 0.90324 0.85637 0.79269 0.77278 0.79913 1.18165 1.19278 1.18881 1.19510 0.93709 0.96134 1.38144 0.90612 1.18854 0.93943 0.93376 0.91076 1.21357 0.93367 1.02939 1.03554 1.21691 0.96201 0.97725 0.95928 1.19474 0.93053 0.98179 1.03416 1.18337 0.90697 0.93172 0.92626 1.21288 0.93672 1.00364 1.03831 1.21259 0.94867 0.96873 0.94049 1.20420 0.99631 0.96172 1.02039 1.19191 0.95026 0.92225 0.93366 1.45975 1.09785 1.26937 1.39568 0.70158 1.76658 0.90830 1.20672 1.22529 1.24197 0.99925 0.93521 0.93512 1.19040 0.93945 1.01852 1.05465 1.66974 1.03646 1.21677 1.23229 1.22483 0.92274 1.04034 1.02085 0.88710 0.85224 0.82902 0.83588 0.81135 0.82548 0.79566 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.19 13.93 21.84 0.30 -40.88 16 2 C 0.06 2.90 5.41 85.28 0.46 3.36 16 3 Si 0.96 41.27 24.52 68.60 1.68 42.95 16 4 H -0.26 -10.75 6.71 99.48 0.67 -10.08 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 6 H -0.26 -12.19 6.86 99.48 0.68 -11.51 16 7 C -0.45 -23.12 9.58 23.36 0.22 -22.89 16 8 H 0.08 4.11 8.06 -2.91 -0.02 4.08 16 9 C 0.03 1.58 5.12 -21.17 -0.11 1.47 16 10 C -0.19 -7.96 9.87 22.63 0.22 -7.74 16 11 C -0.10 -3.64 9.38 22.31 0.21 -3.44 16 12 C -0.01 -0.26 6.74 41.86 0.28 0.02 16 13 C 0.06 1.98 5.91 -19.84 -0.12 1.87 16 14 C -0.17 -4.55 9.40 22.53 0.21 -4.34 16 15 C -0.05 -1.01 10.00 22.24 0.22 -0.78 16 16 C -0.16 -3.44 10.06 22.43 0.23 -3.21 16 17 C 0.12 3.48 7.32 39.14 0.29 3.77 16 18 N -0.51 -13.96 7.45 -51.56 -0.38 -14.34 16 19 H 0.45 8.64 8.96 -213.37 -1.91 6.73 16 20 N -0.29 -10.13 12.58 -56.43 -0.71 -10.84 16 21 C 0.08 3.17 11.17 85.64 0.96 4.12 16 22 C -0.19 -7.09 5.99 -21.20 -0.13 -7.21 16 23 N -0.45 -20.73 7.74 -182.82 -1.42 -22.14 16 24 C -0.05 -2.20 8.36 85.47 0.71 -1.49 16 25 H 0.30 13.58 8.29 -92.71 -0.77 12.81 16 26 H 0.13 4.96 8.06 -2.91 -0.02 4.94 16 27 H 0.15 4.40 6.15 -2.91 -0.02 4.38 16 28 H 0.15 3.20 6.13 -2.91 -0.02 3.19 16 29 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 30 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 31 H 0.19 7.52 6.65 -2.91 -0.02 7.50 16 32 H 0.13 6.17 4.72 -2.91 -0.01 6.15 16 Total: -1.00 -61.83 274.32 2.35 -59.47 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -0.79 Total: 22.28 kcal Atomic # 6 Polarization: -40.16 SS G_CDS: 3.66 Total: -36.50 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -2.21 Total: -88.21 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.68 Total: 42.95 kcal Total: -61.83 2.35 -59.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240309453.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.578 kcal (2) G-P(sol) polarization free energy of solvation -61.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds