Wall clock time and date at job start Mon Mar 30 2020 00:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30756 * 1 3 3 Si 1.86802 * 119.99640 * 2 1 4 4 H 1.48508 * 109.47003 * 240.00186 * 3 2 1 5 5 H 1.48494 * 109.47229 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46969 * 120.00257 * 3 2 1 7 7 C 1.40007 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00003 * 180.02562 * 7 2 1 9 9 C 1.41355 * 120.00296 * 359.97438 * 7 2 1 10 10 C 1.40693 * 119.77083 * 179.97438 * 9 7 2 11 11 C 1.38274 * 119.19616 * 180.02562 * 10 9 7 12 12 C 1.38705 * 118.69104 * 359.72626 * 11 10 9 13 13 C 1.39902 * 119.46554 * 0.53208 * 12 11 10 14 14 C 1.48287 * 119.61157 * 179.72909 * 13 12 11 15 15 C 1.38261 * 119.71228 * 4.73134 * 14 13 12 16 16 N 1.34004 * 122.08480 * 179.97438 * 15 14 13 17 17 H 0.97003 * 119.64873 * 180.02562 * 16 15 14 18 18 C 1.37113 * 120.70131 * 0.02882 * 16 15 14 19 19 N 1.32102 * 134.51065 * 179.97438 * 18 16 15 20 20 C 1.33355 * 110.90195 * 179.97438 * 19 18 16 21 21 C 1.35845 * 110.88027 * 359.97438 * 20 19 18 22 22 C 1.41312 * 106.46985 * 0.02562 * 21 20 19 23 23 C 1.38936 * 135.65662 * 180.02562 * 22 21 20 24 24 N 1.32253 * 120.77825 * 359.46136 * 13 12 11 25 25 H 0.96998 * 119.99767 * 0.02562 * 1 2 3 26 26 H 1.08009 * 120.40687 * 0.03815 * 10 9 7 27 27 H 1.07998 * 120.65816 * 180.02562 * 11 10 9 28 28 H 1.08000 * 120.26806 * 180.26666 * 12 11 10 29 29 H 1.08003 * 118.95658 * 0.28122 * 15 14 13 30 30 H 1.08004 * 124.55949 * 180.02562 * 20 19 18 31 31 H 1.07998 * 126.76447 * 180.02562 * 21 20 19 32 32 H 1.08001 * 120.72663 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.0952 1.6965 -1.2126 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0076 -1.2125 -0.0005 8 1 3.0876 -1.2125 -0.0001 9 6 1.3009 -2.4367 -0.0005 10 6 2.0093 -3.6523 -0.0016 11 6 1.3060 -4.8428 -0.0022 12 6 -0.0803 -4.7973 0.0042 13 6 -0.7282 -3.5573 -0.0003 14 6 -2.2101 -3.5049 0.0004 15 6 -2.9372 -4.6763 0.1045 16 7 -4.2772 -4.6842 0.1105 17 1 -4.7518 -5.5269 0.1856 18 6 -4.9846 -3.5138 0.0114 19 7 -6.2694 -3.2073 -0.0106 20 6 -6.4423 -1.8898 -0.1238 21 6 -5.2465 -1.2479 -0.1827 22 6 -4.2508 -2.2472 -0.1001 23 6 -2.8616 -2.2682 -0.1023 24 7 -0.0345 -2.4313 0.0001 25 1 -0.4850 0.8400 -0.0004 26 1 3.0893 -3.6556 -0.0019 27 1 1.8258 -5.7895 -0.0026 28 1 -0.6550 -5.7117 0.0083 29 1 -2.4084 -5.6143 0.1887 30 1 -7.4036 -1.3991 -0.1624 31 1 -5.0881 -0.1835 -0.2746 32 1 -2.2960 -1.3516 -0.1819 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240389632.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:42 Heat of formation + Delta-G solvation = 117.092888 kcal Electronic energy + Delta-G solvation = -18539.550291 eV Core-core repulsion = 15659.004195 eV Total energy + Delta-G solvation = -2880.546096 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.93831 -38.53288 -37.47310 -34.14366 -33.36817 -30.68033 -30.59808 -28.46743 -28.17667 -25.69480 -23.70861 -22.93411 -21.40902 -20.99686 -19.74856 -17.64516 -17.21201 -16.47045 -16.03632 -15.44142 -14.86223 -14.74066 -14.28376 -14.00760 -13.86266 -12.91000 -12.61374 -12.58563 -12.31951 -11.93759 -11.47138 -11.31206 -11.27414 -11.15255 -10.87414 -10.58752 -10.32448 -10.10312 -9.46647 -9.04957 -8.48596 -8.05207 -7.79638 -7.44487 -7.04632 -6.56975 -4.67512 0.69087 1.57676 2.71332 2.71813 2.95423 3.03203 3.04292 3.12767 3.85436 3.85766 4.03360 4.56484 4.66650 4.91129 5.03529 5.34126 5.58755 5.76278 5.76505 5.93464 6.15996 6.27397 6.32283 6.34996 6.58866 6.64126 6.78989 6.92149 7.00117 7.07615 7.17869 7.32934 7.38909 7.54273 7.57962 7.85942 8.06606 8.49545 8.51099 8.75752 9.87473 10.15976 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019198 B = 0.006394 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.139084 B = 4378.087184 C = 5823.338997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.071 3.929 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.426 4.426 8 H 0.085 0.915 9 C 0.260 3.740 10 C -0.273 4.273 11 C -0.054 4.054 12 C -0.314 4.314 13 C 0.194 3.806 14 C -0.115 4.115 15 C 0.144 3.856 16 N -0.498 5.498 17 H 0.419 0.581 18 C 0.233 3.767 19 N -0.549 5.549 20 C 0.038 3.962 21 C -0.229 4.229 22 C -0.178 4.178 23 C 0.079 3.921 24 N -0.473 5.473 25 H 0.275 0.725 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.179 0.821 30 H 0.151 0.849 31 H 0.132 0.868 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.589 -4.989 0.105 6.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.155 4.155 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.457 4.457 8 H 0.103 0.897 9 C 0.135 3.865 10 C -0.296 4.296 11 C -0.078 4.078 12 C -0.338 4.338 13 C 0.049 3.951 14 C -0.122 4.122 15 C 0.003 3.997 16 N -0.091 5.091 17 H 0.255 0.745 18 C -0.014 4.014 19 N -0.270 5.270 20 C -0.106 4.106 21 C -0.252 4.252 22 C -0.186 4.186 23 C 0.055 3.945 24 N -0.186 5.186 25 H 0.087 0.913 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.196 0.804 30 H 0.168 0.832 31 H 0.150 0.850 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.065 -4.605 0.162 6.847 hybrid contribution 1.339 0.080 -0.012 1.341 sum -3.726 -4.525 0.150 5.863 Atomic orbital electron populations 1.70014 1.07303 1.28199 1.28318 1.26038 0.94930 1.01150 0.93362 0.86349 0.80110 0.80271 0.79930 1.18903 1.20090 1.18909 1.19610 0.94359 0.89311 1.42418 0.89679 1.18458 0.87605 0.92062 0.88372 1.21786 0.98888 0.93502 1.15426 1.20748 0.93728 0.96731 0.96547 1.21046 0.94725 0.96126 1.21892 1.19222 0.89966 0.90356 0.95594 1.18224 0.93210 0.91091 1.09640 1.22250 0.80901 1.01221 0.95303 1.40151 1.05466 1.08682 1.54811 0.74469 1.20440 0.91964 0.84805 1.04155 1.69452 1.13878 1.16685 1.26950 1.22120 0.97537 0.88825 1.02121 1.21293 0.92322 0.98155 1.13442 1.20224 0.93398 0.93549 1.11413 1.22060 0.91904 0.99600 0.80932 1.68655 1.07566 1.24946 1.17454 0.91325 0.88161 0.88374 0.88766 0.80376 0.83188 0.85011 0.81503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.56 11.12 55.55 0.62 -16.94 16 2 C 0.07 1.68 5.50 -17.35 -0.10 1.59 16 3 Si 0.91 17.63 29.56 -169.99 -5.02 12.61 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.43 -10.63 9.14 -37.73 -0.34 -10.98 16 8 H 0.09 1.98 7.85 -52.49 -0.41 1.57 16 9 C 0.26 6.60 6.55 -85.01 -0.56 6.04 16 10 C -0.27 -6.18 9.83 -38.64 -0.38 -6.56 16 11 C -0.05 -1.08 10.15 -39.40 -0.40 -1.48 16 12 C -0.31 -6.13 9.45 -38.79 -0.37 -6.50 16 13 C 0.19 4.22 6.73 -82.93 -0.56 3.66 16 14 C -0.11 -2.15 5.86 -105.03 -0.62 -2.76 16 15 C 0.14 2.02 10.52 -16.59 -0.17 1.85 16 16 N -0.50 -6.76 5.28 -10.42 -0.05 -6.82 16 17 H 0.42 4.01 8.91 -40.82 -0.36 3.64 16 18 C 0.23 4.19 8.64 -153.96 -1.33 2.86 16 19 N -0.55 -10.35 11.17 -11.11 -0.12 -10.48 16 20 C 0.04 0.67 11.69 -17.75 -0.21 0.47 16 21 C -0.23 -4.21 10.98 -39.27 -0.43 -4.64 16 22 C -0.18 -3.47 6.41 -105.01 -0.67 -4.14 16 23 C 0.08 1.60 9.68 -38.60 -0.37 1.22 16 24 N -0.47 -11.85 6.92 -7.68 -0.05 -11.90 16 25 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 26 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 27 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.09 1.46 6.13 -52.49 -0.32 1.13 16 29 H 0.18 1.82 6.03 -52.48 -0.32 1.51 16 30 H 0.15 2.17 8.06 -52.48 -0.42 1.75 16 31 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 32 H 0.17 3.69 7.23 -52.49 -0.38 3.31 16 LS Contribution 283.17 15.07 4.27 4.27 Total: -1.00 -29.98 283.17 -9.50 -39.48 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -2.62 Total: 9.17 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -6.51 Total: -19.38 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.39 Total: -46.14 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.02 Total: 12.61 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.98 -9.50 -39.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240389632.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.570 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds