Wall clock time and date at job start Mon Mar 30 2020 00:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30756 * 1 3 3 Si 1.86802 * 119.99640 * 2 1 4 4 H 1.48508 * 109.47003 * 240.00186 * 3 2 1 5 5 H 1.48494 * 109.47229 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46969 * 120.00257 * 3 2 1 7 7 C 1.40007 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00003 * 180.02562 * 7 2 1 9 9 C 1.41355 * 120.00296 * 359.97438 * 7 2 1 10 10 C 1.40693 * 119.77083 * 179.97438 * 9 7 2 11 11 C 1.38274 * 119.19616 * 180.02562 * 10 9 7 12 12 C 1.38705 * 118.69104 * 359.72626 * 11 10 9 13 13 C 1.39902 * 119.46554 * 0.53208 * 12 11 10 14 14 C 1.48287 * 119.61157 * 179.72909 * 13 12 11 15 15 C 1.38261 * 119.71228 * 4.73134 * 14 13 12 16 16 N 1.34004 * 122.08480 * 179.97438 * 15 14 13 17 17 H 0.97003 * 119.64873 * 180.02562 * 16 15 14 18 18 C 1.37113 * 120.70131 * 0.02882 * 16 15 14 19 19 N 1.32102 * 134.51065 * 179.97438 * 18 16 15 20 20 C 1.33355 * 110.90195 * 179.97438 * 19 18 16 21 21 C 1.35845 * 110.88027 * 359.97438 * 20 19 18 22 22 C 1.41312 * 106.46985 * 0.02562 * 21 20 19 23 23 C 1.38936 * 135.65662 * 180.02562 * 22 21 20 24 24 N 1.32253 * 120.77825 * 359.46136 * 13 12 11 25 25 H 0.96998 * 119.99767 * 0.02562 * 1 2 3 26 26 H 1.08009 * 120.40687 * 0.03815 * 10 9 7 27 27 H 1.07998 * 120.65816 * 180.02562 * 11 10 9 28 28 H 1.08000 * 120.26806 * 180.26666 * 12 11 10 29 29 H 1.08003 * 118.95658 * 0.28122 * 15 14 13 30 30 H 1.08004 * 124.55949 * 180.02562 * 20 19 18 31 31 H 1.07998 * 126.76447 * 180.02562 * 21 20 19 32 32 H 1.08001 * 120.72663 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.0952 1.6965 -1.2126 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0076 -1.2125 -0.0005 8 1 3.0876 -1.2125 -0.0001 9 6 1.3009 -2.4367 -0.0005 10 6 2.0093 -3.6523 -0.0016 11 6 1.3060 -4.8428 -0.0022 12 6 -0.0803 -4.7973 0.0042 13 6 -0.7282 -3.5573 -0.0003 14 6 -2.2101 -3.5049 0.0004 15 6 -2.9372 -4.6763 0.1045 16 7 -4.2772 -4.6842 0.1105 17 1 -4.7518 -5.5269 0.1856 18 6 -4.9846 -3.5138 0.0114 19 7 -6.2694 -3.2073 -0.0106 20 6 -6.4423 -1.8898 -0.1238 21 6 -5.2465 -1.2479 -0.1827 22 6 -4.2508 -2.2472 -0.1001 23 6 -2.8616 -2.2682 -0.1023 24 7 -0.0345 -2.4313 0.0001 25 1 -0.4850 0.8400 -0.0004 26 1 3.0893 -3.6556 -0.0019 27 1 1.8258 -5.7895 -0.0026 28 1 -0.6550 -5.7117 0.0083 29 1 -2.4084 -5.6143 0.1887 30 1 -7.4036 -1.3991 -0.1624 31 1 -5.0881 -0.1835 -0.2746 32 1 -2.2960 -1.3516 -0.1819 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240389632.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:42 Heat of formation + Delta-G solvation = 99.898560 kcal Electronic energy + Delta-G solvation = -18540.295893 eV Core-core repulsion = 15659.004195 eV Total energy + Delta-G solvation = -2881.291698 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.28695 -40.12993 -38.86217 -35.74015 -34.91137 -32.32956 -32.18334 -29.92318 -29.62251 -27.37489 -25.09165 -24.43579 -23.03192 -22.42766 -21.20807 -19.33757 -18.59216 -17.84110 -17.37995 -17.07507 -16.38402 -16.05809 -15.89108 -15.63889 -15.31868 -14.42526 -14.27657 -14.03681 -13.74991 -13.31530 -12.97121 -12.87371 -12.73318 -12.68582 -12.59650 -12.14867 -11.80688 -11.74306 -11.14273 -10.48513 -10.12157 -9.70014 -9.48265 -8.82939 -8.51796 -8.28075 -6.48279 -0.64535 0.13040 1.08639 1.34807 1.41456 1.50505 1.52208 1.56816 2.22992 2.45616 2.57706 2.96073 3.37580 3.48029 3.80985 3.94152 4.02269 4.26920 4.38015 4.46933 4.71003 4.86219 4.90908 4.92546 4.97336 5.14848 5.22644 5.44280 5.45392 5.55472 5.70800 5.83064 5.91504 5.94873 6.21247 6.26465 6.29693 6.77254 6.98926 7.11587 8.18921 8.45016 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019198 B = 0.006394 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.139084 B = 4378.087184 C = 5823.338997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.030 3.970 3 Si 0.979 3.021 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.470 4.470 8 H 0.086 0.914 9 C 0.228 3.772 10 C -0.299 4.299 11 C -0.052 4.052 12 C -0.299 4.299 13 C 0.174 3.826 14 C -0.149 4.149 15 C 0.197 3.803 16 N -0.471 5.471 17 H 0.445 0.555 18 C 0.223 3.777 19 N -0.559 5.559 20 C 0.032 3.968 21 C -0.250 4.250 22 C -0.208 4.208 23 C 0.064 3.936 24 N -0.509 5.509 25 H 0.276 0.724 26 H 0.106 0.894 27 H 0.140 0.860 28 H 0.149 0.851 29 H 0.235 0.765 30 H 0.178 0.822 31 H 0.137 0.863 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.245 -7.974 0.268 9.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.192 4.192 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.501 4.501 8 H 0.104 0.896 9 C 0.102 3.898 10 C -0.322 4.322 11 C -0.076 4.076 12 C -0.321 4.321 13 C 0.030 3.970 14 C -0.155 4.155 15 C 0.053 3.947 16 N -0.065 5.065 17 H 0.286 0.714 18 C -0.024 4.024 19 N -0.281 5.281 20 C -0.112 4.112 21 C -0.273 4.273 22 C -0.215 4.215 23 C 0.039 3.961 24 N -0.223 5.223 25 H 0.087 0.913 26 H 0.124 0.876 27 H 0.157 0.843 28 H 0.167 0.833 29 H 0.251 0.749 30 H 0.195 0.805 31 H 0.154 0.846 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.761 -7.637 0.327 9.572 hybrid contribution 1.485 0.766 -0.060 1.672 sum -4.276 -6.871 0.266 8.098 Atomic orbital electron populations 1.70141 1.08573 1.28829 1.29820 1.26832 0.95672 1.04104 0.92628 0.85300 0.78693 0.76047 0.79925 1.18481 1.19674 1.18477 1.19907 0.94679 0.90505 1.45032 0.89568 1.18887 0.88391 0.93361 0.89157 1.21979 0.99482 0.93979 1.16731 1.21242 0.94335 0.97350 0.94695 1.21607 0.94973 0.97125 1.18434 1.19787 0.91388 0.90701 0.95163 1.18198 0.92268 0.92279 1.12758 1.22791 0.80676 1.01276 0.89987 1.40225 1.05340 1.08657 1.52327 0.71367 1.20557 0.91624 0.85701 1.04522 1.69473 1.14104 1.17121 1.27355 1.22559 0.98415 0.88688 1.01538 1.21544 0.92861 0.98670 1.14211 1.20385 0.93227 0.95096 1.12814 1.21836 0.92215 0.99499 0.82561 1.68593 1.07758 1.27353 1.18592 0.91318 0.87622 0.84254 0.83328 0.74908 0.80460 0.84556 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.25 11.12 21.83 0.24 -39.01 16 2 C 0.03 1.47 5.50 85.28 0.47 1.94 16 3 Si 0.98 37.81 29.56 68.60 2.03 39.84 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 5 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.47 -24.71 9.14 23.47 0.21 -24.49 16 8 H 0.09 4.25 7.85 -2.91 -0.02 4.23 16 9 C 0.23 11.98 6.55 40.25 0.26 12.24 16 10 C -0.30 -13.54 9.83 22.88 0.22 -13.32 16 11 C -0.05 -1.95 10.15 22.39 0.23 -1.72 16 12 C -0.30 -10.46 9.45 22.78 0.22 -10.25 16 13 C 0.17 7.39 6.73 42.16 0.28 7.67 16 14 C -0.15 -5.36 5.86 -20.13 -0.12 -5.48 16 15 C 0.20 4.58 10.52 84.37 0.89 5.47 16 16 N -0.47 -10.77 5.28 -186.89 -0.99 -11.76 16 17 H 0.44 6.02 8.91 -92.71 -0.83 5.19 16 18 C 0.22 7.57 8.64 135.81 1.17 8.74 16 19 N -0.56 -20.15 11.17 -189.06 -2.11 -22.26 16 20 C 0.03 1.11 11.69 83.91 0.98 2.09 16 21 C -0.25 -9.38 10.98 22.47 0.25 -9.14 16 22 C -0.21 -8.17 6.41 -20.11 -0.13 -8.30 16 23 C 0.06 2.65 9.68 22.90 0.22 2.87 16 24 N -0.51 -26.38 6.92 -178.21 -1.23 -27.61 16 25 H 0.28 13.32 8.29 -92.71 -0.77 12.55 16 26 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 27 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 28 H 0.15 3.46 6.13 -2.91 -0.02 3.44 16 29 H 0.23 2.85 6.03 -2.91 -0.02 2.83 16 30 H 0.18 4.89 8.06 -2.91 -0.02 4.87 16 31 H 0.14 4.75 8.06 -2.91 -0.02 4.72 16 32 H 0.13 6.40 7.23 -2.91 -0.02 6.38 16 Total: -1.00 -70.82 283.17 3.45 -67.37 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.35 Total: 25.09 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 5.16 Total: -31.66 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -4.09 Total: -100.63 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -70.82 3.45 -67.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240389632.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.266 kcal (2) G-P(sol) polarization free energy of solvation -70.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds