Wall clock time and date at job start Mon Mar 30 2020 00:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86806 * 119.99848 * 2 1 4 4 H 1.48493 * 109.47204 * 269.99985 * 3 2 1 5 5 H 1.48499 * 109.46768 * 30.00608 * 3 2 1 6 6 H 1.48502 * 109.46611 * 150.00130 * 3 2 1 7 7 C 1.40029 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00404 * 165.67683 * 7 2 1 9 9 C 1.40876 * 119.99427 * 345.67735 * 7 2 1 10 10 C 1.41100 * 120.72259 * 332.74469 * 9 7 2 11 11 C 1.36890 * 118.40340 * 180.02562 * 10 9 7 12 12 C 1.38853 * 119.80504 * 0.26051 * 11 10 9 13 13 N 1.31752 * 121.51065 * 359.44474 * 12 11 10 14 14 C 1.32617 * 121.71107 * 0.58746 * 13 12 11 15 15 C 1.47767 * 119.99438 * 179.70966 * 14 13 12 16 16 C 1.38617 * 119.74652 * 136.14995 * 15 14 13 17 17 N 1.33894 * 122.03325 * 179.97438 * 16 15 14 18 18 H 0.96997 * 119.62403 * 179.97438 * 17 16 15 19 19 C 1.37148 * 120.74073 * 359.95405 * 17 16 15 20 20 N 1.32078 * 134.45283 * 179.97438 * 19 17 16 21 21 C 1.33382 * 110.92413 * 180.02562 * 20 19 17 22 22 C 1.35822 * 110.88568 * 0.02562 * 21 20 19 23 23 C 1.41392 * 106.45891 * 359.97438 * 22 21 20 24 24 C 1.38828 * 135.63144 * 180.26224 * 23 22 21 25 25 H 0.97002 * 119.99898 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.80005 * 0.02562 * 10 9 7 27 27 H 1.07996 * 120.09676 * 179.97438 * 11 10 9 28 28 H 1.07998 * 119.24553 * 179.71840 * 12 11 10 29 29 H 1.07997 * 118.98495 * 359.97171 * 16 15 14 30 30 H 1.07999 * 124.55962 * 180.02562 * 21 20 19 31 31 H 1.08001 * 126.77108 * 179.97438 * 22 21 20 32 32 H 1.07995 * 120.73100 * 359.95730 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.4895 2.0465 -1.4000 5 1 1.4395 2.6526 0.7002 6 1 3.5396 1.4401 0.7000 7 6 2.0083 -1.2126 -0.0005 8 1 3.0631 -1.2271 -0.2319 9 6 1.3367 -2.4138 0.3007 10 6 0.1927 -2.4124 1.1268 11 6 -0.4225 -3.6069 1.3890 12 6 0.0882 -4.7796 0.8487 13 7 1.1535 -4.7738 0.0735 14 6 1.7965 -3.6514 -0.2193 15 6 2.9915 -3.6897 -1.0877 16 6 3.1441 -2.7440 -2.0896 17 7 4.2083 -2.7356 -2.9021 18 1 4.2794 -2.0575 -3.5921 19 6 5.1991 -3.6745 -2.7693 20 7 6.3339 -3.9172 -3.4000 21 6 6.9536 -4.9754 -2.8752 22 6 6.2364 -5.4952 -1.8456 23 6 5.0777 -4.6947 -1.7202 24 6 3.9670 -4.6799 -0.8874 25 1 -0.4850 0.8401 0.0004 26 1 -0.1884 -1.4912 1.5421 27 1 -1.2997 -3.6375 2.0182 28 1 -0.4016 -5.7174 1.0652 29 1 2.3810 -1.9908 -2.2190 30 1 7.8986 -5.3664 -3.2224 31 1 6.4993 -6.3511 -1.2417 32 1 3.8539 -5.4159 -0.1052 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240390592.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:16 Heat of formation + Delta-G solvation = 103.920740 kcal Electronic energy + Delta-G solvation = -18755.812623 eV Core-core repulsion = 15874.695339 eV Total energy + Delta-G solvation = -2881.117283 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81840 -38.71807 -37.36860 -34.38763 -33.66734 -30.82612 -30.71026 -28.23485 -28.00937 -25.91154 -23.58733 -22.73421 -21.64867 -21.01694 -19.68567 -17.64494 -17.11245 -16.64993 -15.88676 -15.66520 -15.16376 -14.69170 -14.33233 -14.21615 -13.77477 -12.91070 -12.68904 -12.43083 -12.31324 -11.83937 -11.72033 -11.66839 -11.38559 -11.25417 -11.19245 -10.80573 -10.20628 -10.01879 -9.65142 -8.95630 -8.53742 -8.28138 -7.99627 -7.38984 -7.20766 -7.01481 -4.78016 0.80301 1.82641 2.46673 2.75829 2.85310 2.88657 2.94544 2.97921 3.61731 3.92508 4.09695 4.32291 4.80013 5.04338 5.31274 5.34253 5.56134 5.61636 5.85106 6.07013 6.15253 6.19041 6.36150 6.49048 6.53942 6.67373 6.75505 6.82012 6.92421 7.01466 7.17392 7.42872 7.49552 7.57928 7.67336 7.68809 8.12304 8.36480 8.42988 8.60893 9.35337 9.76551 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.017391 B = 0.007461 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.614288 B = 3751.715307 C = 5109.564557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.457 4.457 8 H 0.087 0.913 9 C 0.086 3.914 10 C -0.126 4.126 11 C -0.148 4.148 12 C -0.024 4.024 13 N -0.453 5.453 14 C 0.025 3.975 15 C -0.078 4.078 16 C 0.165 3.835 17 N -0.494 5.494 18 H 0.419 0.581 19 C 0.232 3.768 20 N -0.553 5.553 21 C 0.041 3.959 22 C -0.243 4.243 23 C -0.175 4.175 24 C 0.052 3.948 25 H 0.287 0.713 26 H 0.127 0.873 27 H 0.101 0.899 28 H 0.124 0.876 29 H 0.191 0.809 30 H 0.148 0.852 31 H 0.128 0.872 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.878 0.000 -1.191 2.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.486 4.486 8 H 0.104 0.896 9 C 0.082 3.918 10 C -0.152 4.152 11 C -0.168 4.168 12 C -0.185 4.185 13 N -0.161 5.161 14 C -0.113 4.113 15 C -0.084 4.084 16 C 0.023 3.977 17 N -0.086 5.086 18 H 0.256 0.744 19 C -0.014 4.014 20 N -0.274 5.274 21 C -0.104 4.104 22 C -0.267 4.267 23 C -0.182 4.182 24 C 0.026 3.974 25 H 0.099 0.901 26 H 0.145 0.855 27 H 0.119 0.881 28 H 0.141 0.859 29 H 0.208 0.792 30 H 0.166 0.834 31 H 0.146 0.854 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.446 -0.114 -2.377 3.413 hybrid contribution -0.431 1.392 0.913 1.720 sum 2.015 1.278 -1.464 2.799 Atomic orbital electron populations 1.69745 1.07639 1.30110 1.33195 1.25973 0.94812 1.01500 0.92082 0.86312 0.80845 0.80212 0.79706 1.19102 1.19672 1.18118 1.19550 0.97035 0.90446 1.41537 0.89553 1.18316 0.91887 0.92356 0.89254 1.21401 0.97864 0.97056 0.98832 1.21469 0.99883 0.94458 1.01024 1.21699 0.97042 0.96646 1.03156 1.67009 1.07066 1.30280 1.11698 1.19003 0.98228 0.89765 1.04326 1.17731 0.96266 0.96718 0.97682 1.22725 0.87798 0.98675 0.88477 1.40335 1.15345 1.24785 1.28150 0.74431 1.20411 0.91801 0.91726 0.97437 1.69440 1.05992 1.20516 1.31452 1.22067 0.99142 0.93601 0.95607 1.21186 0.96750 1.04010 1.04719 1.20075 0.98291 0.99971 0.99883 1.21561 0.88582 0.93596 0.93623 0.90148 0.85492 0.88100 0.85895 0.79195 0.83424 0.85438 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.01 10.97 55.55 0.61 -16.40 16 2 C 0.08 1.60 5.21 -17.32 -0.09 1.51 16 3 Si 0.91 15.93 29.58 -169.99 -5.03 10.90 16 4 H -0.27 -4.56 7.11 56.52 0.40 -4.16 16 5 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 6 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 7 C -0.46 -9.90 6.72 -37.91 -0.25 -10.15 16 8 H 0.09 1.81 6.42 -52.49 -0.34 1.47 16 9 C 0.09 1.97 5.53 -106.41 -0.59 1.38 16 10 C -0.13 -2.83 8.72 -38.99 -0.34 -3.17 16 11 C -0.15 -3.05 10.03 -39.84 -0.40 -3.45 16 12 C -0.02 -0.51 11.16 -17.36 -0.19 -0.70 16 13 N -0.45 -10.06 10.15 -9.17 -0.09 -10.15 16 14 C 0.03 0.56 6.41 -82.23 -0.53 0.03 16 15 C -0.08 -1.53 5.25 -105.03 -0.55 -2.08 16 16 C 0.16 2.80 8.90 -16.51 -0.15 2.65 16 17 N -0.49 -7.78 5.27 -10.35 -0.05 -7.83 16 18 H 0.42 5.10 8.91 -40.82 -0.36 4.73 16 19 C 0.23 4.41 8.64 -153.93 -1.33 3.08 16 20 N -0.55 -10.87 11.17 -11.10 -0.12 -11.00 16 21 C 0.04 0.74 11.69 -17.74 -0.21 0.53 16 22 C -0.24 -4.41 10.99 -39.25 -0.43 -4.84 16 23 C -0.17 -3.39 6.41 -105.00 -0.67 -4.06 16 24 C 0.05 0.99 9.80 -38.54 -0.38 0.61 16 25 H 0.29 5.70 8.30 -40.82 -0.34 5.36 16 26 H 0.13 2.91 6.34 -52.49 -0.33 2.58 16 27 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 28 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 29 H 0.19 3.05 6.64 -52.49 -0.35 2.71 16 30 H 0.15 2.18 8.06 -52.49 -0.42 1.76 16 31 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.13 2.46 8.06 -52.49 -0.42 2.03 16 LS Contribution 280.81 15.07 4.23 4.23 Total: -1.00 -27.14 280.81 -9.20 -36.34 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -2.63 Total: 12.58 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -6.11 Total: -18.67 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.34 Total: -45.38 kcal Atomic # 14 Polarization: 15.93 SS G_CDS: -5.03 Total: 10.90 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.14 -9.20 -36.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240390592.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.264 kcal (2) G-P(sol) polarization free energy of solvation -27.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds