Wall clock time and date at job start Mon Mar 30 2020 00:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86806 * 119.99848 * 2 1 4 4 H 1.48493 * 109.47204 * 269.99985 * 3 2 1 5 5 H 1.48499 * 109.46768 * 30.00608 * 3 2 1 6 6 H 1.48502 * 109.46611 * 150.00130 * 3 2 1 7 7 C 1.40029 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00404 * 165.67683 * 7 2 1 9 9 C 1.40876 * 119.99427 * 345.67735 * 7 2 1 10 10 C 1.41100 * 120.72259 * 332.74469 * 9 7 2 11 11 C 1.36890 * 118.40340 * 180.02562 * 10 9 7 12 12 C 1.38853 * 119.80504 * 0.26051 * 11 10 9 13 13 N 1.31752 * 121.51065 * 359.44474 * 12 11 10 14 14 C 1.32617 * 121.71107 * 0.58746 * 13 12 11 15 15 C 1.47767 * 119.99438 * 179.70966 * 14 13 12 16 16 C 1.38617 * 119.74652 * 136.14995 * 15 14 13 17 17 N 1.33894 * 122.03325 * 179.97438 * 16 15 14 18 18 H 0.96997 * 119.62403 * 179.97438 * 17 16 15 19 19 C 1.37148 * 120.74073 * 359.95405 * 17 16 15 20 20 N 1.32078 * 134.45283 * 179.97438 * 19 17 16 21 21 C 1.33382 * 110.92413 * 180.02562 * 20 19 17 22 22 C 1.35822 * 110.88568 * 0.02562 * 21 20 19 23 23 C 1.41392 * 106.45891 * 359.97438 * 22 21 20 24 24 C 1.38828 * 135.63144 * 180.26224 * 23 22 21 25 25 H 0.97002 * 119.99898 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.80005 * 0.02562 * 10 9 7 27 27 H 1.07996 * 120.09676 * 179.97438 * 11 10 9 28 28 H 1.07998 * 119.24553 * 179.71840 * 12 11 10 29 29 H 1.07997 * 118.98495 * 359.97171 * 16 15 14 30 30 H 1.07999 * 124.55962 * 180.02562 * 21 20 19 31 31 H 1.08001 * 126.77108 * 179.97438 * 22 21 20 32 32 H 1.07995 * 120.73100 * 359.95730 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.4895 2.0465 -1.4000 5 1 1.4395 2.6526 0.7002 6 1 3.5396 1.4401 0.7000 7 6 2.0083 -1.2126 -0.0005 8 1 3.0631 -1.2271 -0.2319 9 6 1.3367 -2.4138 0.3007 10 6 0.1927 -2.4124 1.1268 11 6 -0.4225 -3.6069 1.3890 12 6 0.0882 -4.7796 0.8487 13 7 1.1535 -4.7738 0.0735 14 6 1.7965 -3.6514 -0.2193 15 6 2.9915 -3.6897 -1.0877 16 6 3.1441 -2.7440 -2.0896 17 7 4.2083 -2.7356 -2.9021 18 1 4.2794 -2.0575 -3.5921 19 6 5.1991 -3.6745 -2.7693 20 7 6.3339 -3.9172 -3.4000 21 6 6.9536 -4.9754 -2.8752 22 6 6.2364 -5.4952 -1.8456 23 6 5.0777 -4.6947 -1.7202 24 6 3.9670 -4.6799 -0.8874 25 1 -0.4850 0.8401 0.0004 26 1 -0.1884 -1.4912 1.5421 27 1 -1.2997 -3.6375 2.0182 28 1 -0.4016 -5.7174 1.0652 29 1 2.3810 -1.9908 -2.2190 30 1 7.8986 -5.3664 -3.2224 31 1 6.4993 -6.3511 -1.2417 32 1 3.8539 -5.4159 -0.1052 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240390592.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:16 Heat of formation + Delta-G solvation = 90.119654 kcal Electronic energy + Delta-G solvation = -18756.411083 eV Core-core repulsion = 15874.695339 eV Total energy + Delta-G solvation = -2881.715743 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.23308 -40.31424 -38.79679 -36.00150 -35.13244 -32.47620 -32.26027 -29.64373 -29.51498 -27.53138 -25.02344 -24.26325 -23.27596 -22.47744 -21.16063 -19.26799 -18.54681 -18.09051 -17.36867 -17.15026 -16.68683 -16.21593 -15.82474 -15.70571 -15.23191 -14.39391 -14.28476 -13.89549 -13.83028 -13.30722 -13.23479 -13.18389 -12.91483 -12.74460 -12.60366 -12.24337 -11.73757 -11.56196 -11.20958 -10.41437 -10.19505 -9.94107 -9.61308 -8.86402 -8.71549 -8.51893 -6.43399 -0.60787 0.30613 0.90308 1.18289 1.42422 1.48703 1.54372 1.57645 2.15595 2.51223 2.62719 2.73662 3.43434 3.55921 3.72870 3.93669 4.08447 4.24224 4.39947 4.53415 4.69765 4.74121 4.85066 4.95308 5.05016 5.14502 5.18651 5.34314 5.42193 5.51663 5.79071 5.86395 5.95179 6.01274 6.03586 6.32603 6.48025 6.73398 6.78322 7.19166 7.70398 8.21122 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.017391 B = 0.007461 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.614288 B = 3751.715307 C = 5109.564557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.049 3.951 3 Si 0.967 3.033 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.265 1.265 7 C -0.468 4.468 8 H 0.089 0.911 9 C 0.063 3.937 10 C -0.149 4.149 11 C -0.147 4.147 12 C -0.034 4.034 13 N -0.470 5.470 14 C 0.018 3.982 15 C -0.101 4.101 16 C 0.188 3.812 17 N -0.475 5.475 18 H 0.437 0.563 19 C 0.216 3.784 20 N -0.569 5.569 21 C 0.031 3.969 22 C -0.249 4.249 23 C -0.197 4.197 24 C 0.050 3.950 25 H 0.294 0.706 26 H 0.117 0.883 27 H 0.128 0.872 28 H 0.150 0.850 29 H 0.203 0.797 30 H 0.178 0.822 31 H 0.147 0.853 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.386 0.522 -1.691 2.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.169 4.169 3 Si 0.788 3.212 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.190 1.190 7 C -0.497 4.497 8 H 0.107 0.893 9 C 0.059 3.941 10 C -0.175 4.175 11 C -0.167 4.167 12 C -0.194 4.194 13 N -0.178 5.178 14 C -0.121 4.121 15 C -0.107 4.107 16 C 0.044 3.956 17 N -0.068 5.068 18 H 0.278 0.722 19 C -0.029 4.029 20 N -0.291 5.291 21 C -0.113 4.113 22 C -0.273 4.273 23 C -0.204 4.204 24 C 0.025 3.975 25 H 0.105 0.895 26 H 0.135 0.865 27 H 0.146 0.854 28 H 0.168 0.832 29 H 0.219 0.781 30 H 0.195 0.805 31 H 0.165 0.835 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.957 0.405 -2.901 4.162 hybrid contribution -0.622 1.183 1.076 1.716 sum 2.335 1.587 -1.825 3.362 Atomic orbital electron populations 1.69784 1.08811 1.31222 1.33436 1.26588 0.95268 1.03800 0.91259 0.85392 0.79056 0.76659 0.80068 1.17799 1.19555 1.18955 1.19670 0.97138 0.90755 1.42143 0.89292 1.18609 0.92475 0.93211 0.89818 1.21459 0.98765 0.97444 0.99854 1.21734 1.00403 0.93770 1.00825 1.22197 0.96759 0.97852 1.02597 1.67073 1.07760 1.30582 1.12415 1.19287 0.98776 0.89541 1.04447 1.17735 0.96071 0.98107 0.98773 1.22733 0.87796 0.97614 0.87458 1.40283 1.14156 1.24422 1.27969 0.72233 1.20620 0.92277 0.92438 0.97614 1.69451 1.06339 1.21326 1.31986 1.22584 1.00132 0.93151 0.95461 1.21520 0.96287 1.04460 1.04992 1.20327 0.98855 1.00865 1.00391 1.21525 0.88660 0.93604 0.93757 0.89492 0.86515 0.85420 0.83237 0.78079 0.80540 0.83481 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -34.84 10.97 21.84 0.24 -34.60 16 2 C 0.05 2.01 5.21 85.28 0.44 2.45 16 3 Si 0.97 31.65 29.58 68.60 2.03 33.68 16 4 H -0.25 -7.78 7.11 99.48 0.71 -7.07 16 5 H -0.27 -8.77 7.11 99.48 0.71 -8.06 16 6 H -0.27 -8.98 7.11 99.48 0.71 -8.27 16 7 C -0.47 -20.16 6.72 23.35 0.16 -20.01 16 8 H 0.09 3.68 6.42 -2.91 -0.02 3.66 16 9 C 0.06 2.90 5.53 -21.02 -0.12 2.78 16 10 C -0.15 -6.76 8.72 22.66 0.20 -6.57 16 11 C -0.15 -5.98 10.03 22.10 0.22 -5.75 16 12 C -0.03 -1.37 11.16 84.85 0.95 -0.42 16 13 N -0.47 -20.80 10.15 -182.93 -1.86 -22.65 16 14 C 0.02 0.80 6.41 42.45 0.27 1.07 16 15 C -0.10 -3.93 5.25 -20.13 -0.11 -4.04 16 16 C 0.19 6.18 8.90 84.47 0.75 6.93 16 17 N -0.47 -14.23 5.27 -186.65 -0.98 -15.21 16 18 H 0.44 9.75 8.91 -92.71 -0.83 8.92 16 19 C 0.22 7.94 8.64 135.82 1.17 9.12 16 20 N -0.57 -21.53 11.17 -189.02 -2.11 -23.64 16 21 C 0.03 1.07 11.69 83.90 0.98 2.05 16 22 C -0.25 -8.71 10.99 22.49 0.25 -8.46 16 23 C -0.20 -7.48 6.41 -20.11 -0.13 -7.61 16 24 C 0.05 1.90 9.80 22.95 0.22 2.13 16 25 H 0.29 11.50 8.30 -92.71 -0.77 10.74 16 26 H 0.12 5.44 6.34 -2.91 -0.02 5.42 16 27 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 28 H 0.15 5.12 8.06 -2.91 -0.02 5.09 16 29 H 0.20 6.23 6.64 -2.91 -0.02 6.21 16 30 H 0.18 4.78 8.06 -2.91 -0.02 4.76 16 31 H 0.15 4.38 8.06 -2.91 -0.02 4.35 16 32 H 0.13 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -56.70 280.81 2.94 -53.77 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: 0.35 Total: 34.99 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 5.27 Total: -26.32 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -4.71 Total: -96.11 kcal Atomic # 14 Polarization: 31.65 SS G_CDS: 2.03 Total: 33.68 kcal Total: -56.70 2.94 -53.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240390592.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.886 kcal (2) G-P(sol) polarization free energy of solvation -56.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds