Wall clock time and date at job start Mon Mar 30 2020 00:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86803 * 119.99456 * 2 1 4 4 H 1.48504 * 109.47196 * 274.98358 * 3 2 1 5 5 H 1.48499 * 109.46996 * 34.98435 * 3 2 1 6 6 H 1.48502 * 109.47136 * 154.98335 * 3 2 1 7 7 C 1.40031 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99871 * 186.29138 * 7 2 1 9 9 C 1.41428 * 120.00103 * 6.28497 * 7 2 1 10 10 C 1.40481 * 119.77194 * 173.96761 * 9 7 2 11 11 C 1.39400 * 118.81798 * 180.29165 * 10 9 7 12 12 C 1.48186 * 120.83122 * 179.71139 * 11 10 9 13 13 C 1.39492 * 121.10342 * 309.72904 * 12 11 10 14 14 C 1.38345 * 119.24869 * 180.02562 * 13 12 11 15 15 N 1.31669 * 121.73206 * 359.97438 * 14 13 12 16 16 C 1.32628 * 121.97469 * 0.02562 * 15 14 13 17 17 N 1.37471 * 133.14261 * 180.02562 * 16 15 14 18 18 H 0.97004 * 125.00094 * 359.95438 * 17 16 15 19 19 C 1.36849 * 109.99587 * 179.97438 * 17 16 15 20 20 C 1.34371 * 109.87672 * 359.97438 * 19 17 16 21 21 C 1.40676 * 121.10257 * 129.74243 * 12 11 10 22 22 C 1.40133 * 118.33879 * 359.44730 * 11 10 9 23 23 C 1.38498 * 119.41265 * 0.26961 * 22 11 10 24 24 N 1.31478 * 121.15556 * 0.02562 * 23 22 11 25 25 H 0.96995 * 120.00686 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.58840 * 0.02562 * 10 9 7 27 27 H 1.07998 * 120.37665 * 359.97438 * 13 12 11 28 28 H 1.08000 * 119.13258 * 179.97438 * 14 13 12 29 29 H 1.08002 * 125.06483 * 179.97438 * 19 17 16 30 30 H 1.08001 * 126.56392 * 179.73599 * 20 19 17 31 31 H 1.07993 * 120.29461 * 180.24918 * 22 11 10 32 32 H 1.07997 * 119.42195 * 180.02562 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3834 2.1074 -1.3948 5 1 1.4952 2.6200 0.8027 6 1 3.5875 1.4123 0.5921 7 6 2.0076 -1.2127 -0.0005 8 1 3.0828 -1.2154 0.1020 9 6 1.3070 -2.4338 -0.1352 10 6 2.0206 -3.6371 -0.2628 11 6 1.3100 -4.8284 -0.4005 12 6 2.0175 -6.1225 -0.5448 13 6 3.0356 -6.2863 -1.4841 14 6 3.6701 -7.5114 -1.5865 15 7 3.3390 -8.5290 -0.8194 16 6 2.3803 -8.4384 0.0925 17 7 1.8563 -9.3307 0.9975 18 1 2.1471 -10.2499 1.1048 19 6 0.8637 -8.7315 1.7245 20 6 0.7117 -7.4571 1.3266 21 6 1.6845 -7.2265 0.2610 22 6 -0.0902 -4.7723 -0.3935 23 6 -0.7212 -3.5470 -0.2571 24 7 -0.0295 -2.4356 -0.1346 25 1 -0.4851 0.8399 -0.0004 26 1 3.1006 -3.6386 -0.2587 27 1 3.3246 -5.4664 -2.1248 28 1 4.4578 -7.6363 -2.3147 29 1 0.2881 -9.2114 2.5022 30 1 0.0027 -6.7416 1.7162 31 1 -0.6721 -5.6765 -0.4939 32 1 -1.8003 -3.5037 -0.2512 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240414450.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:58 Heat of formation + Delta-G solvation = 102.407185 kcal Electronic energy + Delta-G solvation = -18378.971195 eV Core-core repulsion = 15497.788279 eV Total energy + Delta-G solvation = -2881.182916 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.21875 -38.27993 -37.36392 -34.02713 -33.03957 -30.39231 -29.95278 -29.52180 -28.48986 -25.70577 -23.78507 -22.41748 -21.29317 -21.11003 -20.19409 -18.19486 -17.01297 -16.26278 -15.63367 -15.24381 -14.80096 -14.53632 -14.34907 -14.07895 -13.81425 -13.02444 -12.83096 -12.62191 -12.23109 -12.01204 -11.95513 -11.70378 -11.22335 -11.15232 -10.81576 -10.49476 -10.20435 -9.78045 -9.35453 -9.15389 -8.32419 -8.19921 -7.68690 -7.59922 -7.54577 -6.43648 -4.54915 1.17135 1.66844 2.72750 2.77510 2.95242 3.05379 3.08291 3.11730 3.18608 3.93356 4.22951 4.71192 4.76183 4.92861 5.04717 5.30355 5.45821 5.61409 5.86513 5.94746 6.05120 6.07802 6.11156 6.45013 6.57425 6.68375 6.73145 6.75421 6.89556 7.10907 7.19472 7.28639 7.46675 7.49702 7.65975 7.95245 8.20356 8.26744 8.62314 8.88156 10.07843 10.29267 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.031930 B = 0.004763 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.719203 B = 5876.964262 C = 6376.000474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.070 3.930 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.432 4.432 8 H 0.084 0.916 9 C 0.255 3.745 10 C -0.246 4.246 11 C -0.006 4.006 12 C 0.076 3.924 13 C -0.201 4.201 14 C 0.138 3.862 15 N -0.517 5.517 16 C 0.281 3.719 17 N -0.587 5.587 18 H 0.415 0.585 19 C 0.040 3.960 20 C -0.173 4.173 21 C -0.144 4.144 22 C -0.293 4.293 23 C 0.123 3.877 24 N -0.481 5.481 25 H 0.273 0.727 26 H 0.102 0.898 27 H 0.138 0.862 28 H 0.157 0.843 29 H 0.175 0.825 30 H 0.151 0.849 31 H 0.096 0.904 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.127 -11.399 1.026 11.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.156 4.156 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.463 4.463 8 H 0.102 0.898 9 C 0.130 3.870 10 C -0.269 4.269 11 C -0.012 4.012 12 C 0.067 3.933 13 C -0.223 4.223 14 C -0.026 4.026 15 N -0.231 5.231 16 C 0.049 3.951 17 N -0.194 5.194 18 H 0.251 0.749 19 C -0.085 4.085 20 C -0.199 4.199 21 C -0.151 4.151 22 C -0.316 4.316 23 C -0.042 4.042 24 N -0.194 5.194 25 H 0.084 0.916 26 H 0.120 0.880 27 H 0.155 0.845 28 H 0.175 0.825 29 H 0.192 0.808 30 H 0.169 0.831 31 H 0.115 0.885 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.942 -11.373 1.126 11.593 hybrid contribution 0.483 0.186 0.027 0.518 sum 2.425 -11.188 1.152 11.505 Atomic orbital electron populations 1.70129 1.07206 1.27817 1.28533 1.26057 0.94880 1.01067 0.93555 0.86324 0.80565 0.80918 0.79097 1.19440 1.20095 1.18492 1.19624 0.94688 0.89498 1.42524 0.89781 1.18539 0.88283 0.91575 0.88608 1.21838 0.98535 0.92480 1.14040 1.18476 0.93256 0.90095 0.99366 1.18894 0.91709 0.91871 0.90808 1.22010 0.99082 0.99326 1.01861 1.22252 0.97458 0.87547 0.95336 1.66357 1.15988 1.33796 1.06978 1.18340 0.94831 0.88643 0.93319 1.41449 1.32921 1.12984 1.32080 0.74855 1.21800 0.93612 0.94141 0.98900 1.21760 1.02430 0.96021 0.99682 1.19832 1.00792 0.93692 1.00788 1.21295 0.92946 0.98280 1.19074 1.22457 0.98812 0.88663 0.94234 1.68711 1.07432 1.26556 1.16705 0.91590 0.88028 0.84458 0.82538 0.80835 0.83085 0.88547 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.88 11.49 55.55 0.64 -18.24 16 2 C 0.07 1.76 5.49 -17.34 -0.10 1.66 16 3 Si 0.91 18.39 29.56 -169.99 -5.03 13.36 16 4 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 7 C -0.43 -11.43 9.13 -37.70 -0.34 -11.78 16 8 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 9 C 0.25 6.88 6.55 -85.02 -0.56 6.32 16 10 C -0.25 -5.97 9.41 -38.30 -0.36 -6.33 16 11 C -0.01 -0.13 5.50 -104.67 -0.58 -0.70 16 12 C 0.08 1.49 5.55 -104.42 -0.58 0.91 16 13 C -0.20 -3.45 9.68 -39.07 -0.38 -3.82 16 14 C 0.14 2.11 11.13 -17.58 -0.20 1.91 16 15 N -0.52 -8.58 10.37 -12.34 -0.13 -8.71 16 16 C 0.28 4.69 8.43 -155.68 -1.31 3.38 16 17 N -0.59 -7.46 6.05 -12.13 -0.07 -7.53 16 18 H 0.41 3.89 8.96 -40.82 -0.37 3.52 16 19 C 0.04 0.48 11.82 -16.68 -0.20 0.28 16 20 C -0.17 -2.72 10.59 -37.79 -0.40 -3.12 16 21 C -0.14 -2.63 6.08 -104.87 -0.64 -3.27 16 22 C -0.29 -6.49 9.28 -38.77 -0.36 -6.85 16 23 C 0.12 2.94 11.17 -17.61 -0.20 2.75 16 24 N -0.48 -13.10 7.87 -11.21 -0.09 -13.19 16 25 H 0.27 6.51 8.29 -40.82 -0.34 6.17 16 26 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 27 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 28 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.15 2.34 8.00 -52.49 -0.42 1.92 16 31 H 0.10 1.95 8.05 -52.49 -0.42 1.53 16 32 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 287.93 15.07 4.34 4.34 Total: -1.00 -31.29 287.93 -9.40 -40.68 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -2.87 Total: 7.94 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -6.19 Total: -18.65 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.35 Total: -47.67 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.29 -9.40 -40.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240414450.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.088 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds