Wall clock time and date at job start Mon Mar 30 2020 00:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86803 * 119.99456 * 2 1 4 4 H 1.48504 * 109.47196 * 274.98358 * 3 2 1 5 5 H 1.48499 * 109.46996 * 34.98435 * 3 2 1 6 6 H 1.48502 * 109.47136 * 154.98335 * 3 2 1 7 7 C 1.40031 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99871 * 186.29138 * 7 2 1 9 9 C 1.41428 * 120.00103 * 6.28497 * 7 2 1 10 10 C 1.40481 * 119.77194 * 173.96761 * 9 7 2 11 11 C 1.39400 * 118.81798 * 180.29165 * 10 9 7 12 12 C 1.48186 * 120.83122 * 179.71139 * 11 10 9 13 13 C 1.39492 * 121.10342 * 309.72904 * 12 11 10 14 14 C 1.38345 * 119.24869 * 180.02562 * 13 12 11 15 15 N 1.31669 * 121.73206 * 359.97438 * 14 13 12 16 16 C 1.32628 * 121.97469 * 0.02562 * 15 14 13 17 17 N 1.37471 * 133.14261 * 180.02562 * 16 15 14 18 18 H 0.97004 * 125.00094 * 359.95438 * 17 16 15 19 19 C 1.36849 * 109.99587 * 179.97438 * 17 16 15 20 20 C 1.34371 * 109.87672 * 359.97438 * 19 17 16 21 21 C 1.40676 * 121.10257 * 129.74243 * 12 11 10 22 22 C 1.40133 * 118.33879 * 359.44730 * 11 10 9 23 23 C 1.38498 * 119.41265 * 0.26961 * 22 11 10 24 24 N 1.31478 * 121.15556 * 0.02562 * 23 22 11 25 25 H 0.96995 * 120.00686 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.58840 * 0.02562 * 10 9 7 27 27 H 1.07998 * 120.37665 * 359.97438 * 13 12 11 28 28 H 1.08000 * 119.13258 * 179.97438 * 14 13 12 29 29 H 1.08002 * 125.06483 * 179.97438 * 19 17 16 30 30 H 1.08001 * 126.56392 * 179.73599 * 20 19 17 31 31 H 1.07993 * 120.29461 * 180.24918 * 22 11 10 32 32 H 1.07997 * 119.42195 * 180.02562 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3834 2.1074 -1.3948 5 1 1.4952 2.6200 0.8027 6 1 3.5875 1.4123 0.5921 7 6 2.0076 -1.2127 -0.0005 8 1 3.0828 -1.2154 0.1020 9 6 1.3070 -2.4338 -0.1352 10 6 2.0206 -3.6371 -0.2628 11 6 1.3100 -4.8284 -0.4005 12 6 2.0175 -6.1225 -0.5448 13 6 3.0356 -6.2863 -1.4841 14 6 3.6701 -7.5114 -1.5865 15 7 3.3390 -8.5290 -0.8194 16 6 2.3803 -8.4384 0.0925 17 7 1.8563 -9.3307 0.9975 18 1 2.1471 -10.2499 1.1048 19 6 0.8637 -8.7315 1.7245 20 6 0.7117 -7.4571 1.3266 21 6 1.6845 -7.2265 0.2610 22 6 -0.0902 -4.7723 -0.3935 23 6 -0.7212 -3.5470 -0.2571 24 7 -0.0295 -2.4356 -0.1346 25 1 -0.4851 0.8399 -0.0004 26 1 3.1006 -3.6386 -0.2587 27 1 3.3246 -5.4664 -2.1248 28 1 4.4578 -7.6363 -2.3147 29 1 0.2881 -9.2114 2.5022 30 1 0.0027 -6.7416 1.7162 31 1 -0.6721 -5.6765 -0.4939 32 1 -1.8003 -3.5037 -0.2512 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240414450.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:57 Heat of formation + Delta-G solvation = 84.144433 kcal Electronic energy + Delta-G solvation = -18379.763127 eV Core-core repulsion = 15497.788279 eV Total energy + Delta-G solvation = -2881.974848 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.41425 -40.05799 -38.64764 -35.75670 -34.67554 -32.02244 -31.62647 -30.85102 -29.79156 -27.61601 -25.23994 -23.79334 -22.91819 -22.75413 -21.43401 -19.70934 -18.56040 -17.51788 -17.26034 -16.75738 -16.19953 -16.12906 -15.88214 -15.55410 -15.46087 -14.38217 -14.20399 -14.06372 -13.93513 -13.59239 -13.22904 -13.05138 -12.85116 -12.83615 -12.66391 -12.22086 -11.81616 -11.37575 -11.13920 -10.45508 -9.99643 -9.60036 -9.52433 -9.40628 -8.84494 -8.30767 -6.52529 -0.16404 0.38873 0.88576 1.13832 1.41722 1.53832 1.56224 1.81011 1.90268 2.23775 2.81519 2.94690 3.53046 3.80264 3.87695 3.91122 4.05616 4.20675 4.26498 4.52529 4.65511 4.70931 4.81689 4.85150 4.90832 4.96876 5.19979 5.37293 5.41635 5.48343 5.58177 5.63460 5.86427 6.00284 6.10289 6.26952 6.47385 6.71451 6.94009 7.06585 8.16771 8.45141 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.031930 B = 0.004763 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.719203 B = 5876.964262 C = 6376.000474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.026 3.974 3 Si 0.987 3.013 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.255 1.255 7 C -0.469 4.469 8 H 0.088 0.912 9 C 0.226 3.774 10 C -0.265 4.265 11 C 0.004 3.996 12 C 0.035 3.965 13 C -0.201 4.201 14 C 0.138 3.862 15 N -0.516 5.516 16 C 0.263 3.737 17 N -0.571 5.571 18 H 0.434 0.566 19 C 0.088 3.912 20 C -0.224 4.224 21 C -0.163 4.163 22 C -0.283 4.283 23 C 0.108 3.892 24 N -0.517 5.517 25 H 0.280 0.720 26 H 0.105 0.895 27 H 0.141 0.859 28 H 0.197 0.803 29 H 0.229 0.771 30 H 0.143 0.857 31 H 0.117 0.883 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.792 -13.385 1.434 13.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.179 1.179 7 C -0.500 4.500 8 H 0.106 0.894 9 C 0.101 3.899 10 C -0.288 4.288 11 C -0.002 4.002 12 C 0.026 3.974 13 C -0.222 4.222 14 C -0.026 4.026 15 N -0.230 5.230 16 C 0.029 3.971 17 N -0.180 5.180 18 H 0.274 0.726 19 C -0.038 4.038 20 C -0.249 4.249 21 C -0.170 4.170 22 C -0.306 4.306 23 C -0.056 4.056 24 N -0.231 5.231 25 H 0.090 0.910 26 H 0.124 0.876 27 H 0.159 0.841 28 H 0.214 0.786 29 H 0.245 0.755 30 H 0.161 0.839 31 H 0.135 0.865 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.608 -13.412 1.535 13.749 hybrid contribution 0.232 0.532 -0.071 0.584 sum 2.840 -12.880 1.465 13.271 Atomic orbital electron populations 1.70220 1.08906 1.29196 1.29492 1.26981 0.95706 1.04499 0.92413 0.85127 0.79095 0.75742 0.79317 1.18795 1.19141 1.17871 1.19974 0.95148 0.90549 1.44364 0.89396 1.18951 0.88792 0.92869 0.89314 1.21903 0.98814 0.92747 1.15366 1.18752 0.93480 0.91031 0.96979 1.18893 0.93687 0.91281 0.93523 1.22181 0.98346 1.00445 1.01253 1.22815 0.97796 0.86372 0.95609 1.66481 1.15699 1.34004 1.06863 1.18596 0.95096 0.89125 0.94242 1.41550 1.32234 1.13485 1.30689 0.72553 1.22547 0.91346 0.92563 0.97329 1.21841 1.03814 0.98090 1.01178 1.20127 1.01756 0.93844 1.01285 1.21513 0.93307 0.98370 1.17443 1.22894 0.99906 0.88743 0.94059 1.68664 1.07897 1.28198 1.18301 0.90962 0.87640 0.84076 0.78595 0.75474 0.83895 0.86498 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.22 11.49 21.84 0.25 -40.97 16 2 C 0.03 1.32 5.49 85.29 0.47 1.79 16 3 Si 0.99 38.35 29.56 68.60 2.03 40.38 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 7 C -0.47 -25.87 9.13 23.49 0.21 -25.66 16 8 H 0.09 4.55 7.85 -2.91 -0.02 4.52 16 9 C 0.23 12.77 6.55 40.20 0.26 13.03 16 10 C -0.27 -13.48 9.41 23.10 0.22 -13.26 16 11 C 0.00 0.18 5.50 -19.89 -0.11 0.08 16 12 C 0.03 1.37 5.55 -19.74 -0.11 1.26 16 13 C -0.20 -6.80 9.68 22.60 0.22 -6.58 16 14 C 0.14 3.96 11.13 84.74 0.94 4.90 16 15 N -0.52 -15.96 10.37 -192.95 -2.00 -17.96 16 16 C 0.26 8.19 8.43 133.91 1.13 9.32 16 17 N -0.57 -12.41 6.05 -192.30 -1.16 -13.58 16 18 H 0.43 6.24 8.96 -92.71 -0.83 5.41 16 19 C 0.09 1.76 11.82 83.03 0.98 2.74 16 20 C -0.22 -6.69 10.59 23.43 0.25 -6.44 16 21 C -0.16 -5.82 6.08 -20.02 -0.12 -5.94 16 22 C -0.28 -12.80 9.28 22.79 0.21 -12.58 16 23 C 0.11 5.29 11.17 84.81 0.95 6.24 16 24 N -0.52 -29.35 7.87 -189.37 -1.49 -30.84 16 25 H 0.28 13.71 8.29 -92.71 -0.77 12.94 16 26 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 27 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 28 H 0.20 3.86 8.06 -2.91 -0.02 3.84 16 29 H 0.23 2.00 8.06 -2.91 -0.02 1.97 16 30 H 0.14 4.40 8.00 -2.91 -0.02 4.38 16 31 H 0.12 4.71 8.05 -2.91 -0.02 4.69 16 32 H 0.14 6.06 8.06 -2.91 -0.02 6.04 16 Total: -1.00 -71.35 287.93 3.46 -67.90 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.33 Total: 26.17 kcal Atomic # 6 Polarization: -36.61 SS G_CDS: 5.50 Total: -31.11 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -4.40 Total: -103.34 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -71.35 3.46 -67.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240414450.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.040 kcal (2) G-P(sol) polarization free energy of solvation -71.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds