Wall clock time and date at job start Mon Mar 30 2020 00:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39568 * 120.45456 * 216.00529 * 3 2 1 5 5 C 1.37729 * 120.18393 * 180.02562 * 4 3 2 6 6 C 1.39805 * 121.17574 * 359.97438 * 5 4 3 7 7 C 1.48347 * 119.54027 * 179.97438 * 6 5 4 8 8 C 1.39987 * 120.87105 * 179.97438 * 7 6 5 9 9 C 1.37809 * 119.18873 * 180.27210 * 8 7 6 10 10 N 1.32013 * 120.98080 * 359.46474 * 9 8 7 11 11 C 1.32429 * 121.90805 * 0.57457 * 10 9 8 12 12 N 1.39035 * 119.64237 * 179.71111 * 11 10 9 13 13 C 1.38935 * 120.70374 * 359.68726 * 11 10 9 14 14 C 1.38579 * 120.92477 * 0.25540 * 6 5 4 15 15 C 1.40636 * 119.73449 * 359.51482 * 14 6 5 16 16 C 1.40836 * 120.55584 * 180.21392 * 15 14 6 17 17 H 1.07992 * 119.99857 * 204.65482 * 16 15 14 18 18 C 1.40242 * 119.99956 * 24.64159 * 16 15 14 19 19 N 1.30658 * 120.00032 * 17.30432 * 18 16 15 20 20 Si 1.86798 * 120.00309 * 197.29636 * 18 16 15 21 21 H 1.48501 * 109.46935 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47329 * 120.00246 * 20 18 16 23 23 H 1.48494 * 109.47471 * 240.00747 * 20 18 16 24 24 H 1.07999 * 119.90314 * 0.02562 * 4 3 2 25 25 H 1.08006 * 119.41349 * 179.97438 * 5 4 3 26 26 H 1.08003 * 120.40081 * 0.02562 * 8 7 6 27 27 H 1.08001 * 119.50759 * 179.74673 * 9 8 7 28 28 H 0.97003 * 119.99796 * 179.97438 * 12 11 10 29 29 H 0.97000 * 120.00845 * 359.97438 * 12 11 10 30 30 H 1.08007 * 120.52503 * 180.02562 * 13 11 10 31 31 H 1.08006 * 120.13365 * 179.72333 * 14 6 5 32 32 H 0.96997 * 120.00279 * 184.51098 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2749 0.9742 0.7073 5 6 4.6522 0.9699 0.7030 6 6 5.3707 -0.0002 -0.0022 7 6 6.8537 0.0298 0.0177 8 6 7.6009 -0.9281 -0.6780 9 6 8.9770 -0.8709 -0.6312 10 7 9.5950 0.0768 0.0490 11 6 8.9293 1.0028 0.7221 12 7 9.6283 1.9758 1.4276 13 6 7.5400 1.0126 0.7304 14 6 4.7169 -0.9859 -0.7242 15 6 3.3111 -1.0208 -0.7424 16 6 2.6290 -2.0176 -1.4667 17 1 1.6222 -1.8390 -1.8142 18 6 3.2573 -3.2419 -1.7370 19 7 4.3121 -3.5997 -1.0540 20 14 2.5861 -4.3613 -3.0733 21 1 1.3938 -3.7306 -3.6946 22 1 3.6283 -4.5758 -4.1091 23 1 2.2027 -5.6670 -2.4791 24 1 2.7404 1.7331 1.2594 25 1 5.1867 1.7295 1.2543 26 1 7.1048 -1.7047 -1.2412 27 1 9.5585 -1.6097 -1.1627 28 1 9.1459 2.6568 1.9221 29 1 10.5983 1.9738 1.4254 30 1 7.0000 1.7695 1.2800 31 1 5.2848 -1.7264 -1.2680 32 1 4.7854 -4.4145 -1.2839 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241163503.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:09:42 Heat of formation + Delta-G solvation = 73.251047 kcal Electronic energy + Delta-G solvation = -18199.403010 eV Core-core repulsion = 15316.955789 eV Total energy + Delta-G solvation = -2882.447221 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.80217 -37.76168 -35.31201 -34.51573 -34.17089 -32.50550 -30.13828 -29.07785 -28.75156 -25.88807 -23.72218 -22.94689 -20.94496 -20.73370 -17.95034 -17.41013 -17.02768 -16.45313 -15.56396 -15.40047 -14.67312 -14.17265 -13.88772 -13.75170 -13.46524 -13.16716 -12.85965 -12.73514 -12.03607 -11.90911 -11.73322 -11.52762 -11.39853 -11.17781 -11.14567 -10.68023 -10.45261 -10.15454 -9.76816 -9.65421 -9.29448 -9.11317 -7.85321 -7.59831 -7.42269 -7.16075 -4.78226 1.26077 1.77140 2.46398 2.59776 2.90365 2.96332 3.02682 3.66578 3.73875 3.87281 4.01138 4.40031 4.50940 4.97206 5.21353 5.34657 5.40764 5.55176 5.69537 5.79413 5.97485 6.04603 6.32053 6.37324 6.59052 6.67263 6.80532 6.91876 6.99248 7.16221 7.38667 7.49554 7.59246 7.65617 7.69450 7.80583 8.12552 8.35444 8.45474 8.55304 8.77650 9.68951 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.018161 B = 0.006206 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.418061 B = 4510.793662 C = 5973.479755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.299 3.701 3 C -0.183 4.183 4 C -0.030 4.030 5 C -0.230 4.230 6 C -0.031 4.031 7 C 0.063 3.937 8 C -0.219 4.219 9 C 0.138 3.862 10 N -0.560 5.560 11 C 0.394 3.606 12 N -0.860 5.860 13 C -0.236 4.236 14 C -0.129 4.129 15 C 0.146 3.854 16 C -0.426 4.426 17 H 0.087 0.913 18 C 0.076 3.924 19 N -0.763 5.763 20 Si 0.913 3.087 21 H -0.256 1.256 22 H -0.265 1.265 23 H -0.269 1.269 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.138 0.862 27 H 0.150 0.850 28 H 0.404 0.596 29 H 0.398 0.602 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.925 3.561 0.703 10.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.010 4.010 3 C -0.189 4.189 4 C -0.051 4.051 5 C -0.250 4.250 6 C -0.032 4.032 7 C 0.055 3.945 8 C -0.241 4.241 9 C -0.017 4.017 10 N -0.279 5.279 11 C 0.158 3.842 12 N -0.405 5.405 13 C -0.261 4.261 14 C -0.148 4.148 15 C 0.140 3.860 16 C -0.453 4.453 17 H 0.105 0.895 18 C -0.147 4.147 19 N -0.385 5.385 20 Si 0.736 3.264 21 H -0.179 1.179 22 H -0.190 1.190 23 H -0.194 1.194 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.156 0.844 27 H 0.167 0.833 28 H 0.233 0.767 29 H 0.227 0.773 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.176 3.313 0.767 9.786 hybrid contribution -0.463 -0.334 -0.271 0.632 sum 8.713 2.979 0.496 9.222 Atomic orbital electron populations 1.81022 1.12741 1.11915 1.13085 1.25785 0.92723 0.91159 0.91358 1.16984 0.83280 1.06349 1.12298 1.20377 0.93550 0.95458 0.95677 1.20129 0.93011 1.02615 1.09259 1.18443 0.89277 0.96484 0.98984 1.19204 0.93473 0.91207 0.90587 1.22072 0.94655 1.02305 1.05099 1.22181 0.91968 0.93819 0.93753 1.67022 1.40987 1.06062 1.13874 1.18200 0.88211 0.88174 0.89582 1.42102 1.09218 1.32094 1.57068 1.21396 0.92434 1.04005 1.08272 1.21490 0.93771 0.98127 1.01425 1.18369 0.91176 0.89221 0.87219 1.19830 1.01618 0.96783 1.27066 0.89479 1.26098 0.94405 0.98458 0.95720 1.69711 1.15092 1.22302 1.31385 0.86133 0.80554 0.79411 0.80282 1.17903 1.18972 1.19396 0.88094 0.88125 0.84439 0.83256 0.76658 0.77328 0.85210 0.84805 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.14 18.54 41.84 0.78 -11.37 16 2 C 0.30 6.94 14.28 -22.47 -0.32 6.62 16 3 C -0.18 -4.12 5.94 -104.14 -0.62 -4.74 16 4 C -0.03 -0.59 9.74 -39.27 -0.38 -0.98 16 5 C -0.23 -4.41 9.39 -39.18 -0.37 -4.78 16 6 C -0.03 -0.62 5.86 -105.02 -0.62 -1.24 16 7 C 0.06 1.15 5.91 -104.63 -0.62 0.53 16 8 C -0.22 -3.73 9.48 -39.08 -0.37 -4.10 16 9 C 0.14 2.13 11.16 -17.63 -0.20 1.93 16 10 N -0.56 -8.98 10.38 -12.52 -0.13 -9.11 16 11 C 0.39 5.94 7.74 -155.04 -1.20 4.74 16 12 N -0.86 -9.32 9.07 31.10 0.28 -9.04 16 13 C -0.24 -3.79 9.31 -38.87 -0.36 -4.15 16 14 C -0.13 -2.85 8.08 -38.55 -0.31 -3.16 16 15 C 0.15 3.43 5.73 -104.67 -0.60 2.83 16 16 C -0.43 -10.15 8.58 -37.85 -0.32 -10.47 16 17 H 0.09 2.12 7.37 -52.49 -0.39 1.73 16 18 C 0.08 1.67 5.16 -17.30 -0.09 1.58 16 19 N -0.76 -16.80 10.95 55.56 0.61 -16.19 16 20 Si 0.91 16.75 29.60 -169.99 -5.03 11.72 16 21 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 22 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 23 H -0.27 -4.92 7.11 56.52 0.40 -4.51 16 24 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 25 H 0.10 1.66 6.18 -52.48 -0.32 1.34 16 26 H 0.14 2.34 6.28 -52.48 -0.33 2.01 16 27 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 28 H 0.40 3.36 8.82 -40.82 -0.36 3.00 16 29 H 0.40 3.76 8.95 -40.82 -0.37 3.39 16 30 H 0.13 1.85 6.26 -52.48 -0.33 1.52 16 31 H 0.13 2.94 4.33 -52.48 -0.23 2.72 16 32 H 0.29 5.72 8.30 -40.82 -0.34 5.38 16 LS Contribution 288.82 15.07 4.35 4.35 Total: -1.00 -26.58 288.82 -7.82 -34.40 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -2.30 Total: 10.62 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -6.38 Total: -15.38 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 1.54 Total: -45.71 kcal Atomic # 14 Polarization: 16.75 SS G_CDS: -5.03 Total: 11.72 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.58 -7.82 -34.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241163503.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.652 kcal (2) G-P(sol) polarization free energy of solvation -26.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds