Wall clock time and date at job start Mon Mar 30 2020 00:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39568 * 120.45456 * 216.00529 * 3 2 1 5 5 C 1.37729 * 120.18393 * 180.02562 * 4 3 2 6 6 C 1.39805 * 121.17574 * 359.97438 * 5 4 3 7 7 C 1.48347 * 119.54027 * 179.97438 * 6 5 4 8 8 C 1.39987 * 120.87105 * 179.97438 * 7 6 5 9 9 C 1.37809 * 119.18873 * 180.27210 * 8 7 6 10 10 N 1.32013 * 120.98080 * 359.46474 * 9 8 7 11 11 C 1.32429 * 121.90805 * 0.57457 * 10 9 8 12 12 N 1.39035 * 119.64237 * 179.71111 * 11 10 9 13 13 C 1.38935 * 120.70374 * 359.68726 * 11 10 9 14 14 C 1.38579 * 120.92477 * 0.25540 * 6 5 4 15 15 C 1.40636 * 119.73449 * 359.51482 * 14 6 5 16 16 C 1.40836 * 120.55584 * 180.21392 * 15 14 6 17 17 H 1.07992 * 119.99857 * 204.65482 * 16 15 14 18 18 C 1.40242 * 119.99956 * 24.64159 * 16 15 14 19 19 N 1.30658 * 120.00032 * 17.30432 * 18 16 15 20 20 Si 1.86798 * 120.00309 * 197.29636 * 18 16 15 21 21 H 1.48501 * 109.46935 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47329 * 120.00246 * 20 18 16 23 23 H 1.48494 * 109.47471 * 240.00747 * 20 18 16 24 24 H 1.07999 * 119.90314 * 0.02562 * 4 3 2 25 25 H 1.08006 * 119.41349 * 179.97438 * 5 4 3 26 26 H 1.08003 * 120.40081 * 0.02562 * 8 7 6 27 27 H 1.08001 * 119.50759 * 179.74673 * 9 8 7 28 28 H 0.97003 * 119.99796 * 179.97438 * 12 11 10 29 29 H 0.97000 * 120.00845 * 359.97438 * 12 11 10 30 30 H 1.08007 * 120.52503 * 180.02562 * 13 11 10 31 31 H 1.08006 * 120.13365 * 179.72333 * 14 6 5 32 32 H 0.96997 * 120.00279 * 184.51098 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2749 0.9742 0.7073 5 6 4.6522 0.9699 0.7030 6 6 5.3707 -0.0002 -0.0022 7 6 6.8537 0.0298 0.0177 8 6 7.6009 -0.9281 -0.6780 9 6 8.9770 -0.8709 -0.6312 10 7 9.5950 0.0768 0.0490 11 6 8.9293 1.0028 0.7221 12 7 9.6283 1.9758 1.4276 13 6 7.5400 1.0126 0.7304 14 6 4.7169 -0.9859 -0.7242 15 6 3.3111 -1.0208 -0.7424 16 6 2.6290 -2.0176 -1.4667 17 1 1.6222 -1.8390 -1.8142 18 6 3.2573 -3.2419 -1.7370 19 7 4.3121 -3.5997 -1.0540 20 14 2.5861 -4.3613 -3.0733 21 1 1.3938 -3.7306 -3.6946 22 1 3.6283 -4.5758 -4.1091 23 1 2.2027 -5.6670 -2.4791 24 1 2.7404 1.7331 1.2594 25 1 5.1867 1.7295 1.2543 26 1 7.1048 -1.7047 -1.2412 27 1 9.5585 -1.6097 -1.1627 28 1 9.1459 2.6568 1.9221 29 1 10.5983 1.9738 1.4254 30 1 7.0000 1.7695 1.2800 31 1 5.2848 -1.7264 -1.2680 32 1 4.7854 -4.4145 -1.2839 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241163503.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:09:41 Heat of formation + Delta-G solvation = 59.354433 kcal Electronic energy + Delta-G solvation = -18200.005612 eV Core-core repulsion = 15316.955789 eV Total energy + Delta-G solvation = -2883.049824 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.05553 -39.34964 -37.07480 -35.99918 -35.45302 -33.92459 -31.76172 -30.53727 -29.99506 -27.54854 -25.17426 -24.26598 -22.51968 -22.13041 -19.58447 -18.96553 -18.18908 -17.77623 -16.96388 -16.79985 -15.95513 -15.66495 -15.13130 -15.10044 -14.81015 -14.77712 -14.53271 -14.36866 -13.63496 -13.49434 -13.42423 -13.08615 -12.96931 -12.73773 -12.63777 -12.15314 -11.78781 -11.62618 -11.36305 -11.20422 -10.74274 -10.34961 -9.51683 -9.04356 -8.78631 -8.66085 -6.52763 -0.21482 0.54735 0.94618 1.02213 1.38363 1.50391 1.53338 2.03863 2.15108 2.39924 2.66707 2.74946 3.16748 3.59209 3.70505 3.78223 3.95828 4.32725 4.37635 4.45094 4.64643 4.66938 4.94513 5.01868 5.04682 5.12255 5.21871 5.44352 5.55435 5.75426 5.82804 5.93215 6.09520 6.16106 6.42934 6.51553 6.65063 6.69806 6.76572 6.96787 7.46406 8.08805 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.018161 B = 0.006206 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.418061 B = 4510.793662 C = 5973.479755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C 0.305 3.695 3 C -0.207 4.207 4 C -0.027 4.027 5 C -0.223 4.223 6 C -0.026 4.026 7 C 0.038 3.962 8 C -0.234 4.234 9 C 0.143 3.857 10 N -0.570 5.570 11 C 0.392 3.608 12 N -0.841 5.841 13 C -0.236 4.236 14 C -0.152 4.152 15 C 0.126 3.874 16 C -0.462 4.462 17 H 0.068 0.932 18 C 0.048 3.952 19 N -0.783 5.783 20 Si 0.974 3.026 21 H -0.269 1.269 22 H -0.249 1.249 23 H -0.264 1.264 24 H 0.129 0.871 25 H 0.135 0.865 26 H 0.129 0.871 27 H 0.179 0.821 28 H 0.418 0.582 29 H 0.408 0.592 30 H 0.149 0.851 31 H 0.128 0.872 32 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.011 4.441 1.316 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.211 5.211 2 C -0.004 4.004 3 C -0.214 4.214 4 C -0.048 4.048 5 C -0.242 4.242 6 C -0.028 4.028 7 C 0.030 3.970 8 C -0.256 4.256 9 C -0.012 4.012 10 N -0.290 5.290 11 C 0.155 3.845 12 N -0.386 5.386 13 C -0.260 4.260 14 C -0.171 4.171 15 C 0.120 3.880 16 C -0.490 4.490 17 H 0.087 0.913 18 C -0.173 4.173 19 N -0.405 5.405 20 Si 0.795 3.205 21 H -0.193 1.193 22 H -0.172 1.172 23 H -0.189 1.189 24 H 0.147 0.853 25 H 0.153 0.847 26 H 0.146 0.854 27 H 0.195 0.805 28 H 0.250 0.750 29 H 0.238 0.762 30 H 0.167 0.833 31 H 0.146 0.854 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.289 4.234 1.414 12.140 hybrid contribution -0.927 -0.483 -0.357 1.104 sum 10.362 3.751 1.057 11.071 Atomic orbital electron populations 1.80996 1.13222 1.12767 1.14067 1.26008 0.92953 0.90592 0.90799 1.17248 0.82994 1.07494 1.13623 1.20701 0.94059 0.95138 0.94878 1.20539 0.92856 1.02578 1.08253 1.18751 0.90850 0.95588 0.97561 1.19225 0.92407 0.92903 0.92476 1.22091 0.95515 1.02362 1.05682 1.22582 0.91481 0.94011 0.93160 1.67147 1.41128 1.06458 1.14241 1.18430 0.88283 0.88491 0.89326 1.42075 1.09820 1.31043 1.55694 1.21542 0.92999 1.03688 1.07810 1.21456 0.93222 0.99389 1.03030 1.18657 0.92124 0.89625 0.87555 1.19881 1.01388 0.98393 1.29298 0.91337 1.26692 0.94584 0.98898 0.97170 1.69703 1.15671 1.23112 1.32058 0.85249 0.79720 0.77480 0.78080 1.19260 1.17239 1.18870 0.85295 0.84701 0.85353 0.80453 0.74971 0.76180 0.83300 0.85405 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.84 18.54 19.00 0.35 -25.49 16 2 C 0.30 14.45 14.28 88.33 1.26 15.72 16 3 C -0.21 -9.47 5.94 -19.55 -0.12 -9.59 16 4 C -0.03 -1.05 9.74 22.47 0.22 -0.83 16 5 C -0.22 -8.09 9.39 22.53 0.21 -7.88 16 6 C -0.03 -1.05 5.86 -20.13 -0.12 -1.17 16 7 C 0.04 1.32 5.91 -19.87 -0.12 1.20 16 8 C -0.23 -7.81 9.48 22.59 0.21 -7.59 16 9 C 0.14 4.13 11.16 84.56 0.94 5.08 16 10 N -0.57 -16.75 10.38 -193.51 -2.01 -18.76 16 11 C 0.39 10.61 7.74 133.00 1.03 11.64 16 12 N -0.84 -15.09 9.07 -55.52 -0.50 -15.59 16 13 C -0.24 -6.89 9.31 22.73 0.21 -6.68 16 14 C -0.15 -6.86 8.08 22.94 0.19 -6.67 16 15 C 0.13 6.13 5.73 -19.90 -0.11 6.01 16 16 C -0.46 -23.03 8.58 23.39 0.20 -22.83 16 17 H 0.07 3.54 7.37 -2.91 -0.02 3.52 16 18 C 0.05 2.14 5.16 85.35 0.44 2.58 16 19 N -0.78 -35.19 10.95 21.88 0.24 -34.95 16 20 Si 0.97 34.90 29.60 68.60 2.03 36.93 16 21 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.25 -8.18 7.11 99.48 0.71 -7.47 16 23 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 24 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 25 H 0.14 3.92 6.18 -2.91 -0.02 3.90 16 26 H 0.13 4.45 6.28 -2.91 -0.02 4.43 16 27 H 0.18 3.94 8.06 -2.91 -0.02 3.91 16 28 H 0.42 5.24 8.82 -92.71 -0.82 4.42 16 29 H 0.41 6.18 8.95 -92.71 -0.83 5.35 16 30 H 0.15 3.64 6.26 -2.91 -0.02 3.62 16 31 H 0.13 5.84 4.33 -2.91 -0.01 5.83 16 32 H 0.30 11.95 8.30 -92.71 -0.77 11.18 16 Total: -1.00 -57.97 288.82 4.13 -53.84 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -0.43 Total: 25.03 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 4.45 Total: -21.02 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -1.92 Total: -94.78 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.93 kcal Total: -57.97 4.13 -53.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241163503.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.193 kcal (2) G-P(sol) polarization free energy of solvation -57.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds