Wall clock time and date at job start Mon Mar 30 2020 00:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47197 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.43202 * 179.97438 * 186.31455 * 3 2 1 5 5 C 1.39619 * 120.49775 * 260.17316 * 4 3 2 6 6 N 1.31723 * 120.84320 * 179.97438 * 5 4 3 7 7 C 1.31773 * 122.01859 * 359.97438 * 6 5 4 8 8 C 1.39444 * 120.89961 * 359.97438 * 7 6 5 9 9 C 1.48313 * 120.47149 * 180.02562 * 8 7 6 10 10 C 1.40035 * 119.98237 * 179.97438 * 9 8 7 11 11 N 1.32171 * 120.29441 * 180.02562 * 10 9 8 12 12 C 1.31889 * 120.28458 * 359.97438 * 11 10 9 13 13 C 1.40822 * 119.96348 * 0.02562 * 12 11 10 14 14 C 1.41327 * 120.14606 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99843 * 9.05413 * 14 13 12 16 16 C 1.40046 * 119.99888 * 189.05371 * 14 13 12 17 17 N 1.30732 * 119.99782 * 191.67468 * 16 14 13 18 18 Si 1.86796 * 120.00279 * 11.67256 * 16 14 13 19 19 H 1.48500 * 109.47086 * 270.00369 * 18 16 14 20 20 H 1.48502 * 109.47034 * 29.99965 * 18 16 14 21 21 H 1.48504 * 109.47423 * 150.00145 * 18 16 14 22 22 N 1.32513 * 119.98653 * 0.23570 * 9 8 7 23 23 C 1.39590 * 119.05305 * 0.29360 * 8 7 6 24 24 H 1.09006 * 109.46991 * 93.51568 * 1 2 3 25 25 H 1.09008 * 109.46913 * 213.50863 * 1 2 3 26 26 H 1.08993 * 109.47410 * 333.50928 * 1 2 3 27 27 H 1.08004 * 119.57913 * 359.95783 * 5 4 3 28 28 H 1.07992 * 119.55056 * 180.02562 * 7 6 5 29 29 H 1.08002 * 119.84855 * 0.02562 * 10 9 8 30 30 H 1.08001 * 120.01602 * 180.02562 * 12 11 10 31 31 H 0.96996 * 120.00356 * 354.90838 * 17 16 14 32 32 H 1.07998 * 120.90854 * 179.70593 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0018 0.0001 5 6 4.7863 0.2078 1.1855 6 7 6.1035 0.2098 1.1935 7 6 6.8091 0.0194 0.0970 8 6 6.1820 -0.1948 -1.1300 9 6 6.9855 -0.4085 -2.3581 10 6 6.3451 -0.6233 -3.5848 11 7 7.0551 -0.8150 -4.6830 12 6 8.3730 -0.8051 -4.6332 13 6 9.0289 -0.5902 -3.4057 14 6 10.4409 -0.5795 -3.3477 15 1 11.0189 -0.5893 -4.2601 16 6 11.0906 -0.5561 -2.1073 17 7 12.3745 -0.3171 -2.0464 18 14 10.1229 -0.8664 -0.5400 19 1 9.6059 0.4226 -0.0141 20 1 8.9845 -1.7739 -0.8326 21 1 11.0090 -1.4945 0.4728 22 7 8.3091 -0.4014 -2.2932 23 6 4.7873 -0.1995 -1.1867 24 1 -0.3633 -0.0630 -1.0258 25 1 -0.3633 -0.8569 0.5674 26 1 -0.3634 0.9197 0.4584 27 1 4.2474 0.3677 2.1077 28 1 7.8877 0.0287 0.1494 29 1 5.2663 -0.6323 -3.6336 30 1 8.9489 -0.9618 -5.5333 31 1 12.8908 -0.2292 -2.8628 32 1 4.2707 -0.3578 -2.1218 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242939553.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:25 Heat of formation + Delta-G solvation = 104.784833 kcal Electronic energy + Delta-G solvation = -18116.648635 eV Core-core repulsion = 15235.568822 eV Total energy + Delta-G solvation = -2881.079814 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.26639 -39.15099 -34.81954 -34.42068 -33.54615 -32.51804 -31.74385 -29.56480 -28.03161 -26.16383 -24.41099 -23.72053 -22.29026 -21.09895 -18.68412 -17.90203 -17.04167 -16.61997 -15.67354 -15.46373 -15.13426 -14.43390 -14.27482 -13.90564 -13.82035 -13.59333 -13.29123 -13.10585 -12.97580 -12.83617 -12.03415 -11.47890 -11.18392 -11.11893 -11.10909 -10.40162 -10.33869 -10.02718 -9.73642 -9.41623 -9.32456 -9.04191 -8.69069 -7.95681 -7.86892 -7.38733 -5.07478 0.71182 1.06025 2.26987 2.48816 2.49345 2.98487 3.31215 3.43266 3.72442 3.94239 4.03887 4.09997 4.43433 4.54169 4.79489 4.88871 5.09029 5.21842 5.27618 5.29013 5.30480 5.46063 5.54463 5.63002 5.75610 5.91413 6.00816 6.19665 6.32833 6.51775 6.67418 6.76560 7.11544 7.17059 7.42378 7.72483 7.87663 8.06196 8.25818 8.66762 9.14116 9.70941 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.026187 B = 0.005513 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.972324 B = 5078.108452 C = 6092.731922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.165 4.165 3 C -0.136 4.136 4 C -0.043 4.043 5 C 0.119 3.881 6 N -0.482 5.482 7 C 0.124 3.876 8 C -0.071 4.071 9 C 0.163 3.837 10 C -0.101 4.101 11 N -0.419 5.419 12 C -0.036 4.036 13 C 0.201 3.799 14 C -0.450 4.450 15 H 0.092 0.908 16 C 0.044 3.956 17 N -0.785 5.785 18 Si 1.129 2.871 19 H -0.276 1.276 20 H -0.269 1.269 21 H -0.317 1.317 22 N -0.532 5.532 23 C -0.038 4.038 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.158 0.842 28 H 0.172 0.828 29 H 0.136 0.864 30 H 0.142 0.858 31 H 0.289 0.711 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.026 0.327 4.463 15.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.165 4.165 3 C -0.137 4.137 4 C -0.046 4.046 5 C -0.039 4.039 6 N -0.189 5.189 7 C -0.032 4.032 8 C -0.075 4.075 9 C 0.019 3.981 10 C -0.258 4.258 11 N -0.130 5.130 12 C -0.208 4.208 13 C 0.077 3.923 14 C -0.482 4.482 15 H 0.110 0.890 16 C -0.180 4.180 17 N -0.405 5.405 18 Si 0.962 3.038 19 H -0.204 1.204 20 H -0.196 1.196 21 H -0.249 1.249 22 N -0.254 5.254 23 C -0.064 4.064 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.175 0.825 28 H 0.189 0.811 29 H 0.153 0.847 30 H 0.160 0.840 31 H 0.101 0.899 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.323 0.448 6.774 15.851 hybrid contribution -0.359 0.014 -2.769 2.792 sum -14.682 0.462 4.005 15.226 Atomic orbital electron populations 1.18891 0.84124 1.03158 1.03309 1.22275 0.93663 1.00624 0.99981 1.18863 0.90672 1.01893 1.02272 1.16717 0.87366 1.05499 0.94969 1.22966 0.89909 0.94399 0.96633 1.67760 1.07395 1.13172 1.30569 1.23706 1.01779 0.91086 0.86653 1.19578 0.92573 1.01124 0.94204 1.19986 0.90780 0.95570 0.91746 1.22416 0.99001 1.15639 0.88705 1.67719 1.07996 1.07270 1.30026 1.23220 0.90216 1.09085 0.98284 1.19331 0.94644 0.90253 0.88117 1.20807 0.89941 1.40819 0.96636 0.89040 1.27759 0.96017 0.88989 1.05200 1.70594 1.08111 1.27238 1.34600 0.82587 0.72213 0.78531 0.70447 1.20419 1.19603 1.24864 1.67656 1.04972 1.23049 1.29738 1.21732 0.92686 0.94179 0.97840 0.89904 0.89962 0.89967 0.82459 0.81138 0.84672 0.84041 0.89936 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.26 10.32 34.37 0.35 0.09 16 2 C -0.17 -1.89 14.13 -37.12 -0.52 -2.41 16 3 C -0.14 -1.85 13.27 -38.84 -0.52 -2.37 16 4 C -0.04 -0.65 5.73 -106.90 -0.61 -1.26 16 5 C 0.12 1.78 10.91 -17.08 -0.19 1.60 16 6 N -0.48 -8.56 10.33 -12.64 -0.13 -8.69 16 7 C 0.12 2.44 10.72 -17.13 -0.18 2.26 16 8 C -0.07 -1.38 5.89 -104.80 -0.62 -1.99 16 9 C 0.16 3.61 6.74 -82.75 -0.56 3.05 16 10 C -0.10 -2.15 10.63 -16.73 -0.18 -2.33 16 11 N -0.42 -9.56 10.47 -12.05 -0.13 -9.68 16 12 C -0.04 -0.84 10.98 -16.55 -0.18 -1.02 16 13 C 0.20 5.01 6.30 -84.84 -0.53 4.47 16 14 C -0.45 -11.36 9.56 -37.73 -0.36 -11.72 16 15 H 0.09 2.25 8.06 -52.48 -0.42 1.83 16 16 C 0.04 1.13 5.52 -17.34 -0.10 1.03 16 17 N -0.79 -20.00 13.65 55.55 0.76 -19.24 16 18 Si 1.13 26.25 23.61 -169.99 -4.01 22.24 16 19 H -0.28 -6.22 6.03 56.52 0.34 -5.87 16 20 H -0.27 -6.31 6.24 56.52 0.35 -5.95 16 21 H -0.32 -7.25 7.11 56.52 0.40 -6.85 16 22 N -0.53 -12.98 4.32 -7.50 -0.03 -13.01 16 23 C -0.04 -0.62 9.26 -38.53 -0.36 -0.97 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.16 1.84 8.06 -52.48 -0.42 1.42 16 28 H 0.17 3.60 3.25 -52.49 -0.17 3.43 16 29 H 0.14 2.43 6.25 -52.49 -0.33 2.10 16 30 H 0.14 2.97 8.06 -52.49 -0.42 2.54 16 31 H 0.29 6.96 8.73 -40.82 -0.36 6.61 16 32 H 0.14 2.05 6.30 -52.49 -0.33 1.72 16 LS Contribution 284.82 15.07 4.29 4.29 Total: -1.00 -28.22 284.82 -6.43 -34.65 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -2.63 Total: 1.03 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -4.55 Total: -11.57 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 0.47 Total: -50.63 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -4.01 Total: 22.24 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.22 -6.43 -34.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242939553.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.431 kcal (2) G-P(sol) polarization free energy of solvation -28.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds