Wall clock time and date at job start Mon Mar 30 2020 00:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47005 * 270.00317 * 3 2 1 5 5 H 1.48503 * 109.46642 * 30.00084 * 3 2 1 6 6 H 1.48494 * 109.47014 * 149.99942 * 3 2 1 7 7 C 1.39940 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99976 * 163.64679 * 7 2 1 9 9 C 1.41432 * 119.99970 * 343.64293 * 7 2 1 10 10 C 1.40815 * 120.60175 * 155.73951 * 9 7 2 11 11 N 1.31496 * 120.67561 * 179.97438 * 10 9 7 12 12 C 1.31936 * 122.12650 * 359.74169 * 11 10 9 13 13 C 1.39718 * 121.14149 * 0.54979 * 12 11 10 14 14 C 1.48310 * 120.41288 * 179.71631 * 13 12 11 15 15 C 1.39043 * 120.20775 * 129.74442 * 14 13 12 16 16 C 1.38489 * 120.31392 * 180.02562 * 15 14 13 17 17 C 1.37725 * 120.67438 * 359.95073 * 16 15 14 18 18 C 1.39805 * 120.01998 * 0.02562 * 17 16 15 19 19 N 1.35817 * 133.50552 * 180.27629 * 18 17 16 20 20 C 1.30111 * 109.59701 * 180.13217 * 19 18 17 21 21 N 1.36034 * 110.06519 * 359.60530 * 20 19 18 22 22 H 0.96999 * 126.34268 * 180.21636 * 21 20 19 23 23 C 1.37877 * 107.32448 * 0.24279 * 21 20 19 24 24 C 1.39216 * 119.17228 * 359.44748 * 13 12 11 25 25 H 0.96998 * 119.99721 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.66073 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.43305 * 180.26912 * 12 11 10 28 28 H 1.08000 * 119.83982 * 0.02562 * 15 14 13 29 29 H 1.08008 * 119.66530 * 179.97438 * 16 15 14 30 30 H 1.07997 * 119.99226 * 180.02562 * 17 16 15 31 31 H 1.08004 * 124.97164 * 179.86665 * 20 19 18 32 32 H 1.07998 * 120.96032 * 180.29517 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0552 -1.2307 -0.2639 9 6 1.3437 -2.4121 0.3439 10 6 1.8231 -3.6540 -0.1153 11 7 1.2070 -4.7708 0.2044 12 6 0.1282 -4.7843 0.9639 13 6 -0.4215 -3.5992 1.4594 14 6 -1.6383 -3.6327 2.3067 15 6 -1.6651 -2.9536 3.5197 16 6 -2.7999 -2.9839 4.3128 17 6 -3.9172 -3.6837 3.9143 18 6 -3.9136 -4.3736 2.6983 19 7 -4.8372 -5.1283 2.0488 20 6 -4.3374 -5.5606 0.9279 21 7 -3.0640 -5.1059 0.7786 22 1 -2.4746 -5.2831 0.0289 23 6 -2.7660 -4.3470 1.8905 24 6 0.1905 -2.3870 1.1526 25 1 -0.4849 0.8400 0.0004 26 1 2.7059 -3.6895 -0.7364 27 1 -0.3407 -5.7273 1.2031 28 1 -0.7967 -2.4000 3.8449 29 1 -2.8091 -2.4530 5.2534 30 1 -4.7964 -3.6995 4.5412 31 1 -4.8588 -6.1853 0.2177 32 1 -0.2071 -1.4541 1.5241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243932154.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:21 Heat of formation + Delta-G solvation = 86.192450 kcal Electronic energy + Delta-G solvation = -18673.908779 eV Core-core repulsion = 15792.022739 eV Total energy + Delta-G solvation = -2881.886040 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.76087 -38.51484 -36.76642 -34.24040 -33.24239 -31.20848 -30.42368 -29.02383 -28.11446 -25.74056 -23.28944 -22.21264 -21.91364 -21.32197 -20.05889 -17.94978 -17.12107 -16.53817 -15.81652 -15.35575 -15.23764 -14.92317 -14.45935 -13.87005 -13.83779 -13.35125 -12.90143 -12.44958 -11.88412 -11.73980 -11.59533 -11.50343 -11.36122 -11.29098 -11.09471 -10.69642 -10.41490 -10.17425 -9.68015 -9.50613 -8.53756 -8.29862 -8.06059 -7.90590 -7.28702 -6.98056 -4.63854 1.20565 1.86877 2.43881 2.74690 2.95378 2.98533 3.07274 3.17078 3.29219 3.75594 4.21985 4.45023 4.50324 4.97100 5.32285 5.40918 5.51457 5.61847 5.72224 5.83718 5.85212 6.06864 6.30750 6.45095 6.61067 6.67598 6.76042 6.82812 6.92618 7.01181 7.06942 7.20805 7.50310 7.62695 7.70789 7.77972 8.10006 8.26836 8.52998 8.55154 9.45729 9.92737 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.022451 B = 0.005955 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.871004 B = 4701.061421 C = 5310.586062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.447 4.447 8 H 0.085 0.915 9 C 0.063 3.937 10 C -0.019 4.019 11 N -0.466 5.466 12 C -0.036 4.036 13 C -0.094 4.094 14 C 0.002 3.998 15 C -0.102 4.102 16 C -0.122 4.122 17 C -0.084 4.084 18 C 0.042 3.958 19 N -0.504 5.504 20 C 0.251 3.749 21 N -0.593 5.593 22 H 0.426 0.574 23 C 0.062 3.938 24 C -0.113 4.113 25 H 0.285 0.715 26 H 0.127 0.873 27 H 0.114 0.886 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.212 0.788 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.199 -2.730 3.164 6.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.476 4.476 8 H 0.103 0.897 9 C 0.059 3.941 10 C -0.181 4.181 11 N -0.173 5.173 12 C -0.194 4.194 13 C -0.097 4.097 14 C -0.002 4.002 15 C -0.122 4.122 16 C -0.142 4.142 17 C -0.104 4.104 18 C -0.076 4.076 19 N -0.225 5.225 20 C -0.036 4.036 21 N -0.203 5.203 22 H 0.266 0.734 23 C -0.049 4.049 24 C -0.138 4.138 25 H 0.097 0.903 26 H 0.145 0.855 27 H 0.132 0.868 28 H 0.147 0.853 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.228 0.772 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.938 -3.507 3.197 7.601 hybrid contribution 0.988 1.650 -0.562 2.004 sum -4.949 -1.858 2.636 5.907 Atomic orbital electron populations 1.69772 1.07714 1.29916 1.33646 1.26003 0.94821 1.01748 0.91993 0.86221 0.80621 0.80017 0.79484 1.19251 1.19863 1.18199 1.19584 0.97809 0.90632 1.39572 0.89705 1.18489 0.92057 0.93762 0.89792 1.22545 1.02470 0.88079 1.04993 1.66916 1.07597 1.31677 1.11098 1.21632 0.97702 0.94937 1.05093 1.19442 0.94970 0.95542 0.99744 1.17898 0.91032 0.96569 0.94684 1.21011 0.98606 0.99347 0.93209 1.20774 0.92882 1.00429 1.00108 1.20127 0.98676 0.97717 0.93888 1.18980 0.90271 1.01647 0.96711 1.70418 1.30302 1.15432 1.06329 1.25239 0.82693 0.99013 0.96660 1.43181 1.14914 1.42628 1.19608 0.73447 1.18848 0.97187 0.99300 0.89538 1.21813 0.97442 0.95853 0.98714 0.90349 0.85516 0.86838 0.85329 0.85636 0.85917 0.77158 0.85022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.08 10.90 55.55 0.61 -18.48 16 2 C 0.07 1.72 5.20 -17.34 -0.09 1.63 16 3 Si 0.91 17.41 29.59 -169.99 -5.03 12.38 16 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.45 -10.99 9.09 -37.73 -0.34 -11.33 16 8 H 0.08 1.98 7.90 -52.48 -0.41 1.56 16 9 C 0.06 1.60 5.59 -106.71 -0.60 1.00 16 10 C -0.02 -0.47 10.96 -16.72 -0.18 -0.65 16 11 N -0.47 -11.03 10.32 -12.27 -0.13 -11.16 16 12 C -0.04 -0.80 10.23 -16.95 -0.17 -0.97 16 13 C -0.09 -2.10 5.48 -104.84 -0.57 -2.68 16 14 C 0.00 0.03 5.49 -104.86 -0.58 -0.54 16 15 C -0.10 -1.81 9.52 -39.19 -0.37 -2.18 16 16 C -0.12 -1.85 10.00 -39.68 -0.40 -2.25 16 17 C -0.08 -1.34 10.09 -39.18 -0.40 -1.74 16 18 C 0.04 0.75 7.22 -84.72 -0.61 0.14 16 19 N -0.50 -8.45 11.28 -12.06 -0.14 -8.59 16 20 C 0.25 3.42 12.97 -89.79 -1.16 2.25 16 21 N -0.59 -9.19 6.13 -11.60 -0.07 -9.26 16 22 H 0.43 6.08 8.57 -40.82 -0.35 5.73 16 23 C 0.06 1.14 6.80 -83.75 -0.57 0.57 16 24 C -0.11 -2.75 8.29 -38.22 -0.32 -3.07 16 25 H 0.29 6.33 8.30 -40.82 -0.34 5.99 16 26 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 27 H 0.11 2.30 8.05 -52.49 -0.42 1.88 16 28 H 0.13 2.19 8.04 -52.49 -0.42 1.76 16 29 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 30 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.21 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.13 3.31 6.20 -52.49 -0.33 2.99 16 LS Contribution 285.74 15.07 4.31 4.31 Total: -1.00 -28.97 285.74 -9.58 -38.55 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -2.76 Total: 12.07 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -6.36 Total: -19.82 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.27 Total: -47.49 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.97 -9.58 -38.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243932154.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.741 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds