Wall clock time and date at job start Mon Mar 30 2020 00:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47005 * 270.00317 * 3 2 1 5 5 H 1.48503 * 109.46642 * 30.00084 * 3 2 1 6 6 H 1.48494 * 109.47014 * 149.99942 * 3 2 1 7 7 C 1.39940 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99976 * 163.64679 * 7 2 1 9 9 C 1.41432 * 119.99970 * 343.64293 * 7 2 1 10 10 C 1.40815 * 120.60175 * 155.73951 * 9 7 2 11 11 N 1.31496 * 120.67561 * 179.97438 * 10 9 7 12 12 C 1.31936 * 122.12650 * 359.74169 * 11 10 9 13 13 C 1.39718 * 121.14149 * 0.54979 * 12 11 10 14 14 C 1.48310 * 120.41288 * 179.71631 * 13 12 11 15 15 C 1.39043 * 120.20775 * 129.74442 * 14 13 12 16 16 C 1.38489 * 120.31392 * 180.02562 * 15 14 13 17 17 C 1.37725 * 120.67438 * 359.95073 * 16 15 14 18 18 C 1.39805 * 120.01998 * 0.02562 * 17 16 15 19 19 N 1.35817 * 133.50552 * 180.27629 * 18 17 16 20 20 C 1.30111 * 109.59701 * 180.13217 * 19 18 17 21 21 N 1.36034 * 110.06519 * 359.60530 * 20 19 18 22 22 H 0.96999 * 126.34268 * 180.21636 * 21 20 19 23 23 C 1.37877 * 107.32448 * 0.24279 * 21 20 19 24 24 C 1.39216 * 119.17228 * 359.44748 * 13 12 11 25 25 H 0.96998 * 119.99721 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.66073 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.43305 * 180.26912 * 12 11 10 28 28 H 1.08000 * 119.83982 * 0.02562 * 15 14 13 29 29 H 1.08008 * 119.66530 * 179.97438 * 16 15 14 30 30 H 1.07997 * 119.99226 * 180.02562 * 17 16 15 31 31 H 1.08004 * 124.97164 * 179.86665 * 20 19 18 32 32 H 1.07998 * 120.96032 * 180.29517 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0552 -1.2307 -0.2639 9 6 1.3437 -2.4121 0.3439 10 6 1.8231 -3.6540 -0.1153 11 7 1.2070 -4.7708 0.2044 12 6 0.1282 -4.7843 0.9639 13 6 -0.4215 -3.5992 1.4594 14 6 -1.6383 -3.6327 2.3067 15 6 -1.6651 -2.9536 3.5197 16 6 -2.7999 -2.9839 4.3128 17 6 -3.9172 -3.6837 3.9143 18 6 -3.9136 -4.3736 2.6983 19 7 -4.8372 -5.1283 2.0488 20 6 -4.3374 -5.5606 0.9279 21 7 -3.0640 -5.1059 0.7786 22 1 -2.4746 -5.2831 0.0289 23 6 -2.7660 -4.3470 1.8905 24 6 0.1905 -2.3870 1.1526 25 1 -0.4849 0.8400 0.0004 26 1 2.7059 -3.6895 -0.7364 27 1 -0.3407 -5.7273 1.2031 28 1 -0.7967 -2.4000 3.8449 29 1 -2.8091 -2.4530 5.2534 30 1 -4.7964 -3.6995 4.5412 31 1 -4.8588 -6.1853 0.2177 32 1 -0.2071 -1.4541 1.5241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243932154.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:20 Heat of formation + Delta-G solvation = 70.607662 kcal Electronic energy + Delta-G solvation = -18674.584586 eV Core-core repulsion = 15792.022739 eV Total energy + Delta-G solvation = -2882.561847 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.00378 -40.27574 -38.10164 -36.03192 -34.63768 -32.71078 -32.20049 -30.29121 -29.61341 -27.57154 -24.74063 -23.80823 -23.26867 -22.84136 -21.51567 -19.50495 -18.56828 -17.89529 -17.55584 -17.04731 -16.55387 -16.38938 -15.97616 -15.37568 -15.18822 -14.56559 -14.45247 -14.22719 -13.63330 -13.36529 -13.25978 -12.89285 -12.84462 -12.66688 -12.62170 -12.24262 -11.84158 -11.68809 -11.24815 -11.03687 -10.22299 -10.12155 -9.70757 -9.34079 -8.77346 -8.73099 -6.51481 -0.14459 0.54199 0.76480 0.98860 1.38481 1.47602 1.54277 1.91539 2.10838 2.15908 2.64979 2.92054 3.39187 3.60940 3.69599 4.01131 4.11389 4.17141 4.41307 4.45841 4.54409 4.59626 4.75624 4.86110 4.97480 5.06373 5.17099 5.22739 5.48691 5.55100 5.57497 5.72622 5.84769 5.94909 5.95878 6.42401 6.46848 6.69913 6.70692 6.89234 7.60619 8.18530 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.022451 B = 0.005955 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.871004 B = 4701.061421 C = 5310.586062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.037 3.963 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.255 1.255 7 C -0.476 4.476 8 H 0.089 0.911 9 C 0.040 3.960 10 C -0.038 4.038 11 N -0.474 5.474 12 C -0.038 4.038 13 C -0.082 4.082 14 C -0.032 4.032 15 C -0.109 4.109 16 C -0.114 4.114 17 C -0.083 4.083 18 C 0.024 3.976 19 N -0.531 5.531 20 C 0.273 3.727 21 N -0.596 5.596 22 H 0.430 0.570 23 C 0.040 3.960 24 C -0.134 4.134 25 H 0.292 0.708 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.127 0.873 29 H 0.163 0.837 30 H 0.149 0.851 31 H 0.265 0.735 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.335 -2.596 3.670 7.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.179 1.179 7 C -0.505 4.505 8 H 0.107 0.893 9 C 0.036 3.964 10 C -0.199 4.199 11 N -0.181 5.181 12 C -0.195 4.195 13 C -0.084 4.084 14 C -0.036 4.036 15 C -0.128 4.128 16 C -0.134 4.134 17 C -0.102 4.102 18 C -0.093 4.093 19 N -0.252 5.252 20 C -0.014 4.014 21 N -0.207 5.207 22 H 0.270 0.730 23 C -0.070 4.070 24 C -0.160 4.160 25 H 0.103 0.897 26 H 0.155 0.845 27 H 0.151 0.849 28 H 0.145 0.855 29 H 0.180 0.820 30 H 0.166 0.834 31 H 0.280 0.720 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.072 -3.393 3.700 8.672 hybrid contribution 1.205 1.496 -0.701 2.044 sum -5.867 -1.897 2.999 6.857 Atomic orbital electron populations 1.69830 1.09160 1.31179 1.33870 1.26847 0.95482 1.04793 0.90865 0.85128 0.79166 0.75408 0.79682 1.18568 1.19086 1.17877 1.19871 0.98239 0.91486 1.40864 0.89316 1.18808 0.92728 0.94531 0.90326 1.22720 1.03255 0.88095 1.05866 1.66930 1.08118 1.31522 1.11487 1.21956 0.97247 0.95801 1.04514 1.19623 0.95337 0.94636 0.98828 1.17905 0.90805 0.99191 0.95668 1.21188 0.99648 0.98874 0.93122 1.21096 0.91510 0.99939 1.00886 1.20544 0.99622 0.96543 0.93492 1.19406 0.90312 1.02141 0.97451 1.70457 1.30527 1.16547 1.07680 1.26320 0.81626 0.97231 0.96218 1.43297 1.15758 1.42460 1.19144 0.73005 1.18949 0.97147 1.00048 0.90890 1.21764 0.98196 0.96207 0.99788 0.89679 0.84542 0.84923 0.85533 0.81972 0.83361 0.71969 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.32 10.90 21.83 0.24 -40.08 16 2 C 0.04 1.74 5.20 85.25 0.44 2.18 16 3 Si 0.99 35.53 29.59 68.60 2.03 37.56 16 4 H -0.26 -9.09 7.11 99.48 0.71 -8.39 16 5 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 6 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 7 C -0.48 -24.01 9.09 23.47 0.21 -23.80 16 8 H 0.09 4.24 7.90 -2.91 -0.02 4.21 16 9 C 0.04 2.10 5.59 -21.22 -0.12 1.99 16 10 C -0.04 -1.90 10.96 85.37 0.94 -0.97 16 11 N -0.47 -22.72 10.32 -192.73 -1.99 -24.70 16 12 C -0.04 -1.68 10.23 85.04 0.87 -0.81 16 13 C -0.08 -3.72 5.48 -20.00 -0.11 -3.83 16 14 C -0.03 -1.28 5.49 -20.02 -0.11 -1.39 16 15 C -0.11 -3.83 9.52 22.52 0.21 -3.61 16 16 C -0.11 -3.26 10.00 22.21 0.22 -3.04 16 17 C -0.08 -2.45 10.09 22.53 0.23 -2.23 16 18 C 0.02 0.84 7.22 39.42 0.28 1.12 16 19 N -0.53 -16.65 11.28 -192.07 -2.17 -18.81 16 20 C 0.27 6.68 12.97 180.06 2.34 9.02 16 21 N -0.60 -17.67 6.13 -190.60 -1.17 -18.84 16 22 H 0.43 11.84 8.57 -92.71 -0.79 11.04 16 23 C 0.04 1.47 6.80 39.10 0.27 1.73 16 24 C -0.13 -6.76 8.29 23.15 0.19 -6.57 16 25 H 0.29 13.09 8.30 -92.71 -0.77 12.32 16 26 H 0.14 6.28 8.06 -2.91 -0.02 6.25 16 27 H 0.13 5.33 8.05 -2.91 -0.02 5.31 16 28 H 0.13 4.37 8.04 -2.91 -0.02 4.35 16 29 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 30 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.26 3.15 8.06 -2.91 -0.02 3.13 16 32 H 0.12 6.21 6.20 -2.91 -0.02 6.20 16 Total: -1.00 -63.74 285.74 3.18 -60.56 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: 0.38 Total: 34.52 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 5.87 Total: -30.21 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -5.09 Total: -102.43 kcal Atomic # 14 Polarization: 35.53 SS G_CDS: 2.03 Total: 37.56 kcal Total: -63.74 3.18 -60.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243932154.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.167 kcal (2) G-P(sol) polarization free energy of solvation -63.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds