Wall clock time and date at job start Mon Mar 30 2020 00:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30697 * 1 3 3 Si 1.86807 * 119.99938 * 2 1 4 4 H 1.48497 * 109.47129 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46618 * 299.99991 * 3 2 1 6 6 H 1.48500 * 109.46973 * 59.99886 * 3 2 1 7 7 C 1.40163 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99826 * 194.15536 * 7 2 1 9 9 C 1.40840 * 119.99986 * 14.15361 * 7 2 1 10 10 C 1.41149 * 121.11320 * 24.46706 * 9 7 2 11 11 C 1.36430 * 119.11379 * 180.02562 * 10 9 7 12 12 N 1.32254 * 121.53886 * 359.97438 * 11 10 9 13 13 C 1.31620 * 122.51912 * 359.72324 * 12 11 10 14 14 C 1.39437 * 120.64416 * 0.54379 * 13 12 11 15 15 C 1.47634 * 120.79436 * 179.75224 * 14 13 12 16 16 C 1.39505 * 120.24555 * 64.69882 * 15 14 13 17 17 C 1.38311 * 120.26872 * 180.02562 * 16 15 14 18 18 C 1.37887 * 120.71778 * 359.97438 * 17 16 15 19 19 C 1.39847 * 120.10277 * 0.03466 * 18 17 16 20 20 N 1.35822 * 133.49289 * 179.97438 * 19 18 17 21 21 C 1.30115 * 109.56680 * 179.97438 * 20 19 18 22 22 N 1.36029 * 110.03670 * 0.27235 * 21 20 19 23 23 H 0.97000 * 126.32112 * 179.74082 * 22 21 20 24 24 C 1.37698 * 107.35292 * 359.56587 * 22 21 20 25 25 H 0.96997 * 120.00191 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.44524 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.22991 * 179.97438 * 11 10 9 28 28 H 1.08007 * 119.67231 * 180.27426 * 13 12 11 29 29 H 1.07993 * 119.86383 * 359.97438 * 16 15 14 30 30 H 1.08007 * 119.63794 * 179.97438 * 17 16 15 31 31 H 1.08000 * 119.95076 * 179.97438 * 18 17 16 32 32 H 1.08004 * 124.97585 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 3.7010 1.3465 -0.0006 5 1 1.8822 2.3964 -1.2125 6 1 1.8822 2.3965 1.2125 7 6 2.0078 -1.2138 0.0005 8 1 3.0632 -1.2279 0.2293 9 6 1.3357 -2.4152 -0.2972 10 6 0.1555 -2.4181 -1.0714 11 6 -0.4627 -3.6055 -1.3348 12 7 0.0184 -4.7512 -0.8822 13 6 1.1166 -4.8216 -0.1601 14 6 1.8240 -3.6668 0.1721 15 6 3.0531 -3.7413 0.9865 16 6 4.1843 -4.3922 0.4935 17 6 5.3359 -4.4628 1.2562 18 6 5.3857 -3.8932 2.5110 19 6 4.2650 -3.2353 3.0276 20 7 4.0146 -2.5941 4.1985 21 6 2.7946 -2.1420 4.1955 22 7 2.1797 -2.4677 3.0266 23 1 1.2677 -2.2509 2.7774 24 6 3.0923 -3.1583 2.2610 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2532 -1.4928 -1.4496 27 1 -1.3661 -3.6098 -1.9266 28 1 1.4709 -5.7828 0.1821 29 1 4.1603 -4.8435 -0.4873 30 1 6.2056 -4.9696 0.8647 31 1 6.2913 -3.9560 3.0961 32 1 2.3360 -1.5925 5.0043 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243936138.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:31 Heat of formation + Delta-G solvation = 73.259159 kcal Electronic energy + Delta-G solvation = -19230.359359 eV Core-core repulsion = 16347.912490 eV Total energy + Delta-G solvation = -2882.446869 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.84200 -40.23737 -37.88462 -36.13072 -34.41039 -32.59448 -31.92574 -30.12412 -29.62971 -27.81047 -24.58124 -23.52437 -23.17857 -22.73856 -21.36017 -19.52233 -18.70590 -17.83417 -17.47456 -16.65708 -16.36141 -16.18810 -15.81485 -15.46585 -15.08031 -14.49266 -14.41458 -14.14905 -14.05962 -13.28549 -13.17360 -12.92675 -12.76434 -12.55365 -12.47971 -12.05321 -11.76759 -11.44323 -11.34770 -10.95939 -9.98632 -9.94245 -9.57763 -9.18381 -8.87423 -8.59417 -6.61232 0.08273 0.72557 0.86447 0.93955 1.32204 1.43349 1.45978 2.02046 2.09271 2.29796 2.69085 3.05150 3.50710 3.64091 3.89584 4.01717 4.30100 4.32027 4.46681 4.56265 4.68303 4.75281 4.92738 4.97435 4.99734 5.20114 5.28855 5.40975 5.53197 5.62322 5.70735 5.79616 5.90608 6.10307 6.14066 6.47548 6.58870 6.72607 6.77348 7.01308 7.69257 8.11838 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.010145 C = 0.007203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.023686 B = 2759.437330 C = 3886.166624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.051 3.949 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.449 4.449 8 H 0.066 0.934 9 C 0.122 3.878 10 C -0.228 4.228 11 C 0.077 3.923 12 N -0.588 5.588 13 C 0.121 3.879 14 C -0.238 4.238 15 C 0.006 3.994 16 C -0.123 4.123 17 C -0.115 4.115 18 C -0.097 4.097 19 C 0.016 3.984 20 N -0.533 5.533 21 C 0.259 3.741 22 N -0.585 5.585 23 H 0.425 0.575 24 C 0.052 3.948 25 H 0.295 0.705 26 H 0.120 0.880 27 H 0.140 0.860 28 H 0.141 0.859 29 H 0.131 0.869 30 H 0.160 0.840 31 H 0.141 0.859 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.443 -0.280 4.031 6.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.168 4.168 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.479 4.479 8 H 0.084 0.916 9 C 0.114 3.886 10 C -0.250 4.250 11 C -0.071 4.071 12 N -0.303 5.303 13 C -0.036 4.036 14 C -0.243 4.243 15 C 0.003 3.997 16 C -0.143 4.143 17 C -0.135 4.135 18 C -0.116 4.116 19 C -0.102 4.102 20 N -0.254 5.254 21 C -0.028 4.028 22 N -0.193 5.193 23 H 0.264 0.736 24 C -0.059 4.059 25 H 0.106 0.894 26 H 0.138 0.862 27 H 0.157 0.843 28 H 0.159 0.841 29 H 0.149 0.851 30 H 0.177 0.823 31 H 0.158 0.842 32 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 4.361 -0.820 4.474 6.302 hybrid contribution -0.651 1.703 -0.695 1.951 sum 3.710 0.882 3.779 5.369 Atomic orbital electron populations 1.69742 1.08474 1.31097 1.32881 1.26575 0.95360 1.03742 0.91167 0.85372 0.79223 0.77187 0.79471 1.19443 1.18491 1.18551 1.19487 0.96388 0.91084 1.40923 0.91578 1.18023 0.90877 0.92027 0.87624 1.21974 1.00453 0.98449 1.04151 1.22052 0.98777 0.88500 0.97766 1.67384 1.15781 1.29316 1.17779 1.22478 0.90771 0.96678 0.93685 1.19728 1.00694 0.94545 1.09356 1.17737 0.94166 0.97866 0.89956 1.21262 0.91912 1.00749 1.00334 1.21041 0.98413 1.00560 0.93447 1.20478 0.96280 0.98561 0.96317 1.19432 0.94973 1.03678 0.92103 1.70422 1.15694 1.17652 1.21638 1.26109 0.88949 0.97981 0.89736 1.43160 1.14903 1.46004 1.15282 0.73599 1.19112 0.91427 1.00653 0.94742 0.89395 0.86237 0.84296 0.84126 0.85067 0.82284 0.84161 0.73001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.17 10.80 21.86 0.24 -35.93 16 2 C 0.05 2.28 5.25 85.33 0.45 2.73 16 3 Si 0.97 35.53 29.58 68.60 2.03 37.56 16 4 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 5 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 6 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 7 C -0.45 -21.68 8.13 23.37 0.19 -21.49 16 8 H 0.07 3.36 7.18 -2.91 -0.02 3.34 16 9 C 0.12 5.98 5.63 -20.92 -0.12 5.86 16 10 C -0.23 -11.09 8.73 22.56 0.20 -10.90 16 11 C 0.08 3.53 11.08 84.21 0.93 4.47 16 12 N -0.59 -27.20 10.32 -196.13 -2.02 -29.23 16 13 C 0.12 5.36 10.92 85.01 0.93 6.29 16 14 C -0.24 -10.78 5.39 -19.50 -0.11 -10.88 16 15 C 0.01 0.25 4.49 -20.01 -0.09 0.16 16 16 C -0.12 -4.34 9.74 22.59 0.22 -4.12 16 17 C -0.11 -3.44 9.99 22.20 0.22 -3.21 16 18 C -0.10 -3.16 10.09 22.58 0.23 -2.94 16 19 C 0.02 0.61 7.22 39.42 0.28 0.89 16 20 N -0.53 -19.19 11.28 -192.08 -2.17 -21.36 16 21 C 0.26 7.92 12.97 180.06 2.34 10.26 16 22 N -0.58 -21.10 6.21 -190.48 -1.18 -22.28 16 23 H 0.43 15.49 8.96 -92.71 -0.83 14.66 16 24 C 0.05 2.09 6.26 39.21 0.25 2.34 16 25 H 0.29 12.04 8.29 -92.71 -0.77 11.27 16 26 H 0.12 5.95 6.13 -2.91 -0.02 5.93 16 27 H 0.14 5.58 8.06 -2.91 -0.02 5.55 16 28 H 0.14 5.53 8.06 -2.91 -0.02 5.51 16 29 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 30 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 31 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 32 H 0.25 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -59.07 284.33 3.15 -55.92 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: 0.34 Total: 35.86 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 5.92 Total: -20.54 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -5.14 Total: -108.80 kcal Atomic # 14 Polarization: 35.53 SS G_CDS: 2.03 Total: 37.56 kcal Total: -59.07 3.15 -55.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243936138.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.176 kcal (2) G-P(sol) polarization free energy of solvation -59.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds